Wall clock time and date at job start Wed Apr 1 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99691 * 2 1 4 4 H 1.48506 * 109.47038 * 240.00146 * 3 2 1 5 5 H 1.48501 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46990 * 119.99999 * 3 2 1 7 7 C 1.38805 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.47527 * 125.63915 * 179.97438 * 9 7 2 11 11 C 1.54913 * 104.78125 * 204.15094 * 10 9 7 12 12 H 1.09005 * 111.00413 * 81.09178 * 11 10 9 13 13 N 1.46503 * 111.00404 * 204.89676 * 11 10 9 14 14 C 1.34771 * 120.00419 * 270.42303 * 13 11 10 15 15 O 1.21287 * 120.00073 * 354.91390 * 14 13 11 16 16 C 1.50703 * 120.00283 * 174.92004 * 14 13 11 17 17 C 1.52991 * 115.54891 * 65.37642 * 16 14 13 18 18 C 1.53005 * 109.47135 * 65.27845 * 17 16 14 19 19 C 1.50709 * 109.47002 * 174.99810 * 18 17 16 20 20 C 1.38232 * 119.99947 * 269.72599 * 19 18 17 21 21 C 1.38229 * 120.00177 * 179.78744 * 20 19 18 22 22 C 1.38237 * 119.99682 * 0.44342 * 21 20 19 23 23 C 1.38235 * 120.00127 * 359.81186 * 22 21 20 24 24 C 1.38228 * 119.99823 * 89.99969 * 19 18 17 25 25 C 1.53002 * 117.49720 * 279.70874 * 16 14 13 26 26 C 1.52997 * 117.49715 * 211.05130 * 16 14 13 27 27 C 1.55150 * 101.61917 * 322.99252 * 11 10 9 28 28 H 1.09000 * 110.71956 * 153.87677 * 27 11 10 29 29 O 1.42896 * 110.72273 * 277.15798 * 27 11 10 30 30 C 1.47024 * 125.64770 * 0.02562 * 9 7 2 31 31 H 0.96996 * 120.00433 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.37177 * 85.34260 * 10 9 7 33 33 H 1.08998 * 110.41188 * 322.98489 * 10 9 7 34 34 H 0.97001 * 119.99358 * 90.42033 * 13 11 10 35 35 H 1.09006 * 109.47306 * 185.27603 * 17 16 14 36 36 H 1.09006 * 109.47620 * 305.27702 * 17 16 14 37 37 H 1.08995 * 109.46764 * 294.99698 * 18 17 16 38 38 H 1.08995 * 109.47112 * 54.99704 * 18 17 16 39 39 H 1.08003 * 120.00160 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.00456 * 180.27012 * 21 20 19 41 41 H 1.08006 * 119.99954 * 179.82971 * 22 21 20 42 42 H 1.08000 * 119.99884 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00207 * 359.97438 * 24 19 18 44 44 H 1.09007 * 117.49590 * 0.02562 * 25 16 14 45 45 H 1.08995 * 117.50066 * 145.01725 * 25 16 14 46 46 H 1.09005 * 117.49506 * 214.97862 * 26 16 14 47 47 H 1.09002 * 117.50157 * 359.97237 * 26 16 14 48 48 H 0.96697 * 114.00354 * 179.97438 * 29 27 11 49 49 H 1.09002 * 109.87747 * 59.49634 * 30 9 7 50 50 H 1.09002 * 109.88622 * 298.33296 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 1.9343 -3.7319 -0.0028 11 6 0.8523 -4.6552 -0.6165 12 1 0.8579 -4.5939 -1.7048 13 7 1.0289 -6.0395 -0.1706 14 6 1.8118 -6.8800 -0.8756 15 8 2.2957 -6.5192 -1.9276 16 6 2.0857 -8.2682 -0.3571 17 6 0.8711 -9.1952 -0.2793 18 6 0.3505 -9.4731 -1.6910 19 6 -0.7675 -10.4817 -1.6246 20 6 -0.4866 -11.8319 -1.7178 21 6 -1.5115 -12.7572 -1.6525 22 6 -2.8183 -12.3317 -1.5031 23 6 -3.0997 -10.9811 -1.4152 24 6 -2.0742 -10.0561 -1.4761 25 6 3.1606 -8.4202 0.7212 26 6 3.4349 -8.8994 -0.7065 27 6 -0.4483 -4.0442 -0.0315 28 1 -1.2980 -4.2506 -0.6824 29 8 -0.6891 -4.5363 1.2882 30 6 -0.1374 -2.5328 -0.0028 31 1 -0.4850 0.8400 0.0004 32 1 2.1664 -4.0442 1.0154 33 1 2.8342 -3.7411 -0.6178 34 1 0.5824 -6.3511 0.6322 35 1 1.1602 -10.1342 0.1927 36 1 0.0873 -8.7187 0.3097 37 1 -0.0210 -8.5473 -2.1300 38 1 1.1596 -9.8676 -2.3055 39 1 0.5339 -12.1642 -1.8387 40 1 -1.2917 -13.8124 -1.7209 41 1 -3.6194 -13.0545 -1.4548 42 1 -4.1206 -10.6488 -1.2981 43 1 -2.2940 -9.0010 -1.4073 44 1 3.6692 -7.5160 1.0557 45 1 3.0025 -9.1809 1.4857 46 1 3.4572 -9.9752 -0.8807 47 1 4.1243 -8.3107 -1.3119 48 1 -1.4906 -4.1844 1.6991 49 1 -0.5568 -2.0511 -0.8861 50 1 -0.5550 -2.0856 0.8993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221216515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:05 Heat of formation + Delta-G solvation = -15.087675 kcal Electronic energy + Delta-G solvation = -30094.798262 eV Core-core repulsion = 26088.034621 eV Total energy + Delta-G solvation = -4006.763641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.25311 -39.40946 -38.25165 -36.70216 -34.83839 -33.95001 -33.73719 -31.63254 -31.11052 -29.55836 -28.52439 -27.17135 -25.09756 -24.38248 -22.88501 -22.79432 -22.52542 -21.10010 -20.49769 -20.06406 -19.24439 -17.35804 -16.99881 -16.84047 -16.68353 -15.66203 -15.55220 -15.33223 -15.11116 -14.82541 -14.43791 -14.10732 -13.84835 -13.77220 -13.55259 -13.40527 -13.27898 -13.14410 -12.76035 -12.59651 -12.33441 -12.28793 -12.10479 -11.64613 -11.53078 -11.30821 -11.27609 -11.04859 -10.96142 -10.83894 -10.56191 -10.49530 -10.47985 -10.21749 -10.09429 -9.81467 -9.54611 -9.30169 -9.14927 -8.89459 -8.69259 -8.61156 -6.88004 -5.75099 -3.08124 1.12625 1.17277 2.77116 3.26492 3.40750 3.44489 3.45959 3.52639 3.68148 4.33658 4.46481 4.54466 4.57902 4.67116 4.71959 4.78601 4.85083 4.89761 4.94696 5.11093 5.27424 5.29102 5.32984 5.36187 5.39249 5.43033 5.50793 5.53995 5.69661 5.72019 5.75376 5.79334 5.84416 5.87245 5.89903 6.00727 6.04519 6.10667 6.22314 6.24131 6.28755 6.44587 6.61817 6.65751 6.78564 6.94956 7.32853 7.43694 7.71786 7.86462 8.06915 8.19506 8.50702 9.17565 9.77611 10.42225 11.37122 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002372 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.251515 B =11801.768067 C =12886.273864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.132 3.868 11 C 0.138 3.862 12 H 0.103 0.897 13 N -0.702 5.702 14 C 0.547 3.453 15 O -0.541 6.541 16 C -0.157 4.157 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.145 4.145 27 C 0.068 3.932 28 H 0.060 0.940 29 O -0.567 6.567 30 C 0.155 3.845 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.042 0.958 34 H 0.407 0.593 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.379 0.621 49 H 0.055 0.945 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -25.321 0.411 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.032 3.968 12 H 0.121 0.879 13 N -0.353 5.353 14 C 0.332 3.668 15 O -0.418 6.418 16 C -0.161 4.161 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.077 4.077 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.134 4.134 25 C -0.195 4.195 26 C -0.182 4.182 27 C 0.008 3.992 28 H 0.078 0.922 29 O -0.373 6.373 30 C 0.029 3.971 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.243 0.757 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.227 0.773 49 H 0.073 0.927 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.310 -25.113 -0.464 25.334 hybrid contribution -0.415 1.155 0.506 1.327 sum -3.725 -23.958 0.042 24.246 Atomic orbital electron populations 1.69899 1.04904 1.25246 1.57451 1.24789 0.95788 0.97713 1.02233 0.86145 0.78429 0.82924 0.77968 1.21091 1.21585 1.21148 1.19041 0.90515 0.82190 1.43531 0.90351 1.44290 1.01255 0.99861 1.87327 1.21847 0.94547 0.85825 0.97346 1.22350 0.95374 0.79640 0.99413 0.87908 1.45707 1.49004 1.11086 1.29501 1.19468 0.78317 0.85049 0.83958 1.90703 1.51199 1.77252 1.22617 1.21476 0.92861 0.94880 1.06850 1.21037 0.94775 0.97933 0.96681 1.20597 0.95989 0.97877 0.97365 1.19945 0.94637 0.94295 0.98785 1.21061 0.99244 0.92587 1.00744 1.21132 0.93004 0.99418 1.00273 1.21140 0.96671 0.95887 1.00953 1.21170 0.99197 0.93277 0.99951 1.21137 0.92324 0.99877 1.00041 1.23103 1.00328 1.03737 0.92287 1.22984 0.96378 1.00860 0.98019 1.23488 0.95566 0.96890 0.83221 0.92196 1.86251 1.49183 1.71525 1.30339 1.21859 0.85525 0.87767 1.01919 0.93668 0.95643 0.93926 0.75744 0.90793 0.90894 0.90771 0.90492 0.86153 0.86260 0.86328 0.86124 0.85959 0.88165 0.87932 0.88136 0.87810 0.77329 0.92684 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.88 10.31 55.49 0.57 -26.31 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.54 3.40 -169.99 -0.58 -16.12 16 10 C 0.13 2.91 6.93 -2.47 -0.02 2.90 16 11 C 0.14 2.57 3.29 -65.78 -0.22 2.36 16 12 H 0.10 2.07 7.57 -51.93 -0.39 1.67 16 13 N -0.70 -10.79 5.17 -51.73 -0.27 -11.06 16 14 C 0.55 8.42 6.57 -10.99 -0.07 8.34 16 15 O -0.54 -10.45 16.36 5.55 0.09 -10.36 16 16 C -0.16 -1.77 1.90 -155.66 -0.30 -2.07 16 17 C -0.07 -0.62 5.07 -26.73 -0.14 -0.75 16 18 C -0.08 -0.80 5.15 -27.88 -0.14 -0.94 16 19 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 20 C -0.12 -1.02 9.70 -39.59 -0.38 -1.41 16 21 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 22 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 25 C -0.16 -1.54 9.93 -26.69 -0.26 -1.80 16 26 C -0.15 -1.48 9.78 -26.70 -0.26 -1.74 16 27 C 0.07 1.22 4.20 -24.90 -0.10 1.12 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 O -0.57 -8.92 12.14 -35.23 -0.43 -9.35 16 30 C 0.15 3.63 5.14 -3.06 -0.02 3.61 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.41 5.63 7.57 -40.82 -0.31 5.32 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 38 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 1.23 7.99 -51.93 -0.42 0.81 16 48 H 0.38 4.62 9.12 45.56 0.42 5.03 16 49 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 50 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 LS Contribution 411.12 15.07 6.20 6.20 Total: -1.00 -33.14 411.12 -11.05 -44.19 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.34 Total: 9.78 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -4.28 Total: -4.22 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.27 Total: -53.49 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.34 Total: -19.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.14 -11.05 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221216515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.105 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds