Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48491 * 109.47247 * 240.00521 * 3 2 1 5 5 H 1.48505 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46926 * 120.00397 * 3 2 1 7 7 C 1.38803 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00206 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65017 * 179.97438 * 9 7 2 11 11 C 1.54912 * 104.83245 * 204.16098 * 10 9 7 12 12 H 1.09003 * 111.00347 * 81.06232 * 11 10 9 13 13 N 1.46503 * 111.00581 * 204.91323 * 11 10 9 14 14 C 1.34776 * 119.99666 * 264.13619 * 13 11 10 15 15 O 1.21276 * 120.00274 * 5.45589 * 14 13 11 16 16 C 1.50700 * 119.99536 * 185.45034 * 14 13 11 17 17 C 1.52996 * 112.85365 * 293.07199 * 16 14 13 18 18 C 1.50700 * 109.46878 * 304.50913 * 17 16 14 19 19 C 1.38241 * 119.99730 * 274.12002 * 18 17 16 20 20 C 1.38237 * 119.99785 * 179.74701 * 19 18 17 21 21 C 1.38238 * 119.99929 * 0.54980 * 20 19 18 22 22 C 1.38233 * 119.99904 * 359.70601 * 21 20 19 23 23 C 1.38226 * 120.00465 * 94.39838 * 18 17 16 24 24 C 1.53788 * 113.61442 * 161.76307 * 16 14 13 25 25 C 1.53782 * 87.08100 * 220.02236 * 24 16 14 26 26 C 1.53780 * 87.08467 * 25.43115 * 25 24 16 27 27 C 1.55154 * 101.58256 * 322.98884 * 11 10 9 28 28 H 1.08995 * 110.72520 * 153.86279 * 27 11 10 29 29 O 1.42900 * 110.71708 * 277.13980 * 27 11 10 30 30 C 1.47023 * 125.64638 * 0.02562 * 9 7 2 31 31 H 0.97006 * 119.99996 * 359.97438 * 1 2 3 32 32 H 1.09009 * 110.36578 * 322.99447 * 10 9 7 33 33 H 1.08997 * 110.37528 * 85.21162 * 10 9 7 34 34 H 0.96994 * 119.99441 * 84.13831 * 13 11 10 35 35 H 1.09000 * 109.47175 * 64.50737 * 17 16 14 36 36 H 1.09001 * 109.47398 * 184.50890 * 17 16 14 37 37 H 1.07999 * 120.00118 * 0.02562 * 19 18 17 38 38 H 1.07995 * 119.99892 * 180.27786 * 20 19 18 39 39 H 1.07998 * 119.99976 * 179.72389 * 21 20 19 40 40 H 1.07995 * 119.99711 * 180.02562 * 22 21 20 41 41 H 1.08008 * 120.00050 * 359.97438 * 23 18 17 42 42 H 1.09000 * 113.60759 * 334.57222 * 24 16 14 43 43 H 1.08995 * 113.61289 * 105.46633 * 24 16 14 44 44 H 1.08997 * 113.61199 * 270.87872 * 25 24 16 45 45 H 1.08996 * 113.68653 * 139.99396 * 25 24 16 46 46 H 1.08990 * 113.61778 * 220.01808 * 26 25 24 47 47 H 1.09005 * 113.68951 * 89.12343 * 26 25 24 48 48 H 0.96710 * 113.99777 * 174.97188 * 29 27 11 49 49 H 1.08996 * 109.88571 * 59.49206 * 30 9 7 50 50 H 1.09004 * 109.88012 * 298.32054 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9335 -3.7310 -0.0016 11 6 0.8518 -4.6554 -0.6141 12 1 0.8564 -4.5945 -1.7024 13 7 1.0291 -6.0393 -0.1670 14 6 1.7070 -6.9142 -0.9361 15 8 2.2544 -6.5338 -1.9492 16 6 1.7847 -8.3653 -0.5370 17 6 2.5914 -8.5868 0.7440 18 6 3.9657 -7.9901 0.5817 19 6 4.9758 -8.7301 -0.0041 20 6 6.2350 -8.1808 -0.1578 21 6 6.4872 -6.8957 0.2846 22 6 5.4785 -6.1576 0.8752 23 6 4.2178 -6.7049 1.0237 24 6 2.1865 -9.3006 -1.6897 25 6 1.1463 -10.2926 -1.1429 26 6 0.4222 -9.0784 -0.5379 27 6 -0.4484 -4.0441 -0.0284 28 1 -1.2986 -4.2508 -0.6784 29 8 -0.6882 -4.5357 1.2917 30 6 -0.1375 -2.5327 -0.0005 31 1 -0.4850 0.8401 0.0004 32 1 2.8329 -3.7399 -0.6174 33 1 2.1685 -4.0421 1.0163 34 1 0.6586 -6.3257 0.6824 35 1 2.0836 -8.1072 1.5808 36 1 2.6801 -9.6559 0.9374 37 1 4.7799 -9.7357 -0.3457 38 1 7.0229 -8.7573 -0.6195 39 1 7.4721 -6.4682 0.1686 40 1 5.6754 -5.1534 1.2204 41 1 3.4297 -6.1281 1.4851 42 1 1.9396 -8.9085 -2.6763 43 1 3.2126 -9.6619 -1.6214 44 1 1.5472 -10.9784 -0.3967 45 1 0.5742 -10.7997 -1.9198 46 1 0.0239 -9.2603 0.4602 47 1 -0.3076 -8.6247 -1.2086 48 1 -1.4459 -4.1269 1.7321 49 1 -0.5577 -2.0514 -0.8836 50 1 -0.5542 -2.0852 0.9019 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219818140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -36.025803 kcal Electronic energy + Delta-G solvation = -31595.066302 eV Core-core repulsion = 27587.394716 eV Total energy + Delta-G solvation = -4007.671587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90080 -40.22109 -39.59064 -38.39895 -36.45707 -35.40313 -33.70218 -33.39597 -31.76359 -30.43438 -29.30798 -28.41082 -26.63075 -26.48156 -25.51623 -23.47726 -22.57577 -22.31098 -22.02311 -21.47467 -19.76703 -19.07500 -18.29647 -18.17051 -17.38287 -16.91532 -16.77236 -16.45472 -16.08730 -16.04773 -15.85653 -15.62408 -15.29234 -14.80448 -14.70038 -14.45505 -14.31306 -14.16193 -13.95105 -13.89491 -13.33232 -13.28094 -13.19286 -13.15443 -12.82407 -12.76044 -12.55746 -12.30359 -12.17864 -12.11249 -11.97328 -11.94750 -11.89873 -11.77543 -11.38093 -11.09772 -10.90331 -10.78667 -10.50320 -10.01555 -9.78485 -9.57629 -8.96973 -7.90786 -5.26691 0.46275 0.52487 1.42790 1.46000 1.52212 1.70887 2.15614 2.47493 2.87789 3.18284 3.28035 3.43815 3.52678 3.62806 3.80224 3.87077 3.93014 3.95318 3.98824 4.02380 4.15676 4.19479 4.24210 4.28540 4.47022 4.50387 4.63200 4.64528 4.66676 4.80385 4.82175 4.83116 4.92936 4.96129 5.05282 5.11463 5.13718 5.19963 5.22287 5.29810 5.33117 5.43300 5.52469 5.57191 5.59110 5.61782 5.64848 5.71833 6.12100 6.15843 6.68157 6.85796 7.04406 7.35885 7.68491 8.32362 9.18807 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.003580 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.557599 B = 7818.326471 C = 9431.437346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.057 4.057 3 Si 0.978 3.022 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.621 5.621 10 C 0.141 3.859 11 C 0.152 3.848 12 H 0.083 0.917 13 N -0.694 5.694 14 C 0.526 3.474 15 O -0.587 6.587 16 C -0.097 4.097 17 C -0.049 4.049 18 C -0.090 4.090 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.120 4.120 27 C 0.094 3.906 28 H 0.087 0.913 29 O -0.562 6.562 30 C 0.160 3.840 31 H 0.250 0.750 32 H 0.018 0.982 33 H 0.025 0.975 34 H 0.416 0.584 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.398 0.602 49 H 0.023 0.977 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -24.848 2.947 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.250 4.250 3 Si 0.806 3.194 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.014 3.986 11 C 0.045 3.955 12 H 0.101 0.899 13 N -0.345 5.345 14 C 0.314 3.686 15 O -0.467 6.467 16 C -0.100 4.100 17 C -0.086 4.086 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.145 4.145 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.145 4.145 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.157 4.157 27 C 0.033 3.967 28 H 0.105 0.895 29 O -0.370 6.370 30 C 0.035 3.965 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.253 0.747 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.093 0.907 48 H 0.248 0.752 49 H 0.041 0.959 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.716 -24.724 2.098 24.961 hybrid contribution -0.065 2.394 0.237 2.407 sum 2.651 -22.330 2.335 22.608 Atomic orbital electron populations 1.70101 1.05992 1.25596 1.57819 1.25571 0.96726 1.00674 1.02048 0.85172 0.77300 0.78844 0.78127 1.20649 1.21334 1.20335 1.19348 0.90796 0.83758 1.43926 0.90853 1.44542 1.02479 1.00553 1.87179 1.21780 0.94749 0.85208 0.96872 1.21854 0.94131 0.81475 0.98062 0.89916 1.45596 1.56215 1.08623 1.24065 1.21149 0.76213 0.88716 0.82533 1.90669 1.46768 1.80537 1.28689 1.22234 1.00573 0.88610 0.98623 1.20451 0.90060 1.03536 0.94557 1.20000 0.96565 0.93950 0.98516 1.21342 0.92586 1.00852 0.98578 1.21468 0.97927 0.95463 0.99619 1.21381 0.99531 0.95408 0.98918 1.21308 0.94200 0.99971 1.00269 1.21155 0.96796 0.95769 1.00780 1.22900 1.00974 0.95669 0.96312 1.22830 0.96551 0.95643 1.00983 1.22985 0.93249 0.96101 1.03404 1.23103 0.96010 0.92649 0.84922 0.89535 1.86193 1.55752 1.66745 1.28341 1.21729 0.84128 0.91472 0.99197 0.94076 0.96360 0.95729 0.74660 0.89535 0.86354 0.83485 0.83725 0.84914 0.86946 0.87525 0.91807 0.90189 0.87307 0.90244 0.88125 0.90676 0.75161 0.95928 0.95337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.25 10.31 21.65 0.22 -56.03 16 2 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.25 -14.62 10.28 84.03 0.86 -13.75 16 8 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -33.28 3.39 -691.97 -2.35 -35.63 16 10 C 0.14 6.47 6.92 86.86 0.60 7.07 16 11 C 0.15 5.80 3.31 46.38 0.15 5.96 16 12 H 0.08 3.52 7.53 -2.39 -0.02 3.51 16 13 N -0.69 -20.94 5.15 -435.96 -2.24 -23.18 16 14 C 0.53 16.13 5.54 87.66 0.49 16.62 16 15 O -0.59 -23.91 15.83 -3.02 -0.05 -23.96 16 16 C -0.10 -1.97 0.80 -52.40 -0.04 -2.01 16 17 C -0.05 -0.83 4.75 29.85 0.14 -0.69 16 18 C -0.09 -2.10 4.56 -19.87 -0.09 -2.19 16 19 C -0.12 -2.39 8.80 22.27 0.20 -2.19 16 20 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 21 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 22 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 23 C -0.13 -3.65 9.10 22.27 0.20 -3.44 16 24 C -0.12 -2.29 6.78 31.12 0.21 -2.08 16 25 C -0.12 -1.42 7.73 31.12 0.24 -1.18 16 26 C -0.12 -1.73 7.22 31.12 0.22 -1.51 16 27 C 0.09 3.33 4.20 31.78 0.13 3.46 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 O -0.56 -16.62 12.17 -148.98 -1.81 -18.44 16 30 C 0.16 7.74 5.13 86.73 0.45 8.18 16 31 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.42 10.74 7.62 -92.71 -0.71 10.03 16 35 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 36 H 0.12 1.24 7.28 -2.39 -0.02 1.23 16 37 H 0.15 2.11 7.05 -2.91 -0.02 2.09 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.11 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.06 1.55 7.74 -2.39 -0.02 1.54 16 43 H 0.08 1.39 6.07 -2.39 -0.01 1.37 16 44 H 0.11 0.75 7.61 -2.39 -0.02 0.73 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 47 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 48 H 0.40 9.00 9.09 -74.05 -0.67 8.32 16 49 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 50 H 0.03 1.49 7.42 -2.38 -0.02 1.48 16 Total: -1.00 -76.35 398.47 0.28 -76.08 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.42 Total: 32.55 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.90 Total: -0.01 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.37 Total: -114.84 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.86 Total: -42.39 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.35 0.28 -76.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219818140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.053 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds