Wall clock time and date at job start Wed Apr 1 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99993 * 2 1 4 4 H 1.48495 * 109.47142 * 270.00130 * 3 2 1 5 5 H 1.48497 * 109.47057 * 30.00302 * 3 2 1 6 6 H 1.48497 * 109.46793 * 149.99832 * 3 2 1 7 7 C 1.38811 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00248 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.53046 * 109.45876 * 184.99998 * 11 10 9 13 13 C 1.53190 * 109.31232 * 178.61645 * 12 11 10 14 14 N 1.46930 * 108.77693 * 54.63350 * 13 12 11 15 15 C 1.34776 * 120.62775 * 126.36730 * 14 13 12 16 16 O 1.21280 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99950 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47302 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.12751 * 306.69160 * 18 17 15 20 20 O 1.44108 * 110.15963 * 68.44554 * 18 17 15 21 21 C 1.43945 * 104.86016 * 90.68314 * 20 18 17 22 22 C 1.51080 * 106.01517 * 28.46065 * 21 20 18 23 23 C 1.37971 * 132.68842 * 162.30429 * 22 21 20 24 24 C 1.38299 * 119.91915 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04191 * 359.95804 * 24 23 22 26 26 C 1.38302 * 120.04185 * 0.02562 * 25 24 23 27 27 C 1.37964 * 119.91549 * 359.97438 * 26 25 24 28 28 C 1.46921 * 118.74029 * 306.64721 * 14 13 12 29 29 C 1.52761 * 109.01085 * 53.30526 * 28 14 13 30 30 H 0.97003 * 119.99653 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00160 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47056 * 60.00794 * 10 9 7 33 33 H 1.08992 * 109.47268 * 300.00173 * 10 9 7 34 34 H 1.08994 * 109.46336 * 304.97497 * 11 10 9 35 35 H 1.08999 * 109.49287 * 58.66714 * 12 11 10 36 36 H 1.09001 * 109.52432 * 298.58400 * 12 11 10 37 37 H 1.09002 * 109.58615 * 294.85274 * 13 12 11 38 38 H 1.08994 * 109.58840 * 174.42619 * 13 12 11 39 39 H 1.09000 * 109.47709 * 59.99359 * 17 15 14 40 40 H 1.09002 * 109.47038 * 299.99801 * 17 15 14 41 41 H 1.09002 * 110.15634 * 269.29957 * 21 20 18 42 42 H 1.09004 * 110.15146 * 147.61359 * 21 20 18 43 43 H 1.08000 * 120.04093 * 359.95911 * 23 22 21 44 44 H 1.07998 * 119.97852 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.97773 * 180.02562 * 25 24 23 46 46 H 1.07995 * 120.03916 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.58865 * 173.14335 * 28 14 13 48 48 H 1.09001 * 109.58459 * 293.56820 * 28 14 13 49 49 H 1.09001 * 109.56632 * 185.55411 * 29 28 14 50 50 H 1.08999 * 109.35942 * 65.49520 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 6 1.8251 -6.1414 0.1246 13 6 0.8247 -7.3010 0.1584 14 7 -0.0410 -7.2135 -1.0256 15 6 -0.1817 -8.2682 -1.8528 16 8 0.4095 -9.3020 -1.6232 17 6 -1.0728 -8.1627 -3.0635 18 6 -1.0564 -9.4890 -3.8260 19 1 -0.0300 -9.7830 -4.0452 20 8 -1.7135 -10.5136 -3.0546 21 6 -3.0918 -10.4587 -3.4661 22 6 -3.0820 -9.9512 -4.8891 23 6 -4.0210 -9.9816 -5.8995 24 6 -3.7273 -9.4251 -7.1311 25 6 -2.4946 -8.8381 -7.3491 26 6 -1.5535 -8.8073 -6.3362 27 6 -1.8465 -9.3625 -5.1076 28 6 -0.7453 -5.9524 -1.2941 29 6 0.2684 -4.8096 -1.3086 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8904 34 1 0.3798 -4.7131 0.8406 35 1 2.4097 -6.1383 1.0445 36 1 2.4916 -6.2606 -0.7297 37 1 0.2172 -7.2333 1.0609 38 1 1.3632 -8.2486 0.1481 39 1 -0.7110 -7.3654 -3.7126 40 1 -2.0914 -7.9389 -2.7465 41 1 -3.6477 -9.7731 -2.8266 42 1 -3.5358 -11.4534 -3.4252 43 1 -4.9837 -10.4404 -5.7294 44 1 -4.4613 -9.4487 -7.9229 45 1 -2.2664 -8.4035 -8.3111 46 1 -0.5905 -8.3492 -6.5067 47 1 -1.2423 -6.0104 -2.2625 48 1 -1.4834 -5.7725 -0.5125 49 1 -0.2550 -3.8587 -1.4088 50 1 0.9492 -4.9412 -2.1496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206903450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:01 Heat of formation + Delta-G solvation = -58.922900 kcal Electronic energy + Delta-G solvation = -29804.395835 eV Core-core repulsion = 25795.731356 eV Total energy + Delta-G solvation = -4008.664479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.03902 -40.99600 -38.98091 -38.21757 -36.53564 -34.53347 -33.58234 -32.45997 -32.25886 -31.92692 -30.91553 -28.38468 -27.42408 -25.67457 -24.89749 -24.26277 -23.23455 -22.47297 -22.09968 -21.33346 -19.94386 -19.15421 -18.34638 -17.76827 -17.33026 -17.24697 -16.71470 -16.54520 -16.34712 -16.02258 -15.62616 -15.47861 -15.33025 -15.12600 -14.89870 -14.66595 -14.47864 -14.14826 -14.03141 -13.90762 -13.81202 -13.55040 -13.40531 -13.08728 -12.93652 -12.88460 -12.81322 -12.74795 -12.26643 -12.17793 -12.12826 -11.95349 -11.77719 -11.67987 -11.50886 -11.31861 -11.04734 -10.92683 -10.79202 -9.84922 -9.65508 -9.55763 -8.97509 -7.94552 -5.22255 0.25180 0.38529 1.48012 1.48940 1.57435 1.61184 1.97665 2.56558 2.72494 2.90489 3.15895 3.38962 3.49450 3.61413 3.76476 3.77587 3.87423 3.95911 3.99702 4.11480 4.18148 4.20216 4.29349 4.35058 4.39889 4.43572 4.44606 4.55112 4.58515 4.59874 4.67221 4.73742 4.80970 4.82590 4.86743 4.92622 4.96683 5.05319 5.07994 5.08861 5.17484 5.29743 5.39811 5.44187 5.48077 5.54310 5.54349 5.59397 5.77979 5.99745 6.28550 6.39465 7.15699 7.35352 8.11401 8.35953 9.28786 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.002157 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.414997 B =12977.237546 C =14333.007454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.157 3.843 11 C -0.084 4.084 12 C -0.115 4.115 13 C 0.115 3.885 14 N -0.609 5.609 15 C 0.516 3.484 16 O -0.574 6.574 17 C -0.147 4.147 18 C 0.139 3.861 19 H 0.094 0.906 20 O -0.367 6.367 21 C 0.078 3.922 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.100 4.100 27 C -0.141 4.141 28 C 0.112 3.888 29 C -0.119 4.119 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.017 0.983 33 H 0.015 0.985 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.137 0.863 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -21.873 -13.052 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.103 4.103 12 C -0.153 4.153 13 C -0.008 4.008 14 N -0.342 5.342 15 C 0.306 3.694 16 O -0.454 6.454 17 C -0.187 4.187 18 C 0.081 3.919 19 H 0.111 0.889 20 O -0.286 6.286 21 C 0.002 3.998 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.118 4.118 27 C -0.142 4.142 28 C -0.010 4.010 29 C -0.158 4.158 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.163 0.837 44 H 0.171 0.829 45 H 0.168 0.832 46 H 0.154 0.846 47 H 0.124 0.876 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.812 -22.465 -12.740 27.288 hybrid contribution 0.219 1.381 0.159 1.408 sum -8.593 -21.084 -12.581 26.012 Atomic orbital electron populations 1.69793 1.06407 1.26048 1.59486 1.25505 0.96417 1.00865 1.03752 0.85186 0.77691 0.79727 0.77438 1.21373 1.22105 1.19749 1.19605 0.91399 0.85550 1.41206 0.91091 1.42546 1.05689 1.00948 1.89291 1.20811 0.93888 0.85025 0.97221 1.21187 0.97060 0.93769 0.98267 1.21807 0.97614 0.92836 1.03070 1.21577 0.92527 0.99193 0.87470 1.48240 1.46964 1.13024 1.25989 1.20856 0.81754 0.82466 0.84369 1.90685 1.49485 1.30282 1.74958 1.22138 1.01498 0.99652 0.95362 1.20982 0.97038 0.87313 0.86589 0.88855 1.89281 1.20601 1.55526 1.63164 1.21975 0.84227 1.03094 0.90493 1.21215 0.95450 1.00576 0.96734 1.20725 0.99370 0.99810 0.91967 1.21543 0.97517 0.96936 0.97260 1.21502 0.93467 0.99146 0.99661 1.20709 1.00814 0.99037 0.91202 1.20933 0.96384 1.01348 0.95496 1.21795 0.94162 0.81547 1.03509 1.21741 0.98301 0.98323 0.97400 0.93961 0.79084 0.96537 0.96735 0.91305 0.89633 0.92053 0.90492 0.89959 0.85749 0.87029 0.89719 0.87309 0.83671 0.82929 0.83220 0.84553 0.87628 0.90227 0.91445 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.92 13.06 21.65 0.28 -57.63 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -36.79 5.32 -343.46 -1.83 -38.62 16 10 C 0.16 6.13 5.65 86.38 0.49 6.62 16 11 C -0.08 -2.51 2.19 -10.76 -0.02 -2.53 16 12 C -0.11 -2.87 5.36 30.67 0.16 -2.70 16 13 C 0.11 2.76 6.43 86.36 0.56 3.32 16 14 N -0.61 -14.52 2.98 -819.75 -2.44 -16.96 16 15 C 0.52 13.36 7.61 87.66 0.67 14.03 16 16 O -0.57 -19.33 14.98 5.50 0.08 -19.24 16 17 C -0.15 -2.82 3.72 29.85 0.11 -2.71 16 18 C 0.14 3.02 2.92 29.97 0.09 3.10 16 19 H 0.09 2.27 7.92 -2.39 -0.02 2.25 16 20 O -0.37 -9.24 10.92 -140.45 -1.53 -10.77 16 21 C 0.08 1.35 7.37 71.36 0.53 1.88 16 22 C -0.14 -2.33 6.32 -19.72 -0.12 -2.45 16 23 C -0.10 -1.27 10.04 22.22 0.22 -1.05 16 24 C -0.11 -1.25 10.05 22.29 0.22 -1.02 16 25 C -0.12 -1.42 10.05 22.29 0.22 -1.20 16 26 C -0.10 -1.49 10.04 22.22 0.22 -1.27 16 27 C -0.14 -2.57 5.62 -19.72 -0.11 -2.68 16 28 C 0.11 2.37 6.31 86.22 0.54 2.92 16 29 C -0.12 -3.28 5.23 30.53 0.16 -3.12 16 30 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.38 19.49 6.84 -92.71 -0.63 18.85 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 2.15 7.00 -2.39 -0.02 2.14 16 39 H 0.12 1.91 7.68 -2.39 -0.02 1.89 16 40 H 0.11 1.83 7.77 -2.39 -0.02 1.81 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 46 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.11 1.73 5.93 -2.39 -0.01 1.72 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.07 2.18 7.15 -2.39 -0.02 2.17 16 50 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.69 398.64 2.14 -70.55 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.30 Total: 30.29 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.25 Total: -5.34 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -3.98 Total: -113.21 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.45 Total: -30.02 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.69 2.14 -70.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206903450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.631 kcal (2) G-P(sol) polarization free energy of solvation -72.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds