Wall clock time and date at job start Wed Apr 1 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48491 * 109.47247 * 240.00521 * 3 2 1 5 5 H 1.48505 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46926 * 120.00397 * 3 2 1 7 7 C 1.38803 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00206 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65017 * 179.97438 * 9 7 2 11 11 C 1.54912 * 104.83245 * 204.16098 * 10 9 7 12 12 H 1.09003 * 111.00347 * 81.06232 * 11 10 9 13 13 N 1.46503 * 111.00581 * 204.91323 * 11 10 9 14 14 C 1.34776 * 119.99666 * 264.13619 * 13 11 10 15 15 O 1.21276 * 120.00274 * 5.45589 * 14 13 11 16 16 C 1.50700 * 119.99536 * 185.45034 * 14 13 11 17 17 C 1.52996 * 112.85365 * 293.07199 * 16 14 13 18 18 C 1.50700 * 109.46878 * 304.50913 * 17 16 14 19 19 C 1.38241 * 119.99730 * 274.12002 * 18 17 16 20 20 C 1.38237 * 119.99785 * 179.74701 * 19 18 17 21 21 C 1.38238 * 119.99929 * 0.54980 * 20 19 18 22 22 C 1.38233 * 119.99904 * 359.70601 * 21 20 19 23 23 C 1.38226 * 120.00465 * 94.39838 * 18 17 16 24 24 C 1.53788 * 113.61442 * 161.76307 * 16 14 13 25 25 C 1.53782 * 87.08100 * 220.02236 * 24 16 14 26 26 C 1.53780 * 87.08467 * 25.43115 * 25 24 16 27 27 C 1.55154 * 101.58256 * 322.98884 * 11 10 9 28 28 H 1.08995 * 110.72520 * 153.86279 * 27 11 10 29 29 O 1.42900 * 110.71708 * 277.13980 * 27 11 10 30 30 C 1.47023 * 125.64638 * 0.02562 * 9 7 2 31 31 H 0.97006 * 119.99996 * 359.97438 * 1 2 3 32 32 H 1.09009 * 110.36578 * 322.99447 * 10 9 7 33 33 H 1.08997 * 110.37528 * 85.21162 * 10 9 7 34 34 H 0.96994 * 119.99441 * 84.13831 * 13 11 10 35 35 H 1.09000 * 109.47175 * 64.50737 * 17 16 14 36 36 H 1.09001 * 109.47398 * 184.50890 * 17 16 14 37 37 H 1.07999 * 120.00118 * 0.02562 * 19 18 17 38 38 H 1.07995 * 119.99892 * 180.27786 * 20 19 18 39 39 H 1.07998 * 119.99976 * 179.72389 * 21 20 19 40 40 H 1.07995 * 119.99711 * 180.02562 * 22 21 20 41 41 H 1.08008 * 120.00050 * 359.97438 * 23 18 17 42 42 H 1.09000 * 113.60759 * 334.57222 * 24 16 14 43 43 H 1.08995 * 113.61289 * 105.46633 * 24 16 14 44 44 H 1.08997 * 113.61199 * 270.87872 * 25 24 16 45 45 H 1.08996 * 113.68653 * 139.99396 * 25 24 16 46 46 H 1.08990 * 113.61778 * 220.01808 * 26 25 24 47 47 H 1.09005 * 113.68951 * 89.12343 * 26 25 24 48 48 H 0.96710 * 113.99777 * 174.97188 * 29 27 11 49 49 H 1.08996 * 109.88571 * 59.49206 * 30 9 7 50 50 H 1.09004 * 109.88012 * 298.32054 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9335 -3.7310 -0.0016 11 6 0.8518 -4.6554 -0.6141 12 1 0.8564 -4.5945 -1.7024 13 7 1.0291 -6.0393 -0.1670 14 6 1.7070 -6.9142 -0.9361 15 8 2.2544 -6.5338 -1.9492 16 6 1.7847 -8.3653 -0.5370 17 6 2.5914 -8.5868 0.7440 18 6 3.9657 -7.9901 0.5817 19 6 4.9758 -8.7301 -0.0041 20 6 6.2350 -8.1808 -0.1578 21 6 6.4872 -6.8957 0.2846 22 6 5.4785 -6.1576 0.8752 23 6 4.2178 -6.7049 1.0237 24 6 2.1865 -9.3006 -1.6897 25 6 1.1463 -10.2926 -1.1429 26 6 0.4222 -9.0784 -0.5379 27 6 -0.4484 -4.0441 -0.0284 28 1 -1.2986 -4.2508 -0.6784 29 8 -0.6882 -4.5357 1.2917 30 6 -0.1375 -2.5327 -0.0005 31 1 -0.4850 0.8401 0.0004 32 1 2.8329 -3.7399 -0.6174 33 1 2.1685 -4.0421 1.0163 34 1 0.6586 -6.3257 0.6824 35 1 2.0836 -8.1072 1.5808 36 1 2.6801 -9.6559 0.9374 37 1 4.7799 -9.7357 -0.3457 38 1 7.0229 -8.7573 -0.6195 39 1 7.4721 -6.4682 0.1686 40 1 5.6754 -5.1534 1.2204 41 1 3.4297 -6.1281 1.4851 42 1 1.9396 -8.9085 -2.6763 43 1 3.2126 -9.6619 -1.6214 44 1 1.5472 -10.9784 -0.3967 45 1 0.5742 -10.7997 -1.9198 46 1 0.0239 -9.2603 0.4602 47 1 -0.3076 -8.6247 -1.2086 48 1 -1.4459 -4.1269 1.7321 49 1 -0.5577 -2.0514 -0.8836 50 1 -0.5542 -2.0852 0.9019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219818140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:30 Heat of formation + Delta-G solvation = -13.799511 kcal Electronic energy + Delta-G solvation = -31594.102498 eV Core-core repulsion = 27587.394716 eV Total energy + Delta-G solvation = -4006.707782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87591 -38.94658 -38.40737 -37.17200 -34.80974 -33.88209 -32.66811 -31.61012 -30.81330 -28.77067 -27.99531 -26.92911 -25.76341 -25.05112 -24.14899 -22.51737 -21.41202 -21.11280 -20.41961 -19.96693 -18.67196 -17.47084 -16.98188 -16.74405 -16.40943 -15.60013 -15.45194 -15.09762 -15.03012 -14.81208 -14.44858 -14.22521 -14.00521 -13.47713 -13.31338 -13.19411 -13.04317 -12.75173 -12.56219 -12.54661 -12.43321 -12.21886 -12.16497 -11.73917 -11.26360 -11.25639 -11.13522 -10.94436 -10.90949 -10.82243 -10.63839 -10.49642 -10.45267 -10.32608 -10.12742 -9.80706 -9.39590 -9.23472 -8.81542 -8.67124 -8.63726 -8.54846 -6.86815 -5.74482 -3.07310 1.40993 1.49879 2.93164 3.40125 3.42941 3.44927 3.47873 3.83375 4.26815 4.36027 4.49614 4.58950 4.63883 4.66351 4.83699 4.93454 5.07113 5.11809 5.19019 5.28478 5.33043 5.35663 5.41042 5.50675 5.55346 5.56799 5.64422 5.70922 5.72758 5.74660 5.76009 5.89257 5.89790 6.00731 6.09587 6.11314 6.14209 6.24551 6.27484 6.52490 6.60747 6.66921 6.68109 6.70565 6.98457 7.08795 7.33768 7.44196 7.72465 7.93282 8.08759 8.20406 8.59496 9.18339 9.78697 10.43318 11.37676 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003580 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.557599 B = 7818.326471 C = 9431.437346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.135 3.865 11 C 0.139 3.861 12 H 0.102 0.898 13 N -0.706 5.706 14 C 0.528 3.472 15 O -0.539 6.539 16 C -0.099 4.099 17 C -0.052 4.052 18 C -0.084 4.084 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.112 4.112 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.142 4.142 26 C -0.124 4.124 27 C 0.067 3.933 28 H 0.059 0.941 29 O -0.568 6.568 30 C 0.154 3.846 31 H 0.253 0.747 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.379 0.621 49 H 0.055 0.945 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -21.703 2.202 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.007 3.993 11 C 0.034 3.966 12 H 0.120 0.880 13 N -0.357 5.357 14 C 0.314 3.686 15 O -0.415 6.415 16 C -0.102 4.102 17 C -0.090 4.090 18 C -0.084 4.084 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.150 4.150 25 C -0.179 4.179 26 C -0.162 4.162 27 C 0.007 3.993 28 H 0.077 0.923 29 O -0.374 6.374 30 C 0.029 3.971 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.240 0.760 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.227 0.773 49 H 0.073 0.927 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.085 -21.541 1.314 21.800 hybrid contribution -0.231 1.404 0.478 1.501 sum 2.855 -20.137 1.792 20.417 Atomic orbital electron populations 1.69904 1.04896 1.25197 1.57497 1.24771 0.95751 0.97649 1.02237 0.86169 0.78458 0.83023 0.77967 1.21102 1.21580 1.21162 1.19037 0.90497 0.82226 1.43489 0.90393 1.44270 1.01220 0.99932 1.87289 1.21797 0.94585 0.85698 0.97177 1.22304 0.95016 0.79974 0.99348 0.88010 1.45739 1.56170 1.10234 1.23557 1.20235 0.77845 0.86981 0.83588 1.90690 1.44916 1.79383 1.26516 1.22112 0.98221 0.92189 0.97681 1.20350 0.91811 1.01528 0.95283 1.19699 0.94934 0.94658 0.99104 1.20943 0.92978 0.99677 0.99515 1.21065 0.96887 0.95783 1.00365 1.21128 0.99196 0.94728 0.99009 1.21179 0.93252 0.99775 0.98846 1.21117 0.97091 0.94568 0.99399 1.22863 0.99577 0.94794 0.97751 1.22848 0.98221 0.96292 1.00560 1.22953 0.94829 0.96319 1.02087 1.23508 0.95668 0.96871 0.83219 0.92339 1.86229 1.54477 1.67232 1.29479 1.21868 0.85599 0.87800 1.01865 0.93702 0.93988 0.95842 0.76015 0.90210 0.89832 0.86412 0.86434 0.86394 0.86013 0.86046 0.89194 0.90816 0.89972 0.91144 0.90555 0.89579 0.77313 0.92739 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.81 10.31 55.49 0.57 -26.24 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 10 C 0.13 2.96 6.92 -2.53 -0.02 2.94 16 11 C 0.14 2.61 3.31 -65.78 -0.22 2.39 16 12 H 0.10 2.09 7.53 -51.93 -0.39 1.70 16 13 N -0.71 -10.81 5.15 -51.73 -0.27 -11.07 16 14 C 0.53 8.18 5.54 -10.99 -0.06 8.12 16 15 O -0.54 -10.66 15.83 5.56 0.09 -10.57 16 16 C -0.10 -1.11 0.80 -154.84 -0.12 -1.24 16 17 C -0.05 -0.53 4.75 -27.89 -0.13 -0.66 16 18 C -0.08 -1.04 4.56 -104.63 -0.48 -1.51 16 19 C -0.11 -1.30 8.80 -39.58 -0.35 -1.65 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.11 -1.56 10.05 -39.58 -0.40 -1.95 16 23 C -0.10 -1.45 9.10 -39.59 -0.36 -1.81 16 24 C -0.11 -1.20 6.78 -25.91 -0.18 -1.37 16 25 C -0.14 -1.12 7.73 -25.92 -0.20 -1.32 16 26 C -0.12 -1.12 7.22 -25.92 -0.19 -1.31 16 27 C 0.07 1.21 4.20 -24.89 -0.10 1.11 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 O -0.57 -8.91 12.17 -35.23 -0.43 -9.34 16 30 C 0.15 3.61 5.13 -3.06 -0.02 3.59 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 5.56 7.62 -40.82 -0.31 5.25 16 35 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 36 H 0.08 0.66 7.28 -51.93 -0.38 0.28 16 37 H 0.12 1.09 7.05 -52.49 -0.37 0.72 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.09 1.12 7.74 -51.93 -0.40 0.72 16 43 H 0.07 0.75 6.07 -51.93 -0.32 0.43 16 44 H 0.08 0.53 7.61 -51.93 -0.40 0.14 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 48 H 0.38 4.71 9.09 45.56 0.41 5.12 16 49 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 50 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -33.21 398.47 -10.60 -43.82 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.10 Total: 11.42 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -3.87 Total: -5.23 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.27 Total: -53.33 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.34 Total: -19.90 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.21 -10.60 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219818140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.016 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds