Wall clock time and date at job start Wed Apr 1 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47027 * 300.00272 * 3 2 1 6 6 H 1.48495 * 109.47158 * 59.99965 * 3 2 1 7 7 C 1.38815 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99734 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99732 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49878 * 35.06664 * 10 9 7 12 12 C 1.53045 * 109.52364 * 155.14660 * 10 9 7 13 13 C 1.53042 * 109.53802 * 181.33381 * 12 10 9 14 14 C 1.53627 * 109.23999 * 298.51051 * 13 12 10 15 15 N 1.46925 * 108.54550 * 54.85721 * 14 13 12 16 16 C 1.34776 * 120.63161 * 126.36687 * 15 14 13 17 17 O 1.21283 * 119.99836 * 179.72343 * 16 15 14 18 18 C 1.50697 * 120.00040 * 359.72067 * 16 15 14 19 19 O 1.42897 * 109.46945 * 179.97438 * 18 16 15 20 20 C 1.42905 * 113.99679 * 179.97438 * 19 18 16 21 21 C 1.50708 * 109.46932 * 180.02562 * 20 19 18 22 22 C 1.32566 * 119.99894 * 135.00623 * 21 20 19 23 23 C 1.47814 * 119.99877 * 180.27676 * 22 21 20 24 24 C 1.39534 * 120.13955 * 359.44350 * 23 22 21 25 25 C 1.37977 * 119.85314 * 179.74219 * 24 23 22 26 26 C 1.38343 * 120.14094 * 0.51444 * 25 24 23 27 27 C 1.38340 * 120.28731 * 359.76484 * 26 25 24 28 28 C 1.37981 * 120.14283 * 359.97278 * 27 26 25 29 29 C 1.46933 * 118.73469 * 306.09718 * 15 14 13 30 30 H 0.96993 * 119.99984 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00610 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46113 * 301.35008 * 12 10 9 33 33 H 1.08991 * 109.45816 * 61.32654 * 12 10 9 34 34 H 1.09002 * 109.49932 * 58.58022 * 13 12 10 35 35 H 1.08994 * 109.50109 * 178.64823 * 13 12 10 36 36 H 1.09001 * 109.73847 * 295.11916 * 14 13 12 37 37 H 1.09006 * 109.66463 * 174.54916 * 14 13 12 38 38 H 1.09005 * 109.46951 * 59.99942 * 18 16 15 39 39 H 1.09000 * 109.47343 * 299.99959 * 18 16 15 40 40 H 1.08999 * 109.46800 * 60.00819 * 20 19 18 41 41 H 1.08996 * 109.47360 * 300.00066 * 20 19 18 42 42 H 1.08001 * 119.99800 * 314.99866 * 21 20 19 43 43 H 1.08002 * 119.99775 * 359.97438 * 22 21 20 44 44 H 1.08007 * 120.07361 * 0.02562 * 24 23 22 45 45 H 1.07998 * 119.92978 * 180.25378 * 25 24 23 46 46 H 1.07995 * 119.85675 * 179.74035 * 26 25 24 47 47 H 1.07997 * 119.93162 * 180.02562 * 27 26 25 48 48 H 1.07997 * 120.07161 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.58474 * 173.64731 * 29 15 14 50 50 H 1.09003 * 109.58219 * 293.92268 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9684 -3.5513 0.5898 12 6 1.1804 -4.7541 0.6057 13 6 1.9573 -6.0724 0.6364 14 6 2.3183 -6.4808 -0.7999 15 7 3.0407 -5.3697 -1.4341 16 6 4.2448 -5.5705 -2.0053 17 8 4.8289 -4.6461 -2.5300 18 6 4.8655 -6.9437 -1.9919 19 8 6.1309 -6.9009 -2.6543 20 6 6.8074 -8.1589 -2.6970 21 6 8.1234 -7.9975 -3.4136 22 6 9.2223 -8.5440 -2.9126 23 6 10.5141 -8.3806 -3.6122 24 6 10.5781 -7.6615 -4.8063 25 6 11.7879 -7.5081 -5.4517 26 6 12.9340 -8.0744 -4.9229 27 6 12.8763 -8.7934 -3.7424 28 6 11.6736 -8.9496 -3.0844 29 6 2.4228 -4.0366 -1.4390 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 0.8992 -4.4747 1.6211 33 1 0.2821 -4.8763 0.0007 34 1 2.8685 -5.9441 1.2206 35 1 1.3403 -6.8478 1.0902 36 1 1.4088 -6.6933 -1.3618 37 1 2.9538 -7.3662 -0.7808 38 1 4.2090 -7.6442 -2.5081 39 1 5.0055 -7.2691 -0.9611 40 1 6.1912 -8.8850 -3.2273 41 1 6.9881 -8.5090 -1.6807 42 1 8.1710 -7.4368 -4.3354 43 1 9.1746 -9.1045 -1.9906 44 1 9.6833 -7.2221 -5.2221 45 1 11.8396 -6.9483 -6.3738 46 1 13.8778 -7.9550 -5.4341 47 1 13.7746 -9.2327 -3.3346 48 1 11.6299 -9.5108 -2.1627 49 1 3.1272 -3.3088 -1.8418 50 1 1.5230 -4.0533 -2.0542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208411254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:11 Heat of formation + Delta-G solvation = -45.898758 kcal Electronic energy + Delta-G solvation = -28370.887869 eV Core-core repulsion = 24362.788159 eV Total energy + Delta-G solvation = -4008.099710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.24742 -40.11170 -39.16227 -38.28203 -36.23195 -35.51587 -33.96482 -32.71886 -31.89935 -31.52030 -30.47268 -28.85633 -26.68544 -25.91178 -25.63521 -23.85926 -23.25120 -22.85169 -21.79288 -20.51682 -19.95534 -19.14165 -18.56908 -18.00502 -17.55593 -17.26513 -16.88487 -16.53842 -16.22438 -15.98379 -15.78320 -15.51184 -15.44680 -15.25710 -15.02987 -14.70340 -14.26253 -14.16452 -14.00124 -13.89068 -13.88077 -13.64460 -13.28221 -13.18090 -13.05768 -12.93182 -12.52121 -12.33019 -12.19488 -12.04388 -11.97227 -11.88807 -11.74960 -11.67661 -11.34222 -11.29094 -11.13700 -10.75353 -10.66494 -9.87706 -9.75727 -9.07823 -9.03082 -8.01234 -5.30127 -0.06585 0.48496 1.41041 1.43070 1.43465 1.53399 1.57030 1.82205 2.51003 2.88377 3.03118 3.31964 3.52155 3.76409 3.82784 3.86454 4.01385 4.07072 4.09322 4.10970 4.19349 4.24574 4.26829 4.27721 4.34852 4.39094 4.41081 4.46749 4.53671 4.61828 4.62444 4.68327 4.77026 4.88569 4.91367 5.04860 5.05711 5.12591 5.16590 5.34411 5.38959 5.42024 5.45205 5.48138 5.56242 5.60159 5.62578 5.83437 6.07810 6.11928 6.22254 6.47549 7.17694 7.28671 8.01125 8.26332 9.21490 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.001758 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.657849 B =15926.073971 C =17605.162376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.063 0.937 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.122 4.122 14 C 0.099 3.901 15 N -0.604 5.604 16 C 0.497 3.503 17 O -0.589 6.589 18 C 0.055 3.945 19 O -0.401 6.401 20 C 0.089 3.911 21 C -0.154 4.154 22 C -0.106 4.106 23 C -0.077 4.077 24 C -0.134 4.134 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.116 4.116 29 C 0.108 3.892 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.042 0.958 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.758 -29.777 -4.296 34.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.338 5.338 16 C 0.286 3.714 17 O -0.469 6.469 18 C -0.024 4.024 19 O -0.320 6.320 20 C 0.014 3.986 21 C -0.172 4.172 22 C -0.124 4.124 23 C -0.077 4.077 24 C -0.152 4.152 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.134 4.134 29 C -0.018 4.018 30 H 0.062 0.938 31 H 0.211 0.789 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.161 0.839 44 H 0.140 0.860 45 H 0.153 0.847 46 H 0.160 0.840 47 H 0.164 0.836 48 H 0.162 0.838 49 H 0.061 0.939 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.282 -29.010 -4.632 34.602 hybrid contribution -0.248 1.700 -0.267 1.739 sum 18.034 -27.310 -4.899 33.091 Atomic orbital electron populations 1.69787 1.06233 1.26110 1.59107 1.25467 0.96414 1.00730 1.03381 0.85176 0.77963 0.80236 0.77022 1.20003 1.21813 1.21263 1.19539 0.90980 0.85582 1.41619 0.91900 1.42514 1.05542 1.00626 1.88272 1.20676 0.94696 0.86179 0.92785 0.95201 1.21747 0.98493 0.94610 1.00859 1.21965 1.00959 0.96610 0.96471 1.22308 0.98329 0.88241 0.93310 1.48297 1.18508 1.10725 1.56293 1.21266 0.80918 0.91556 0.77622 1.90710 1.62883 1.46473 1.46785 1.22370 0.86492 0.92780 1.00736 1.88026 1.32312 1.32955 1.78722 1.21681 0.91225 0.85093 1.00628 1.23157 0.93834 0.99927 1.00281 1.21786 0.90197 1.00672 0.99696 1.19288 0.94241 0.98834 0.95294 1.21567 0.98725 0.99265 0.95662 1.21378 0.92707 1.00116 1.00737 1.21568 0.99014 0.97465 0.96555 1.21463 0.98512 0.98947 0.95547 1.21576 0.91876 0.99384 1.00583 1.22196 0.96481 0.83261 0.99878 0.93790 0.78948 0.92092 0.91414 0.91657 0.86796 0.89335 0.85873 0.86419 0.86722 0.89570 0.90065 0.87535 0.83911 0.86025 0.84732 0.84036 0.83608 0.83848 0.93927 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.43 13.06 21.65 0.28 -59.15 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 48.31 29.55 68.60 2.03 50.34 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.25 -14.32 9.93 84.03 0.83 -13.49 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -37.64 5.13 -322.57 -1.65 -39.29 16 10 C 0.17 6.74 2.92 45.07 0.13 6.87 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.12 -3.45 5.35 30.62 0.16 -3.28 16 13 C -0.12 -2.21 6.10 30.82 0.19 -2.03 16 14 C 0.10 1.64 6.37 86.51 0.55 2.19 16 15 N -0.60 -17.59 2.97 -818.05 -2.43 -20.02 16 16 C 0.50 15.93 7.78 87.66 0.68 16.62 16 17 O -0.59 -26.66 15.91 16.00 0.25 -26.41 16 18 C 0.06 1.05 4.76 71.23 0.34 1.39 16 19 O -0.40 -10.01 9.86 -129.94 -1.28 -11.29 16 20 C 0.09 1.34 6.36 71.24 0.45 1.80 16 21 C -0.15 -2.74 9.31 24.54 0.23 -2.51 16 22 C -0.11 -1.63 9.51 23.65 0.22 -1.41 16 23 C -0.08 -1.34 5.87 -20.12 -0.12 -1.46 16 24 C -0.13 -2.49 9.40 22.52 0.21 -2.28 16 25 C -0.13 -2.10 10.03 22.23 0.22 -1.88 16 26 C -0.13 -1.73 10.04 22.32 0.22 -1.51 16 27 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 28 C -0.12 -1.65 9.79 22.52 0.22 -1.43 16 29 C 0.11 4.25 6.01 86.36 0.52 4.77 16 30 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.38 20.34 7.80 -92.71 -0.72 19.62 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 0.97 5.93 -2.38 -0.01 0.95 16 38 H 0.12 1.31 7.93 -2.38 -0.02 1.29 16 39 H 0.12 1.37 7.70 -2.39 -0.02 1.36 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.82 7.88 -2.39 -0.02 0.81 16 42 H 0.11 2.18 6.04 -2.91 -0.02 2.17 16 43 H 0.14 1.47 7.92 -2.91 -0.02 1.44 16 44 H 0.12 2.23 6.17 -2.91 -0.02 2.21 16 45 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 47 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 49 H 0.04 2.08 7.01 -2.39 -0.02 2.06 16 50 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -84.18 410.68 3.18 -81.00 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.21 Total: 27.35 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.77 Total: -2.54 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -3.80 Total: -118.46 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.03 Total: -37.70 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -84.18 3.18 -81.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208411254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.099 kcal (2) G-P(sol) polarization free energy of solvation -84.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds