Wall clock time and date at job start Wed Apr 1 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00531 * 2 1 4 4 H 1.48502 * 109.47244 * 270.00004 * 3 2 1 5 5 H 1.48500 * 109.47572 * 150.00148 * 3 2 1 6 6 H 1.48504 * 109.47049 * 29.99562 * 3 2 1 7 7 C 1.38819 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99743 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99924 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99862 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.53037 * 109.46283 * 295.02987 * 11 10 9 13 13 C 1.53193 * 109.31258 * 178.59621 * 12 11 10 14 14 N 1.46929 * 108.76293 * 54.66336 * 13 12 11 15 15 C 1.34770 * 120.63388 * 126.40249 * 14 13 12 16 16 O 1.21275 * 120.00248 * 175.14400 * 15 14 13 17 17 C 1.50703 * 119.99827 * 355.14300 * 15 14 13 18 18 H 1.08998 * 109.43746 * 35.04426 * 17 15 14 19 19 C 1.53069 * 109.43823 * 275.17222 * 17 15 14 20 20 C 1.53405 * 108.30086 * 191.74269 * 19 17 15 21 21 O 1.42826 * 108.37547 * 64.71094 * 20 19 17 22 22 C 1.35838 * 117.85756 * 310.79461 * 21 20 19 23 23 C 1.39147 * 118.49763 * 196.97763 * 22 21 20 24 24 C 1.37967 * 120.21527 * 180.44185 * 23 22 21 25 25 C 1.38285 * 119.95883 * 359.95652 * 24 23 22 26 26 C 1.38106 * 119.98647 * 359.93953 * 25 24 23 27 27 C 1.38376 * 121.80710 * 17.25873 * 22 21 20 28 28 C 1.46932 * 118.73589 * 306.37788 * 14 13 12 29 29 C 1.53040 * 109.45919 * 174.97691 * 11 10 9 30 30 H 0.97008 * 119.99552 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00084 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47625 * 300.00641 * 10 9 7 33 33 H 1.09004 * 109.47250 * 60.00619 * 10 9 7 34 34 H 1.09001 * 109.45586 * 55.00689 * 11 10 9 35 35 H 1.08998 * 109.49677 * 298.56612 * 12 11 10 36 36 H 1.09002 * 109.49291 * 58.66134 * 12 11 10 37 37 H 1.08992 * 109.59867 * 294.86869 * 13 12 11 38 38 H 1.09000 * 109.69901 * 174.50929 * 13 12 11 39 39 H 1.09004 * 109.69313 * 311.44532 * 19 17 15 40 40 H 1.08998 * 109.69956 * 72.03741 * 19 17 15 41 41 H 1.08993 * 109.68319 * 304.98613 * 20 19 17 42 42 H 1.09004 * 109.71092 * 184.44458 * 20 19 17 43 43 H 1.08004 * 119.89364 * 0.38959 * 23 22 21 44 44 H 1.07997 * 120.02355 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.01477 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.84707 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.58510 * 293.82465 * 28 14 13 48 48 H 1.08996 * 109.70346 * 173.46681 * 28 14 13 49 49 H 1.09004 * 109.49903 * 301.33494 * 29 11 10 50 50 H 1.08993 * 109.50320 * 61.43722 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5478 1.4400 0.7000 6 1 1.4477 2.6527 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1119 -2.4710 0.0011 11 6 5.6162 -2.1915 0.0009 12 6 6.0060 -1.4994 -1.3071 13 6 7.5062 -1.1896 -1.2889 14 7 8.2423 -2.4329 -1.0219 15 6 9.2270 -2.8388 -1.8476 16 8 9.8858 -3.8185 -1.5702 17 6 9.5096 -2.0752 -3.1158 18 1 9.3430 -1.0119 -2.9437 19 6 8.5735 -2.5638 -4.2239 20 6 9.0699 -1.9952 -5.5594 21 8 10.3556 -2.5523 -5.8359 22 6 11.2882 -2.5173 -4.8488 23 6 12.6229 -2.7143 -5.1892 24 6 13.5983 -2.6950 -4.2137 25 6 13.2501 -2.4784 -2.8930 26 6 11.9266 -2.2804 -2.5518 27 6 10.9430 -2.2982 -3.5268 28 6 7.8846 -3.2251 0.1628 29 6 6.3800 -3.5116 0.1284 30 1 -0.4850 0.8402 -0.0004 31 1 3.8645 -0.3623 -0.0004 32 1 3.8489 -3.0417 0.8918 33 1 3.8483 -3.0436 -0.8882 34 1 5.8655 -1.5450 0.8423 35 1 5.7800 -2.1557 -2.1475 36 1 5.4443 -0.5708 -1.4087 37 1 7.7200 -0.4629 -0.5053 38 1 7.8097 -0.7856 -2.2547 39 1 8.5855 -3.6531 -4.2612 40 1 7.5598 -2.2135 -4.0295 41 1 9.1470 -0.9101 -5.4904 42 1 8.3746 -2.2640 -6.3546 43 1 12.8961 -2.8836 -6.2203 44 1 14.6333 -2.8486 -4.4813 45 1 14.0129 -2.4636 -2.1286 46 1 11.6572 -2.1110 -1.5197 47 1 8.1293 -2.6642 1.0648 48 1 8.4358 -4.1653 0.1563 49 1 6.0846 -4.0154 1.0488 50 1 6.1505 -4.1488 -0.7255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206608534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:36 Heat of formation + Delta-G solvation = -57.071556 kcal Electronic energy + Delta-G solvation = -30665.846964 eV Core-core repulsion = 26657.262765 eV Total energy + Delta-G solvation = -4008.584199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.25034 -40.82890 -39.01700 -38.40916 -36.68703 -35.49174 -34.41470 -32.76020 -32.02103 -31.60690 -31.16666 -28.78081 -27.33102 -25.22857 -24.77160 -24.37734 -23.71925 -23.03363 -21.78322 -21.09817 -19.98172 -19.58119 -18.82236 -18.44023 -17.68373 -16.93069 -16.87103 -16.60890 -16.18884 -15.95138 -15.86144 -15.56251 -15.33419 -15.20529 -14.89762 -14.80145 -14.44545 -14.34541 -14.28535 -14.14001 -13.98522 -13.70338 -13.41471 -13.22599 -13.03972 -12.88504 -12.77372 -12.52631 -12.21818 -12.17645 -12.16271 -11.87720 -11.80685 -11.71092 -11.65038 -11.44603 -11.40288 -10.95461 -10.73287 -9.77225 -9.70431 -9.28177 -9.14151 -8.01396 -5.35269 0.32247 0.46552 1.38624 1.44061 1.47341 1.51625 1.90573 2.34873 2.50417 2.78496 3.27955 3.29906 3.49403 3.55772 3.63705 3.66874 3.79033 3.84855 4.01058 4.02380 4.13310 4.15511 4.20456 4.32951 4.35613 4.39086 4.47243 4.51736 4.54318 4.55293 4.63421 4.70257 4.76519 4.82718 4.87890 4.90713 4.93932 5.02234 5.07124 5.07636 5.13723 5.24760 5.31112 5.47396 5.48925 5.54061 5.59381 5.76863 5.84169 6.22226 6.32451 6.45758 7.07138 7.09784 7.85139 8.06243 9.20365 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002473 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.013101 B =11319.274252 C =11968.870833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.246 1.246 6 H -0.300 1.300 7 C -0.236 4.236 8 H 0.050 0.950 9 N -0.754 5.754 10 C 0.160 3.840 11 C -0.087 4.087 12 C -0.125 4.125 13 C 0.104 3.896 14 N -0.604 5.604 15 C 0.524 3.476 16 O -0.571 6.571 17 C -0.063 4.063 18 H 0.128 0.872 19 C -0.146 4.146 20 C 0.061 3.939 21 O -0.330 6.330 22 C 0.122 3.878 23 C -0.166 4.166 24 C -0.083 4.083 25 C -0.163 4.163 26 C -0.074 4.074 27 C -0.161 4.161 28 C 0.116 3.884 29 C -0.116 4.116 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.156 0.844 45 H 0.141 0.859 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.022 -1.570 -9.043 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.170 1.170 6 H -0.227 1.227 7 C -0.367 4.367 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.034 3.966 11 C -0.106 4.106 12 C -0.164 4.164 13 C -0.018 4.018 14 N -0.336 5.336 15 C 0.312 3.688 16 O -0.451 6.451 17 C -0.084 4.084 18 H 0.146 0.854 19 C -0.184 4.184 20 C -0.013 4.013 21 O -0.245 6.245 22 C 0.077 3.923 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.181 4.181 26 C -0.092 4.092 27 C -0.162 4.162 28 C -0.007 4.007 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.152 0.848 43 H 0.160 0.840 44 H 0.174 0.826 45 H 0.159 0.841 46 H 0.131 0.869 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 29.171 -2.275 -9.069 30.633 hybrid contribution -0.729 0.722 0.516 1.148 sum 28.442 -1.553 -8.553 29.741 Atomic orbital electron populations 1.69908 1.07394 1.26754 1.59672 1.25603 0.96178 1.01631 1.02533 0.85356 0.78760 0.78951 0.78418 1.19782 1.16984 1.22702 1.19021 0.82982 0.93290 1.41447 0.93184 1.42660 1.02228 1.04197 1.90900 1.20792 0.90815 0.87283 0.97748 1.21246 0.93094 0.97496 0.98777 1.21914 0.95320 1.01580 0.97541 1.22051 0.90664 0.85072 1.03971 1.48207 1.34831 1.24891 1.25693 1.20580 0.79205 0.84444 0.84537 1.90690 1.49905 1.29092 1.75375 1.20270 0.92811 1.02221 0.93079 0.85427 1.22199 1.00275 1.01765 0.94169 1.23237 0.81736 0.98737 0.97630 1.85973 1.23087 1.77501 1.37899 1.18874 0.89624 0.97230 0.86616 1.20875 0.89609 1.06374 1.01560 1.21272 1.00162 0.96600 0.91993 1.21293 0.96055 1.03238 0.97473 1.20952 0.93131 0.96948 0.98178 1.19446 0.94976 1.08874 0.92892 1.21592 0.94978 0.96630 0.87452 1.21808 0.93823 0.96714 1.03140 0.93377 0.79768 0.96313 0.96288 0.90398 0.91511 0.90702 0.89480 0.87359 0.91904 0.86984 0.89624 0.84850 0.83963 0.82622 0.84149 0.86910 0.90034 0.90205 0.89677 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.66 13.97 21.65 0.30 -62.36 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 43.26 27.73 68.60 1.90 45.16 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.25 -9.67 6.52 99.48 0.65 -9.03 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.24 10.47 84.04 0.88 -12.36 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -33.15 5.12 -343.44 -1.76 -34.91 16 10 C 0.16 5.64 5.65 86.38 0.49 6.13 16 11 C -0.09 -2.15 2.19 -10.77 -0.02 -2.18 16 12 C -0.13 -2.65 5.25 30.67 0.16 -2.49 16 13 C 0.10 1.62 6.27 86.36 0.54 2.16 16 14 N -0.60 -11.75 2.97 -818.90 -2.43 -14.18 16 15 C 0.52 11.91 5.98 87.66 0.52 12.43 16 16 O -0.57 -17.48 14.55 -3.01 -0.04 -17.52 16 17 C -0.06 -1.13 1.89 -12.24 -0.02 -1.16 16 18 H 0.13 1.64 6.26 -2.39 -0.01 1.62 16 19 C -0.15 -2.28 5.42 30.75 0.17 -2.12 16 20 C 0.06 0.81 7.03 72.12 0.51 1.32 16 21 O -0.33 -6.61 10.27 -91.74 -0.94 -7.55 16 22 C 0.12 2.61 6.47 22.52 0.15 2.75 16 23 C -0.17 -3.08 9.94 22.42 0.22 -2.85 16 24 C -0.08 -1.32 10.04 22.22 0.22 -1.09 16 25 C -0.16 -2.92 10.04 22.25 0.22 -2.70 16 26 C -0.07 -1.59 8.34 22.30 0.19 -1.41 16 27 C -0.16 -3.46 5.12 -19.74 -0.10 -3.56 16 28 C 0.12 2.32 6.41 86.36 0.55 2.87 16 29 C -0.12 -2.47 5.36 30.67 0.16 -2.31 16 30 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 31 H 0.37 14.94 4.71 -92.71 -0.44 14.50 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.75 7.15 -2.39 -0.02 1.73 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.18 5.12 -2.39 -0.01 1.16 16 39 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.11 1.33 7.82 -2.39 -0.02 1.31 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.11 2.48 7.15 -2.91 -0.02 2.46 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.08 1.82 7.04 -2.39 -0.02 1.80 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.98 388.03 2.78 -73.20 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.45 Total: 28.20 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.31 Total: -10.03 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -3.89 Total: -111.45 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.99 Total: -25.07 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.90 Total: 45.16 kcal Total: -75.98 2.78 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206608534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.125 kcal (2) G-P(sol) polarization free energy of solvation -75.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds