Wall clock time and date at job start Wed Apr 1 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47027 * 300.00272 * 3 2 1 6 6 H 1.48495 * 109.47158 * 59.99965 * 3 2 1 7 7 C 1.38815 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99734 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99732 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49878 * 35.06664 * 10 9 7 12 12 C 1.53045 * 109.52364 * 155.14660 * 10 9 7 13 13 C 1.53042 * 109.53802 * 181.33381 * 12 10 9 14 14 C 1.53627 * 109.23999 * 298.51051 * 13 12 10 15 15 N 1.46925 * 108.54550 * 54.85721 * 14 13 12 16 16 C 1.34776 * 120.63161 * 126.36687 * 15 14 13 17 17 O 1.21283 * 119.99836 * 179.72343 * 16 15 14 18 18 C 1.50697 * 120.00040 * 359.72067 * 16 15 14 19 19 O 1.42897 * 109.46945 * 179.97438 * 18 16 15 20 20 C 1.42905 * 113.99679 * 179.97438 * 19 18 16 21 21 C 1.50708 * 109.46932 * 180.02562 * 20 19 18 22 22 C 1.32566 * 119.99894 * 135.00623 * 21 20 19 23 23 C 1.47814 * 119.99877 * 180.27676 * 22 21 20 24 24 C 1.39534 * 120.13955 * 359.44350 * 23 22 21 25 25 C 1.37977 * 119.85314 * 179.74219 * 24 23 22 26 26 C 1.38343 * 120.14094 * 0.51444 * 25 24 23 27 27 C 1.38340 * 120.28731 * 359.76484 * 26 25 24 28 28 C 1.37981 * 120.14283 * 359.97278 * 27 26 25 29 29 C 1.46933 * 118.73469 * 306.09718 * 15 14 13 30 30 H 0.96993 * 119.99984 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00610 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46113 * 301.35008 * 12 10 9 33 33 H 1.08991 * 109.45816 * 61.32654 * 12 10 9 34 34 H 1.09002 * 109.49932 * 58.58022 * 13 12 10 35 35 H 1.08994 * 109.50109 * 178.64823 * 13 12 10 36 36 H 1.09001 * 109.73847 * 295.11916 * 14 13 12 37 37 H 1.09006 * 109.66463 * 174.54916 * 14 13 12 38 38 H 1.09005 * 109.46951 * 59.99942 * 18 16 15 39 39 H 1.09000 * 109.47343 * 299.99959 * 18 16 15 40 40 H 1.08999 * 109.46800 * 60.00819 * 20 19 18 41 41 H 1.08996 * 109.47360 * 300.00066 * 20 19 18 42 42 H 1.08001 * 119.99800 * 314.99866 * 21 20 19 43 43 H 1.08002 * 119.99775 * 359.97438 * 22 21 20 44 44 H 1.08007 * 120.07361 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.92978 * 180.25378 * 25 24 23 46 46 H 1.07995 * 119.85675 * 179.74035 * 26 25 24 47 47 H 1.07997 * 119.93162 * 180.02562 * 27 26 25 48 48 H 1.07997 * 120.07161 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.58474 * 173.64731 * 29 15 14 50 50 H 1.09003 * 109.58219 * 293.92268 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9684 -3.5513 0.5898 12 6 1.1804 -4.7541 0.6057 13 6 1.9573 -6.0724 0.6364 14 6 2.3183 -6.4808 -0.7999 15 7 3.0407 -5.3697 -1.4341 16 6 4.2448 -5.5705 -2.0053 17 8 4.8289 -4.6461 -2.5300 18 6 4.8655 -6.9437 -1.9919 19 8 6.1309 -6.9009 -2.6543 20 6 6.8074 -8.1589 -2.6970 21 6 8.1234 -7.9975 -3.4136 22 6 9.2223 -8.5440 -2.9126 23 6 10.5141 -8.3806 -3.6122 24 6 10.5781 -7.6615 -4.8063 25 6 11.7879 -7.5081 -5.4517 26 6 12.9340 -8.0744 -4.9229 27 6 12.8763 -8.7934 -3.7424 28 6 11.6736 -8.9496 -3.0844 29 6 2.4228 -4.0366 -1.4390 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 0.8992 -4.4747 1.6211 33 1 0.2821 -4.8763 0.0007 34 1 2.8685 -5.9441 1.2206 35 1 1.3403 -6.8478 1.0902 36 1 1.4088 -6.6933 -1.3618 37 1 2.9538 -7.3662 -0.7808 38 1 4.2090 -7.6442 -2.5081 39 1 5.0055 -7.2691 -0.9611 40 1 6.1912 -8.8850 -3.2273 41 1 6.9881 -8.5090 -1.6807 42 1 8.1710 -7.4368 -4.3354 43 1 9.1746 -9.1045 -1.9906 44 1 9.6833 -7.2221 -5.2221 45 1 11.8396 -6.9483 -6.3738 46 1 13.8778 -7.9550 -5.4341 47 1 13.7746 -9.2327 -3.3346 48 1 11.6299 -9.5108 -2.1627 49 1 3.1272 -3.3088 -1.8418 50 1 1.5230 -4.0533 -2.0542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208411254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:12 Heat of formation + Delta-G solvation = -24.523675 kcal Electronic energy + Delta-G solvation = -28369.960976 eV Core-core repulsion = 24362.788159 eV Total energy + Delta-G solvation = -4007.172817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.02833 -39.53301 -38.17748 -37.02363 -34.87389 -34.49165 -32.33785 -31.33310 -31.22535 -30.80906 -29.04893 -27.65320 -25.91179 -24.62528 -23.88333 -23.27037 -22.26785 -21.91382 -20.40427 -19.77260 -18.80154 -17.74311 -17.18495 -17.09263 -16.58095 -16.39991 -15.85615 -15.38561 -15.19970 -14.91897 -14.66067 -14.33867 -14.18898 -14.00476 -13.71913 -13.55088 -13.45450 -13.31438 -13.14864 -12.95397 -12.57218 -12.43963 -12.36485 -12.13621 -11.72061 -11.43405 -11.35814 -11.16600 -11.06405 -10.85483 -10.68135 -10.64985 -10.59607 -10.16879 -9.95551 -9.82411 -9.73811 -9.47656 -9.29306 -9.07463 -8.46828 -8.35647 -6.99828 -5.78455 -3.08206 0.54430 1.06945 2.06719 2.77571 2.86372 3.45369 3.52033 3.54680 3.57333 3.76215 4.35808 4.43679 4.58589 4.59855 4.62853 4.71303 4.78155 4.82353 4.89045 4.95102 4.98350 5.01553 5.08221 5.09667 5.18975 5.21210 5.26259 5.47869 5.50728 5.57467 5.61040 5.68028 5.77037 5.90133 5.92576 6.00768 6.05764 6.14560 6.17567 6.19208 6.23483 6.33025 6.43032 6.47934 6.63948 6.66807 6.81252 6.86448 7.02044 7.62551 7.73494 8.38056 8.41167 9.51811 10.05320 10.40618 11.43822 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.001758 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.657849 B =15926.073971 C =17605.162376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.607 5.607 16 C 0.509 3.491 17 O -0.519 6.519 18 C 0.046 3.954 19 O -0.358 6.358 20 C 0.089 3.911 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.110 4.110 29 C 0.094 3.906 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.091 0.909 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.922 -26.110 -5.378 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.343 5.343 16 C 0.295 3.705 17 O -0.394 6.394 18 C -0.034 4.034 19 O -0.276 6.276 20 C 0.013 3.987 21 C -0.150 4.150 22 C -0.132 4.132 23 C -0.054 4.054 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.128 4.128 29 C -0.030 4.030 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.109 0.891 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.440 -25.259 -5.734 31.226 hybrid contribution -0.076 0.634 0.099 0.646 sum 17.365 -24.625 -5.635 30.654 Atomic orbital electron populations 1.69668 1.05117 1.25653 1.57586 1.24747 0.95523 0.97765 1.02659 0.86118 0.79018 0.83966 0.77154 1.20391 1.21778 1.21854 1.19330 0.91170 0.83957 1.42853 0.90950 1.42379 1.05801 0.99589 1.88083 1.20497 0.94925 0.86465 0.92433 0.93104 1.21823 0.98692 0.94059 1.01877 1.21962 1.00989 0.98291 0.95644 1.21850 0.96991 0.88721 0.94168 1.48248 1.18398 1.11266 1.56377 1.20130 0.81320 0.89857 0.79154 1.90742 1.61090 1.43804 1.43792 1.22288 0.86554 0.96342 0.98177 1.88071 1.31305 1.30164 1.78064 1.21487 0.91749 0.86385 0.99094 1.23109 0.92744 0.98968 1.00202 1.21586 0.90880 1.01305 0.99381 1.19027 0.93281 0.98133 0.94958 1.21407 0.98312 0.98472 0.94914 1.21128 0.92619 0.99705 1.00123 1.21235 0.98455 0.98011 0.96333 1.21100 0.97748 0.99327 0.95714 1.21267 0.92087 0.99590 0.99866 1.22804 0.97766 0.81389 1.01066 0.93524 0.78066 0.91352 0.91983 0.91523 0.90963 0.91140 0.90621 0.90467 0.90355 0.91831 0.92402 0.85860 0.86123 0.85519 0.85849 0.86095 0.85963 0.85835 0.89085 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -17.85 5.13 -53.31 -0.27 -18.12 16 10 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.92 5.35 -26.69 -0.14 -2.06 16 13 C -0.13 -1.45 6.10 -26.38 -0.16 -1.61 16 14 C 0.11 1.11 6.37 -3.49 -0.02 1.09 16 15 N -0.61 -9.20 2.97 -172.50 -0.51 -9.71 16 16 C 0.51 8.31 7.78 -10.99 -0.09 8.22 16 17 O -0.52 -11.19 15.91 -14.36 -0.23 -11.41 16 18 C 0.05 0.52 4.76 36.00 0.17 0.69 16 19 O -0.36 -4.73 9.86 -55.14 -0.54 -5.28 16 20 C 0.09 0.78 6.36 36.01 0.23 1.01 16 21 C -0.13 -1.21 9.31 -36.21 -0.34 -1.55 16 22 C -0.11 -0.94 9.51 -37.57 -0.36 -1.30 16 23 C -0.05 -0.48 5.87 -105.02 -0.62 -1.10 16 24 C -0.11 -1.01 9.40 -39.19 -0.37 -1.38 16 25 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 26 C -0.12 -0.89 10.04 -39.51 -0.40 -1.29 16 27 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 28 C -0.11 -0.86 9.79 -39.19 -0.38 -1.25 16 29 C 0.09 1.79 6.01 -3.71 -0.02 1.76 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.39 10.03 7.80 -40.82 -0.32 9.71 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 38 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 39 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 42 H 0.12 1.17 6.04 -52.49 -0.32 0.86 16 43 H 0.12 0.78 7.92 -52.49 -0.42 0.36 16 44 H 0.13 1.04 6.17 -52.48 -0.32 0.71 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.09 2.06 7.01 -51.93 -0.36 1.70 16 50 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -35.36 410.68 -11.28 -46.64 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.88 Total: 6.79 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.73 Total: -5.60 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.06 Total: -55.21 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.77 Total: -16.69 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.36 -11.28 -46.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208411254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.117 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds