Wall clock time and date at job start Wed Apr 1 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99691 * 2 1 4 4 H 1.48506 * 109.47038 * 240.00146 * 3 2 1 5 5 H 1.48501 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46990 * 119.99999 * 3 2 1 7 7 C 1.38805 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00450 * 0.02562 * 7 2 1 10 10 C 1.47527 * 125.63915 * 179.97438 * 9 7 2 11 11 C 1.54913 * 104.78125 * 204.15094 * 10 9 7 12 12 H 1.09005 * 111.00413 * 81.09178 * 11 10 9 13 13 N 1.46503 * 111.00404 * 204.89676 * 11 10 9 14 14 C 1.34771 * 120.00419 * 270.42303 * 13 11 10 15 15 O 1.21287 * 120.00073 * 354.91390 * 14 13 11 16 16 C 1.50703 * 120.00283 * 174.92004 * 14 13 11 17 17 C 1.52991 * 115.54891 * 65.37642 * 16 14 13 18 18 C 1.53005 * 109.47135 * 65.27845 * 17 16 14 19 19 C 1.50709 * 109.47002 * 174.99810 * 18 17 16 20 20 C 1.38232 * 119.99947 * 269.72599 * 19 18 17 21 21 C 1.38229 * 120.00177 * 179.78744 * 20 19 18 22 22 C 1.38237 * 119.99682 * 0.44342 * 21 20 19 23 23 C 1.38235 * 120.00127 * 359.81186 * 22 21 20 24 24 C 1.38228 * 119.99823 * 89.99969 * 19 18 17 25 25 C 1.53002 * 117.49720 * 279.70874 * 16 14 13 26 26 C 1.52997 * 117.49715 * 211.05130 * 16 14 13 27 27 C 1.55150 * 101.61917 * 322.99252 * 11 10 9 28 28 H 1.09000 * 110.71956 * 153.87677 * 27 11 10 29 29 O 1.42896 * 110.72273 * 277.15798 * 27 11 10 30 30 C 1.47024 * 125.64770 * 0.02562 * 9 7 2 31 31 H 0.96996 * 120.00433 * 359.97438 * 1 2 3 32 32 H 1.08999 * 110.37177 * 85.34260 * 10 9 7 33 33 H 1.08998 * 110.41188 * 322.98489 * 10 9 7 34 34 H 0.97001 * 119.99358 * 90.42033 * 13 11 10 35 35 H 1.09006 * 109.47306 * 185.27603 * 17 16 14 36 36 H 1.09006 * 109.47620 * 305.27702 * 17 16 14 37 37 H 1.08995 * 109.46764 * 294.99698 * 18 17 16 38 38 H 1.08995 * 109.47112 * 54.99704 * 18 17 16 39 39 H 1.08003 * 120.00160 * 359.97438 * 20 19 18 40 40 H 1.08000 * 120.00456 * 180.27012 * 21 20 19 41 41 H 1.08006 * 119.99954 * 179.82971 * 22 21 20 42 42 H 1.08000 * 119.99884 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.00207 * 359.97438 * 24 19 18 44 44 H 1.09007 * 117.49590 * 0.02562 * 25 16 14 45 45 H 1.08995 * 117.50066 * 145.01725 * 25 16 14 46 46 H 1.09005 * 117.49506 * 214.97862 * 26 16 14 47 47 H 1.09002 * 117.50157 * 359.97237 * 26 16 14 48 48 H 0.96697 * 114.00354 * 179.97438 * 29 27 11 49 49 H 1.09002 * 109.87747 * 59.49634 * 30 9 7 50 50 H 1.09002 * 109.88622 * 298.33296 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 1.9343 -3.7319 -0.0028 11 6 0.8523 -4.6552 -0.6165 12 1 0.8579 -4.5939 -1.7048 13 7 1.0289 -6.0395 -0.1706 14 6 1.8118 -6.8800 -0.8756 15 8 2.2957 -6.5192 -1.9276 16 6 2.0857 -8.2682 -0.3571 17 6 0.8711 -9.1952 -0.2793 18 6 0.3505 -9.4731 -1.6910 19 6 -0.7675 -10.4817 -1.6246 20 6 -0.4866 -11.8319 -1.7178 21 6 -1.5115 -12.7572 -1.6525 22 6 -2.8183 -12.3317 -1.5031 23 6 -3.0997 -10.9811 -1.4152 24 6 -2.0742 -10.0561 -1.4761 25 6 3.1606 -8.4202 0.7212 26 6 3.4349 -8.8994 -0.7065 27 6 -0.4483 -4.0442 -0.0315 28 1 -1.2980 -4.2506 -0.6824 29 8 -0.6891 -4.5363 1.2882 30 6 -0.1374 -2.5328 -0.0028 31 1 -0.4850 0.8400 0.0004 32 1 2.1664 -4.0442 1.0154 33 1 2.8342 -3.7411 -0.6178 34 1 0.5824 -6.3511 0.6322 35 1 1.1602 -10.1342 0.1927 36 1 0.0873 -8.7187 0.3097 37 1 -0.0210 -8.5473 -2.1300 38 1 1.1596 -9.8676 -2.3055 39 1 0.5339 -12.1642 -1.8387 40 1 -1.2917 -13.8124 -1.7209 41 1 -3.6194 -13.0545 -1.4548 42 1 -4.1206 -10.6488 -1.2981 43 1 -2.2940 -9.0010 -1.4073 44 1 3.6692 -7.5160 1.0557 45 1 3.0025 -9.1809 1.4857 46 1 3.4572 -9.9752 -0.8807 47 1 4.1243 -8.3107 -1.3119 48 1 -1.4906 -4.1844 1.6991 49 1 -0.5568 -2.0511 -0.8861 50 1 -0.5550 -2.0856 0.8993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221216515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:03 Heat of formation + Delta-G solvation = -36.383692 kcal Electronic energy + Delta-G solvation = -30095.721727 eV Core-core repulsion = 26088.034621 eV Total energy + Delta-G solvation = -4007.687106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.42102 -40.16787 -39.67389 -37.79439 -36.47786 -35.43393 -34.48103 -33.57215 -31.71387 -30.47372 -30.11317 -28.89116 -26.67523 -25.56342 -24.03854 -23.42204 -23.31550 -22.31373 -21.76730 -21.63047 -20.48624 -19.14150 -18.33369 -17.83711 -17.59533 -16.96165 -16.76687 -16.46990 -16.23711 -15.91900 -15.84354 -15.57984 -15.11612 -14.79409 -14.59504 -14.48925 -14.34270 -14.18202 -14.10663 -13.99176 -13.89165 -13.20799 -13.18745 -12.92768 -12.84162 -12.75726 -12.40536 -12.31802 -12.22296 -12.16927 -12.01345 -11.93063 -11.88529 -11.70973 -11.33733 -11.02171 -10.90328 -10.78363 -10.73282 -10.08372 -9.76868 -9.53414 -8.97623 -7.90550 -5.26795 0.49674 0.55301 1.43642 1.47162 1.53135 1.55802 2.04355 2.47222 2.73880 2.95397 3.14858 3.28184 3.53309 3.58538 3.73459 3.81908 3.86373 3.94563 3.97707 4.00641 4.16529 4.23121 4.23532 4.35686 4.37718 4.46170 4.57113 4.63259 4.68473 4.70326 4.75830 4.77208 4.78029 4.95121 5.02584 5.03924 5.08571 5.16680 5.23862 5.25005 5.31519 5.33121 5.42922 5.48364 5.62314 5.63568 5.68340 5.79123 6.12072 6.18375 6.60626 6.85662 7.04261 7.26608 7.68155 8.32053 9.19178 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.002372 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.251515 B =11801.768067 C =12886.273864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.134 3.866 11 C 0.150 3.850 12 H 0.087 0.913 13 N -0.691 5.691 14 C 0.544 3.456 15 O -0.585 6.585 16 C -0.164 4.164 17 C -0.057 4.057 18 C -0.075 4.075 19 C -0.088 4.088 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.144 4.144 26 C -0.143 4.143 27 C 0.094 3.906 28 H 0.090 0.910 29 O -0.563 6.563 30 C 0.161 3.839 31 H 0.250 0.750 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.418 0.582 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.135 0.865 46 H 0.130 0.870 47 H 0.080 0.920 48 H 0.398 0.602 49 H 0.024 0.976 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 -28.007 1.486 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.348 5.348 10 C 0.007 3.993 11 C 0.043 3.957 12 H 0.105 0.895 13 N -0.342 5.342 14 C 0.332 3.668 15 O -0.465 6.465 16 C -0.167 4.167 17 C -0.094 4.094 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.181 4.181 26 C -0.181 4.181 27 C 0.033 3.967 28 H 0.107 0.893 29 O -0.371 6.371 30 C 0.035 3.965 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.256 0.744 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.099 0.901 48 H 0.249 0.751 49 H 0.042 0.958 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.580 -27.837 0.648 28.074 hybrid contribution -0.325 1.966 0.168 2.000 sum -3.905 -25.871 0.817 26.177 Atomic orbital electron populations 1.70101 1.06045 1.25644 1.57844 1.25626 0.96789 1.00855 1.02119 0.85125 0.77228 0.78630 0.78169 1.20537 1.21470 1.20290 1.19370 0.90889 0.83658 1.43836 0.90600 1.44575 1.02516 1.00538 1.87219 1.21876 0.95003 0.85302 0.97144 1.21914 0.94445 0.80996 0.98304 0.89514 1.45566 1.49221 1.09590 1.29866 1.20254 0.76933 0.86465 0.83135 1.90682 1.52707 1.78459 1.24648 1.21421 0.94405 0.92515 1.08384 1.21020 0.93698 0.98355 0.96359 1.20504 0.96142 0.96907 0.97723 1.19955 0.94374 0.94733 0.99710 1.21287 1.00355 0.92205 1.00457 1.21455 0.92822 1.00528 0.99431 1.21460 0.97509 0.96025 1.00217 1.21403 0.99671 0.93645 0.99866 1.21254 0.92891 1.00067 1.01009 1.23215 0.98349 1.03867 0.92628 1.23075 0.94787 1.02129 0.98063 1.23090 0.96023 0.92659 0.84890 0.89280 1.86212 1.50692 1.70975 1.29232 1.21717 0.84097 0.91468 0.99205 0.94066 0.95610 0.95632 0.74433 0.88332 0.90799 0.93278 0.90491 0.84625 0.84089 0.84335 0.84874 0.86357 0.89641 0.84740 0.85181 0.90095 0.75087 0.95808 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.34 10.31 21.65 0.22 -56.12 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -33.21 3.40 -691.72 -2.35 -35.56 16 10 C 0.13 6.08 6.93 86.84 0.60 6.68 16 11 C 0.15 5.67 3.29 46.38 0.15 5.83 16 12 H 0.09 3.60 7.57 -2.38 -0.02 3.58 16 13 N -0.69 -20.93 5.17 -435.96 -2.26 -23.19 16 14 C 0.54 16.74 6.57 87.66 0.58 17.31 16 15 O -0.59 -23.30 16.36 -3.05 -0.05 -23.35 16 16 C -0.16 -3.43 1.90 -52.93 -0.10 -3.53 16 17 C -0.06 -0.92 5.07 30.59 0.16 -0.77 16 18 C -0.08 -1.41 5.15 29.85 0.15 -1.26 16 19 C -0.09 -1.56 5.13 -19.87 -0.10 -1.66 16 20 C -0.13 -1.87 9.70 22.27 0.22 -1.65 16 21 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 25 C -0.14 -2.45 9.93 30.62 0.30 -2.15 16 26 C -0.14 -2.66 9.78 30.62 0.30 -2.36 16 27 C 0.09 3.31 4.20 31.78 0.13 3.44 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 O -0.56 -16.73 12.14 -148.98 -1.81 -18.54 16 30 C 0.16 7.74 5.14 86.73 0.45 8.19 16 31 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 34 H 0.42 10.90 7.57 -92.71 -0.70 10.20 16 35 H 0.10 1.17 8.09 -2.38 -0.02 1.15 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.05 1.15 7.81 -2.39 -0.02 1.13 16 38 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 39 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 48 H 0.40 8.84 9.12 -74.06 -0.68 8.17 16 49 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 50 H 0.03 1.46 7.43 -2.39 -0.02 1.44 16 Total: -1.00 -74.53 411.12 0.41 -74.12 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.43 Total: 29.86 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.05 Total: 4.34 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.38 Total: -114.87 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.86 Total: -41.89 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.53 0.41 -74.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221216515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.740 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds