Wall clock time and date at job start Wed Apr 1 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99955 * 2 1 4 4 H 1.48497 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46921 * 299.99778 * 3 2 1 6 6 H 1.48497 * 109.47238 * 60.00054 * 3 2 1 7 7 C 1.38809 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00137 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99960 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.53037 * 109.45781 * 184.99518 * 11 10 9 13 13 C 1.53193 * 109.30691 * 178.61196 * 12 11 10 14 14 N 1.46921 * 108.77713 * 54.64040 * 13 12 11 15 15 C 1.34780 * 120.63695 * 126.36895 * 14 13 12 16 16 O 1.21286 * 119.99484 * 4.82253 * 15 14 13 17 17 C 1.50689 * 120.00189 * 184.82746 * 15 14 13 18 18 H 1.09004 * 109.40295 * 325.14345 * 17 15 14 19 19 C 1.53071 * 109.43797 * 85.03898 * 17 15 14 20 20 C 1.53412 * 108.29269 * 168.25080 * 19 17 15 21 21 O 1.42829 * 108.37618 * 295.25268 * 20 19 17 22 22 C 1.35848 * 117.85424 * 49.14849 * 21 20 19 23 23 C 1.39149 * 118.49766 * 162.98294 * 22 21 20 24 24 C 1.37971 * 120.21611 * 179.81978 * 23 22 21 25 25 C 1.38285 * 119.95913 * 359.97438 * 24 23 22 26 26 C 1.38108 * 119.98205 * 0.08566 * 25 24 23 27 27 C 1.38372 * 121.81402 * 342.92391 * 22 21 20 28 28 C 1.46925 * 118.73632 * 306.63568 * 14 13 12 29 29 C 1.52764 * 109.00671 * 53.31462 * 28 14 13 30 30 H 0.96996 * 119.99546 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00010 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47429 * 59.98905 * 10 9 7 33 33 H 1.09004 * 109.46968 * 299.99234 * 10 9 7 34 34 H 1.09000 * 109.44658 * 304.96223 * 11 10 9 35 35 H 1.09000 * 109.50180 * 58.66667 * 12 11 10 36 36 H 1.08993 * 109.52777 * 298.57765 * 12 11 10 37 37 H 1.08995 * 109.58908 * 294.84555 * 13 12 11 38 38 H 1.09008 * 109.58739 * 174.42486 * 13 12 11 39 39 H 1.08998 * 109.70376 * 287.94966 * 19 17 15 40 40 H 1.09002 * 109.70290 * 48.51754 * 19 17 15 41 41 H 1.08999 * 109.68160 * 54.97635 * 20 19 17 42 42 H 1.09004 * 109.68375 * 175.49275 * 20 19 17 43 43 H 1.07998 * 119.88694 * 359.79392 * 23 22 21 44 44 H 1.08000 * 120.01731 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.00859 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.83629 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.59004 * 173.14197 * 28 14 13 48 48 H 1.08997 * 109.59235 * 293.57697 * 28 14 13 49 49 H 1.09000 * 109.56648 * 185.55618 * 29 28 14 50 50 H 1.08997 * 109.35922 * 65.49592 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8198 0.0021 12 6 1.8250 -6.1413 0.1289 13 6 0.8245 -7.3008 0.1638 14 7 -0.0411 -7.2144 -1.0201 15 6 -0.1821 -8.2699 -1.8464 16 8 0.3379 -9.3301 -1.5698 17 6 -0.9856 -8.1326 -3.1138 18 1 -1.8214 -7.4544 -2.9410 19 6 -0.0942 -7.5700 -4.2237 20 6 -0.8368 -7.7159 -5.5581 21 8 -1.0002 -9.1080 -5.8327 22 6 -1.4961 -9.8961 -4.8435 23 6 -1.9965 -11.1497 -5.1814 24 6 -2.5052 -11.9807 -4.2045 25 6 -2.5180 -11.5679 -2.8847 26 6 -2.0232 -10.3238 -2.5459 27 6 -1.5130 -9.4847 -3.5224 28 6 -0.7456 -5.9535 -1.2896 29 6 0.2681 -4.8108 -1.3053 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6841 -3.7141 0.8920 33 1 2.6853 -3.7150 -0.8879 34 1 0.3799 -4.7123 0.8441 35 1 2.4098 -6.1375 1.0488 36 1 2.4913 -6.2613 -0.7253 37 1 0.2172 -7.2324 1.0663 38 1 1.3630 -8.2486 0.1543 39 1 0.1120 -6.5171 -4.0312 40 1 0.8420 -8.1270 -4.2609 41 1 -1.8141 -7.2382 -5.4885 42 1 -0.2563 -7.2497 -6.3543 43 1 -1.9871 -11.4731 -6.2118 44 1 -2.8925 -12.9532 -4.4703 45 1 -2.9156 -12.2179 -2.1193 46 1 -2.0346 -10.0037 -1.5144 47 1 -1.2426 -6.0123 -2.2579 48 1 -1.4835 -5.7729 -0.5081 49 1 -0.2552 -3.8599 -1.4061 50 1 0.9488 -4.9431 -2.1463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206608531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:34 Heat of formation + Delta-G solvation = -41.127787 kcal Electronic energy + Delta-G solvation = -30556.372713 eV Core-core repulsion = 26548.479888 eV Total energy + Delta-G solvation = -4007.892825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.40775 -39.89553 -37.89565 -37.59203 -35.01017 -34.59759 -32.84219 -31.19711 -30.87816 -30.42993 -30.32273 -27.36317 -26.13629 -24.09373 -23.78144 -23.30694 -22.81608 -21.81728 -20.67792 -20.10098 -18.90453 -18.04606 -17.64354 -17.02356 -16.90979 -16.13432 -15.91331 -15.31802 -15.06783 -14.80393 -14.52005 -14.34749 -14.24336 -14.04733 -13.78489 -13.57923 -13.55345 -13.53984 -13.17918 -12.80114 -12.65150 -12.48902 -12.25936 -12.11274 -11.85187 -11.77508 -11.40186 -11.22368 -11.11382 -11.04663 -10.89551 -10.84324 -10.46049 -10.38189 -10.33169 -10.01478 -9.74335 -9.69683 -8.98563 -8.91911 -8.69172 -8.35928 -6.95938 -5.81529 -3.09600 1.10136 1.26109 2.44034 2.83223 3.05247 3.39844 3.46068 3.47890 3.57389 4.10646 4.28147 4.40254 4.44155 4.54916 4.68587 4.80201 4.83806 4.87898 4.96822 5.01881 5.04317 5.12302 5.16192 5.18428 5.26488 5.30150 5.32251 5.41540 5.51040 5.56888 5.60300 5.65799 5.75202 5.81024 5.89689 5.91257 6.03195 6.07261 6.12817 6.22037 6.25375 6.34407 6.39242 6.39274 6.56617 6.57515 6.75410 6.86318 7.20375 7.29081 7.66891 8.04153 8.38001 9.49322 10.06950 10.41616 11.41506 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002277 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.446577 B =12292.261316 C =13064.043331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.093 4.093 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.524 3.476 16 O -0.534 6.534 17 C -0.066 4.066 18 H 0.106 0.894 19 C -0.150 4.150 20 C 0.065 3.935 21 O -0.316 6.316 22 C 0.139 3.861 23 C -0.155 4.155 24 C -0.085 4.085 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.144 4.144 28 C 0.101 3.899 29 C -0.125 4.125 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -21.647 -8.426 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.339 5.339 15 C 0.311 3.689 16 O -0.411 6.411 17 C -0.087 4.087 18 H 0.124 0.876 19 C -0.188 4.188 20 C -0.010 4.010 21 O -0.230 6.230 22 C 0.094 3.906 23 C -0.173 4.173 24 C -0.103 4.103 25 C -0.174 4.174 26 C -0.074 4.074 27 C -0.145 4.145 28 C -0.021 4.021 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.100 0.900 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.579 -22.133 -8.456 24.342 hybrid contribution 0.190 1.351 0.322 1.402 sum -5.389 -20.782 -8.134 22.959 Atomic orbital electron populations 1.69661 1.05076 1.25535 1.58048 1.24729 0.95542 0.97677 1.03110 0.86127 0.78808 0.84131 0.77196 1.20587 1.21871 1.21871 1.19277 0.91071 0.84202 1.42329 0.91213 1.42378 1.05797 0.99987 1.89468 1.20668 0.93153 0.85359 0.97771 1.21301 0.97864 0.94435 0.97639 1.21915 0.97724 0.94071 1.02749 1.21635 0.92436 1.00033 0.86801 1.48165 1.46935 1.12836 1.25966 1.20203 0.81079 0.83520 0.84081 1.90706 1.48839 1.27039 1.74509 1.20220 0.98769 0.95707 0.94024 0.87607 1.22215 0.99400 1.03369 0.93833 1.22989 1.00754 0.79619 0.97646 1.85993 1.79375 1.20025 1.37638 1.18632 0.94221 0.91366 0.86401 1.20541 1.03133 0.93175 1.00492 1.20920 0.97842 0.98934 0.92571 1.20991 1.03166 0.96717 0.96485 1.20848 0.94713 0.93436 0.98425 1.19265 1.05560 0.96990 0.92700 1.21886 0.95165 0.83239 1.01841 1.21863 0.97987 0.98174 0.98323 0.93581 0.78296 0.96367 0.96436 0.90932 0.90586 0.91627 0.91451 0.89287 0.88620 0.89665 0.91293 0.86814 0.85267 0.85488 0.85925 0.86221 0.89963 0.90893 0.89189 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.67 5.32 -59.91 -0.32 -17.98 16 10 C 0.16 3.01 5.65 -4.04 -0.02 2.99 16 11 C -0.09 -1.36 2.19 -90.58 -0.20 -1.56 16 12 C -0.13 -1.55 5.36 -26.61 -0.14 -1.70 16 13 C 0.11 1.33 6.42 -3.71 -0.02 1.30 16 14 N -0.61 -7.08 2.98 -173.04 -0.52 -7.59 16 15 C 0.52 6.66 5.97 -10.99 -0.07 6.60 16 16 O -0.53 -8.54 14.57 5.55 0.08 -8.46 16 17 C -0.07 -0.70 1.89 -92.85 -0.18 -0.87 16 18 H 0.11 0.93 6.26 -51.93 -0.33 0.60 16 19 C -0.15 -1.40 5.42 -26.48 -0.14 -1.54 16 20 C 0.06 0.53 7.03 37.37 0.26 0.80 16 21 O -0.32 -3.50 10.27 -19.26 -0.20 -3.69 16 22 C 0.14 1.62 6.47 -39.19 -0.25 1.36 16 23 C -0.15 -1.59 9.94 -39.34 -0.39 -1.98 16 24 C -0.08 -0.78 10.04 -39.66 -0.40 -1.18 16 25 C -0.16 -1.56 10.04 -39.61 -0.40 -1.96 16 26 C -0.06 -0.65 8.34 -39.53 -0.33 -0.98 16 27 C -0.14 -1.70 5.12 -104.44 -0.53 -2.23 16 28 C 0.10 1.07 6.24 -3.93 -0.02 1.05 16 29 C -0.13 -1.66 5.23 -26.83 -0.14 -1.80 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.38 9.57 6.84 -40.82 -0.28 9.29 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.12 7.04 -51.92 -0.37 0.75 16 39 H 0.10 0.77 7.81 -51.93 -0.41 0.36 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.40 7.16 -52.48 -0.38 1.02 16 47 H 0.08 0.71 5.11 -51.93 -0.27 0.45 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -32.83 391.11 -10.43 -43.26 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.85 Total: 7.13 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.23 Total: -8.85 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.11 Total: -52.30 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.12 Total: -12.15 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.83 -10.43 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206608531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.135 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds