Wall clock time and date at job start Wed Apr 1 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99993 * 2 1 4 4 H 1.48495 * 109.47142 * 270.00130 * 3 2 1 5 5 H 1.48497 * 109.47057 * 30.00302 * 3 2 1 6 6 H 1.48497 * 109.46793 * 149.99832 * 3 2 1 7 7 C 1.38811 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.53046 * 109.45876 * 184.99998 * 11 10 9 13 13 C 1.53190 * 109.31232 * 178.61645 * 12 11 10 14 14 N 1.46930 * 108.77693 * 54.63350 * 13 12 11 15 15 C 1.34776 * 120.62775 * 126.36730 * 14 13 12 16 16 O 1.21280 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99950 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47302 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.12751 * 306.69160 * 18 17 15 20 20 O 1.44108 * 110.15963 * 68.44554 * 18 17 15 21 21 C 1.43945 * 104.86016 * 90.68314 * 20 18 17 22 22 C 1.51080 * 106.01517 * 28.46065 * 21 20 18 23 23 C 1.37971 * 132.68842 * 162.30429 * 22 21 20 24 24 C 1.38299 * 119.91915 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04191 * 359.95804 * 24 23 22 26 26 C 1.38302 * 120.04185 * 0.02562 * 25 24 23 27 27 C 1.37964 * 119.91549 * 359.97438 * 26 25 24 28 28 C 1.46921 * 118.74029 * 306.64721 * 14 13 12 29 29 C 1.52761 * 109.01085 * 53.30526 * 28 14 13 30 30 H 0.97003 * 119.99653 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00160 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47056 * 60.00794 * 10 9 7 33 33 H 1.08992 * 109.47268 * 300.00173 * 10 9 7 34 34 H 1.08994 * 109.46336 * 304.97497 * 11 10 9 35 35 H 1.08999 * 109.49287 * 58.66714 * 12 11 10 36 36 H 1.09001 * 109.52432 * 298.58400 * 12 11 10 37 37 H 1.09002 * 109.58615 * 294.85274 * 13 12 11 38 38 H 1.08994 * 109.58840 * 174.42619 * 13 12 11 39 39 H 1.09000 * 109.47709 * 59.99359 * 17 15 14 40 40 H 1.09002 * 109.47038 * 299.99801 * 17 15 14 41 41 H 1.09002 * 110.15634 * 269.29957 * 21 20 18 42 42 H 1.09004 * 110.15146 * 147.61359 * 21 20 18 43 43 H 1.08000 * 120.04093 * 359.95911 * 23 22 21 44 44 H 1.07998 * 119.97852 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.97773 * 180.02562 * 25 24 23 46 46 H 1.07995 * 120.03916 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.58865 * 173.14335 * 28 14 13 48 48 H 1.09001 * 109.58459 * 293.56820 * 28 14 13 49 49 H 1.09001 * 109.56632 * 185.55411 * 29 28 14 50 50 H 1.08999 * 109.35942 * 65.49520 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8251 -6.1414 0.1246 13 6 0.8247 -7.3010 0.1584 14 7 -0.0410 -7.2135 -1.0256 15 6 -0.1817 -8.2682 -1.8528 16 8 0.4095 -9.3020 -1.6232 17 6 -1.0728 -8.1627 -3.0635 18 6 -1.0564 -9.4890 -3.8260 19 1 -0.0300 -9.7830 -4.0452 20 8 -1.7135 -10.5136 -3.0546 21 6 -3.0918 -10.4587 -3.4661 22 6 -3.0820 -9.9512 -4.8891 23 6 -4.0210 -9.9816 -5.8995 24 6 -3.7273 -9.4251 -7.1311 25 6 -2.4946 -8.8381 -7.3491 26 6 -1.5535 -8.8073 -6.3362 27 6 -1.8465 -9.3625 -5.1076 28 6 -0.7453 -5.9524 -1.2941 29 6 0.2684 -4.8096 -1.3086 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8904 34 1 0.3798 -4.7131 0.8406 35 1 2.4097 -6.1383 1.0445 36 1 2.4916 -6.2606 -0.7297 37 1 0.2172 -7.2333 1.0609 38 1 1.3632 -8.2486 0.1481 39 1 -0.7110 -7.3654 -3.7126 40 1 -2.0914 -7.9389 -2.7465 41 1 -3.6477 -9.7731 -2.8266 42 1 -3.5358 -11.4534 -3.4252 43 1 -4.9837 -10.4404 -5.7294 44 1 -4.4613 -9.4487 -7.9229 45 1 -2.2664 -8.4035 -8.3111 46 1 -0.5905 -8.3492 -6.5067 47 1 -1.2423 -6.0104 -2.2625 48 1 -1.4834 -5.7725 -0.5125 49 1 -0.2550 -3.8587 -1.4088 50 1 0.9492 -4.9412 -2.1496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206903450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:02 Heat of formation + Delta-G solvation = -39.664057 kcal Electronic energy + Delta-G solvation = -29803.560709 eV Core-core repulsion = 25795.731356 eV Total energy + Delta-G solvation = -4007.829353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.29970 -40.00711 -37.94481 -37.37692 -34.91537 -33.10214 -32.59535 -31.65067 -31.31708 -30.35482 -30.09668 -27.21870 -26.35941 -24.53993 -23.58508 -23.16170 -21.99155 -21.82974 -21.20161 -20.15900 -18.87425 -17.56823 -17.08792 -16.96718 -16.62265 -16.36625 -15.83177 -15.47487 -15.20639 -14.75908 -14.53811 -14.22345 -14.16692 -13.94346 -13.74184 -13.56621 -13.45876 -13.36248 -13.05028 -12.90730 -12.59249 -12.42414 -12.29713 -12.21287 -11.97566 -11.81496 -11.60155 -11.20464 -11.12144 -11.00452 -10.85314 -10.41563 -10.37043 -10.29536 -10.26222 -10.00082 -9.73997 -9.65604 -9.28456 -8.95057 -8.88461 -8.58248 -6.92789 -5.78490 -3.06413 0.82988 0.93770 2.63188 2.94314 3.29321 3.42213 3.47658 3.49139 3.63484 3.82020 4.20193 4.48005 4.52319 4.57714 4.64606 4.69063 4.83457 4.87935 5.00941 5.02323 5.04332 5.12250 5.14115 5.15522 5.21447 5.29746 5.38273 5.45667 5.52138 5.55133 5.58861 5.64096 5.66176 5.82875 5.96169 5.97106 5.98552 6.02160 6.06708 6.09277 6.19190 6.27959 6.44501 6.45272 6.46936 6.54747 6.64125 6.80484 6.91484 7.40713 7.69076 8.17971 8.41058 9.52220 10.10367 10.45129 11.44553 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.002157 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.414997 B =12977.237546 C =14333.007454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.610 5.610 15 C 0.519 3.481 16 O -0.536 6.536 17 C -0.155 4.155 18 C 0.139 3.861 19 H 0.112 0.888 20 O -0.335 6.335 21 C 0.082 3.918 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.089 4.089 27 C -0.125 4.125 28 C 0.105 3.895 29 C -0.125 4.125 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 -21.743 -11.869 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.344 5.344 15 C 0.307 3.693 16 O -0.413 6.413 17 C -0.195 4.195 18 C 0.080 3.920 19 H 0.130 0.870 20 O -0.253 6.253 21 C 0.005 3.995 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.017 4.017 29 C -0.164 4.164 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.019 -22.322 -11.555 26.383 hybrid contribution -0.060 1.399 -0.186 1.413 sum -8.079 -20.922 -11.741 25.316 Atomic orbital electron populations 1.69651 1.05082 1.25614 1.58027 1.24725 0.95533 0.97655 1.03148 0.86195 0.78673 0.83869 0.77503 1.21753 1.21783 1.20795 1.19237 0.91045 0.84233 1.42372 0.91266 1.42377 1.05805 0.99992 1.89462 1.20671 0.93177 0.85368 0.97746 1.21302 0.97851 0.94453 0.97644 1.21912 0.97760 0.94096 1.02670 1.21605 0.92455 1.00003 0.86831 1.48163 1.47162 1.12833 1.26206 1.20332 0.82025 0.83081 0.83880 1.90703 1.47820 1.28797 1.73977 1.22145 1.01511 0.99290 0.96578 1.21056 0.97727 0.87442 0.85728 0.87004 1.89329 1.18774 1.54781 1.62433 1.21822 0.85606 1.02039 0.90003 1.21112 0.95086 1.00067 0.96480 1.20414 0.98818 1.00009 0.92167 1.21168 0.97129 0.98019 0.96896 1.21173 0.93592 0.99484 0.99110 1.20477 0.99944 0.98959 0.91361 1.20980 0.96191 0.99845 0.95510 1.21785 0.95035 0.83262 1.01661 1.21854 0.98044 0.98188 0.98278 0.93550 0.78291 0.96359 0.96443 0.90990 0.90682 0.91631 0.91629 0.89235 0.87568 0.88462 0.90647 0.88461 0.85705 0.85441 0.85334 0.85476 0.90141 0.91143 0.89303 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.06 5.32 -59.91 -0.32 -18.38 16 10 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 11 C -0.09 -1.43 2.19 -90.57 -0.20 -1.63 16 12 C -0.13 -1.64 5.36 -26.61 -0.14 -1.78 16 13 C 0.11 1.42 6.43 -3.71 -0.02 1.40 16 14 N -0.61 -7.63 2.98 -173.04 -0.52 -8.15 16 15 C 0.52 6.87 7.61 -10.99 -0.08 6.79 16 16 O -0.54 -8.91 14.98 -3.36 -0.05 -8.96 16 17 C -0.16 -1.57 3.72 -27.88 -0.10 -1.67 16 18 C 0.14 1.50 2.92 -27.69 -0.08 1.42 16 19 H 0.11 1.29 7.92 -51.93 -0.41 0.88 16 20 O -0.34 -4.17 10.92 -44.15 -0.48 -4.65 16 21 C 0.08 0.74 7.37 36.19 0.27 1.00 16 22 C -0.13 -1.14 6.32 -104.40 -0.66 -1.80 16 23 C -0.10 -0.71 10.04 -39.66 -0.40 -1.11 16 24 C -0.11 -0.77 10.05 -39.55 -0.40 -1.17 16 25 C -0.12 -0.82 10.05 -39.55 -0.40 -1.21 16 26 C -0.09 -0.73 10.04 -39.66 -0.40 -1.13 16 27 C -0.12 -1.18 5.62 -104.40 -0.59 -1.77 16 28 C 0.11 1.21 6.31 -3.94 -0.02 1.18 16 29 C -0.13 -1.78 5.23 -26.83 -0.14 -1.92 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.38 9.79 6.84 -40.82 -0.28 9.51 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.19 7.00 -51.93 -0.36 0.83 16 39 H 0.11 0.91 7.68 -51.93 -0.40 0.51 16 40 H 0.10 0.88 7.77 -51.93 -0.40 0.48 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 50 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -33.68 398.64 -11.30 -44.98 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.00 Total: 6.58 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.64 Total: -7.58 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.11 Total: -53.62 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.53 Total: -13.61 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.68 -11.30 -44.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206903450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.316 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds