Wall clock time and date at job start Wed Apr 1 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00531 * 2 1 4 4 H 1.48502 * 109.47244 * 270.00004 * 3 2 1 5 5 H 1.48500 * 109.47572 * 150.00148 * 3 2 1 6 6 H 1.48504 * 109.47049 * 29.99562 * 3 2 1 7 7 C 1.38819 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99743 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99924 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99862 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.53037 * 109.46283 * 295.02987 * 11 10 9 13 13 C 1.53193 * 109.31258 * 178.59621 * 12 11 10 14 14 N 1.46929 * 108.76293 * 54.66336 * 13 12 11 15 15 C 1.34770 * 120.63388 * 126.40249 * 14 13 12 16 16 O 1.21275 * 120.00248 * 175.14400 * 15 14 13 17 17 C 1.50703 * 119.99827 * 355.14300 * 15 14 13 18 18 H 1.08998 * 109.43746 * 35.04426 * 17 15 14 19 19 C 1.53069 * 109.43823 * 275.17222 * 17 15 14 20 20 C 1.53405 * 108.30086 * 191.74269 * 19 17 15 21 21 O 1.42826 * 108.37547 * 64.71094 * 20 19 17 22 22 C 1.35838 * 117.85756 * 310.79461 * 21 20 19 23 23 C 1.39147 * 118.49763 * 196.97763 * 22 21 20 24 24 C 1.37967 * 120.21527 * 180.44185 * 23 22 21 25 25 C 1.38285 * 119.95883 * 359.95652 * 24 23 22 26 26 C 1.38106 * 119.98647 * 359.93953 * 25 24 23 27 27 C 1.38376 * 121.80710 * 17.25873 * 22 21 20 28 28 C 1.46932 * 118.73589 * 306.37788 * 14 13 12 29 29 C 1.53040 * 109.45919 * 174.97691 * 11 10 9 30 30 H 0.97008 * 119.99552 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00084 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47625 * 300.00641 * 10 9 7 33 33 H 1.09004 * 109.47250 * 60.00619 * 10 9 7 34 34 H 1.09001 * 109.45586 * 55.00689 * 11 10 9 35 35 H 1.08998 * 109.49677 * 298.56612 * 12 11 10 36 36 H 1.09002 * 109.49291 * 58.66134 * 12 11 10 37 37 H 1.08992 * 109.59867 * 294.86869 * 13 12 11 38 38 H 1.09000 * 109.69901 * 174.50929 * 13 12 11 39 39 H 1.09004 * 109.69313 * 311.44532 * 19 17 15 40 40 H 1.08998 * 109.69956 * 72.03741 * 19 17 15 41 41 H 1.08993 * 109.68319 * 304.98613 * 20 19 17 42 42 H 1.09004 * 109.71092 * 184.44458 * 20 19 17 43 43 H 1.08004 * 119.89364 * 0.38959 * 23 22 21 44 44 H 1.07997 * 120.02355 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.01477 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.84707 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.58510 * 293.82465 * 28 14 13 48 48 H 1.08996 * 109.70346 * 173.46681 * 28 14 13 49 49 H 1.09004 * 109.49903 * 301.33494 * 29 11 10 50 50 H 1.08993 * 109.50320 * 61.43722 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5478 1.4400 0.7000 6 1 1.4477 2.6527 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1119 -2.4710 0.0011 11 6 5.6162 -2.1915 0.0009 12 6 6.0060 -1.4994 -1.3071 13 6 7.5062 -1.1896 -1.2889 14 7 8.2423 -2.4329 -1.0219 15 6 9.2270 -2.8388 -1.8476 16 8 9.8858 -3.8185 -1.5702 17 6 9.5096 -2.0752 -3.1158 18 1 9.3430 -1.0119 -2.9437 19 6 8.5735 -2.5638 -4.2239 20 6 9.0699 -1.9952 -5.5594 21 8 10.3556 -2.5523 -5.8359 22 6 11.2882 -2.5173 -4.8488 23 6 12.6229 -2.7143 -5.1892 24 6 13.5983 -2.6950 -4.2137 25 6 13.2501 -2.4784 -2.8930 26 6 11.9266 -2.2804 -2.5518 27 6 10.9430 -2.2982 -3.5268 28 6 7.8846 -3.2251 0.1628 29 6 6.3800 -3.5116 0.1284 30 1 -0.4850 0.8402 -0.0004 31 1 3.8645 -0.3623 -0.0004 32 1 3.8489 -3.0417 0.8918 33 1 3.8483 -3.0436 -0.8882 34 1 5.8655 -1.5450 0.8423 35 1 5.7800 -2.1557 -2.1475 36 1 5.4443 -0.5708 -1.4087 37 1 7.7200 -0.4629 -0.5053 38 1 7.8097 -0.7856 -2.2547 39 1 8.5855 -3.6531 -4.2612 40 1 7.5598 -2.2135 -4.0295 41 1 9.1470 -0.9101 -5.4904 42 1 8.3746 -2.2640 -6.3546 43 1 12.8961 -2.8836 -6.2203 44 1 14.6333 -2.8486 -4.4813 45 1 14.0129 -2.4636 -2.1286 46 1 11.6572 -2.1110 -1.5197 47 1 8.1293 -2.6642 1.0648 48 1 8.4358 -4.1653 0.1563 49 1 6.0846 -4.0154 1.0488 50 1 6.1505 -4.1488 -0.7255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206608534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:38 Heat of formation + Delta-G solvation = -36.451953 kcal Electronic energy + Delta-G solvation = -30664.952830 eV Core-core repulsion = 26657.262765 eV Total energy + Delta-G solvation = -4007.690066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.47405 -39.97702 -37.99453 -37.66417 -35.18364 -34.67479 -32.88465 -31.32131 -30.93321 -30.75361 -30.43580 -27.58695 -26.32624 -24.14155 -23.72169 -23.46015 -22.81723 -21.65716 -20.75505 -20.22943 -19.01863 -18.11292 -17.86283 -17.37660 -16.96962 -16.19233 -16.00420 -15.38894 -15.14101 -14.79215 -14.58272 -14.41064 -14.37256 -14.18304 -14.08475 -13.62655 -13.60355 -13.37587 -13.26641 -13.01269 -12.73485 -12.51205 -12.42074 -12.17809 -11.98630 -11.83389 -11.49451 -11.42279 -11.32788 -11.16709 -10.97647 -10.90463 -10.63364 -10.49375 -10.31990 -10.15549 -9.82260 -9.62947 -9.03860 -8.94719 -8.79114 -8.41091 -7.27768 -5.81210 -3.16798 1.04909 1.21167 2.36295 2.74166 2.99875 3.30926 3.32212 3.39951 3.51873 4.03332 4.21330 4.33450 4.37258 4.53591 4.58673 4.72483 4.74495 4.81971 4.83214 4.89127 4.94548 5.01146 5.09851 5.12437 5.17750 5.21441 5.26871 5.28459 5.39945 5.50332 5.52665 5.58775 5.65503 5.66005 5.75201 5.77120 5.83122 5.98975 6.02127 6.05146 6.19150 6.21286 6.26575 6.30722 6.41224 6.51828 6.63502 6.73637 7.14907 7.19880 7.95279 7.96062 8.37803 9.16810 9.88898 10.08743 11.37341 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002473 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.013101 B =11319.274252 C =11968.870833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.163 3.837 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.100 3.900 14 N -0.607 5.607 15 C 0.524 3.476 16 O -0.532 6.532 17 C -0.066 4.066 18 H 0.105 0.895 19 C -0.150 4.150 20 C 0.065 3.935 21 O -0.316 6.316 22 C 0.139 3.861 23 C -0.154 4.154 24 C -0.084 4.084 25 C -0.155 4.155 26 C -0.056 4.056 27 C -0.145 4.145 28 C 0.113 3.887 29 C -0.125 4.125 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.376 -3.279 -8.480 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.165 4.165 13 C -0.022 4.022 14 N -0.340 5.340 15 C 0.311 3.689 16 O -0.408 6.408 17 C -0.087 4.087 18 H 0.123 0.877 19 C -0.188 4.188 20 C -0.010 4.010 21 O -0.230 6.230 22 C 0.094 3.906 23 C -0.173 4.173 24 C -0.102 4.102 25 C -0.173 4.173 26 C -0.074 4.074 27 C -0.146 4.146 28 C -0.009 4.009 29 C -0.164 4.164 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.132 0.868 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.096 0.904 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 26.488 -3.969 -8.507 28.102 hybrid contribution 0.141 1.406 0.334 1.452 sum 26.628 -2.563 -8.173 27.972 Atomic orbital electron populations 1.69701 1.05114 1.25812 1.57571 1.24687 0.95246 0.97200 1.02130 0.86553 0.79221 0.85049 0.77723 1.21062 1.20373 1.21721 1.19064 0.80687 0.94714 1.42918 0.89284 1.42719 1.04007 1.02191 1.91188 1.20645 0.87919 0.89243 0.98648 1.21359 0.96612 0.96227 0.97470 1.21957 0.93592 1.02288 0.98702 1.21960 0.92773 0.85576 1.01903 1.48146 1.35166 1.24599 1.26083 1.20207 0.79631 0.84931 0.84091 1.90711 1.48396 1.27272 1.74440 1.20218 0.93112 1.01347 0.94015 0.87703 1.22218 0.99622 1.03151 0.93846 1.22986 0.82550 0.97841 0.97630 1.85997 1.22175 1.77065 1.37742 1.18632 0.88916 0.96651 0.86411 1.20547 0.89648 1.06588 1.00524 1.20926 0.98899 0.97821 0.92566 1.20993 0.96100 1.03768 0.96484 1.20845 0.92251 0.95932 0.98407 1.19259 0.94258 1.08397 0.92702 1.21639 0.95946 0.96630 0.86712 1.21904 0.93602 0.97867 1.03025 0.93045 0.80731 0.95510 0.95540 0.90987 0.91253 0.89956 0.90984 0.89850 0.89590 0.88655 0.91350 0.86773 0.85230 0.85453 0.85909 0.86245 0.91481 0.89139 0.90366 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.97 55.49 0.78 -28.18 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.34 27.73 -169.99 -4.71 16.62 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.76 -17.04 5.12 -59.91 -0.31 -17.35 16 10 C 0.16 2.93 5.65 -4.04 -0.02 2.91 16 11 C -0.10 -1.31 2.19 -90.58 -0.20 -1.51 16 12 C -0.13 -1.53 5.25 -26.61 -0.14 -1.67 16 13 C 0.10 0.96 6.27 -3.71 -0.02 0.94 16 14 N -0.61 -6.58 2.97 -172.76 -0.51 -7.09 16 15 C 0.52 6.30 5.98 -10.99 -0.07 6.24 16 16 O -0.53 -8.17 14.55 5.56 0.08 -8.09 16 17 C -0.07 -0.65 1.89 -92.85 -0.18 -0.83 16 18 H 0.11 0.84 6.26 -51.93 -0.33 0.51 16 19 C -0.15 -1.31 5.42 -26.49 -0.14 -1.45 16 20 C 0.06 0.50 7.03 37.37 0.26 0.76 16 21 O -0.32 -3.35 10.27 -19.23 -0.20 -3.55 16 22 C 0.14 1.56 6.47 -39.19 -0.25 1.30 16 23 C -0.15 -1.53 9.94 -39.34 -0.39 -1.92 16 24 C -0.08 -0.74 10.04 -39.66 -0.40 -1.14 16 25 C -0.16 -1.49 10.04 -39.61 -0.40 -1.89 16 26 C -0.06 -0.63 8.34 -39.53 -0.33 -0.96 16 27 C -0.14 -1.63 5.12 -104.44 -0.53 -2.17 16 28 C 0.11 1.23 6.41 -3.71 -0.02 1.21 16 29 C -0.13 -1.43 5.36 -26.61 -0.14 -1.58 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.36 7.80 4.71 -40.82 -0.19 7.60 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.10 7.15 -51.93 -0.37 0.73 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.63 5.12 -51.93 -0.27 0.37 16 39 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.09 0.70 7.82 -51.93 -0.41 0.29 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.33 7.15 -52.49 -0.38 0.96 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.07 7.04 -51.93 -0.37 0.70 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -33.98 388.03 -10.07 -44.05 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.81 Total: 6.41 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.23 Total: -8.67 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.05 Total: -52.61 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.12 Total: -11.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.98 -10.07 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206608534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.594 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds