Wall clock time and date at job start Wed Apr 1 2020 03:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00274 * 2 1 4 4 H 1.48504 * 109.46714 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47379 * 119.99536 * 3 2 1 6 6 H 1.48495 * 109.47276 * 240.00087 * 3 2 1 7 7 C 1.38818 * 120.00077 * 180.27026 * 2 1 3 8 8 H 1.07994 * 119.99882 * 195.81589 * 7 2 1 9 9 N 1.36938 * 119.99816 * 15.81209 * 7 2 1 10 10 C 1.46536 * 119.73427 * 205.17074 * 9 7 2 11 11 C 1.53964 * 107.57899 * 237.77189 * 10 9 7 12 12 C 1.53061 * 108.39823 * 299.98694 * 11 10 9 13 13 H 1.09001 * 114.44213 * 276.29986 * 12 11 10 14 14 C 1.52788 * 111.38640 * 144.15089 * 12 11 10 15 15 N 1.47286 * 87.32367 * 274.42608 * 14 12 11 16 16 C 1.34778 * 136.54575 * 150.71243 * 15 14 12 17 17 O 1.21281 * 119.99942 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99880 * 0.02562 * 16 15 14 19 19 O 1.42903 * 109.47250 * 179.97438 * 18 16 15 20 20 C 1.42897 * 114.00077 * 179.97438 * 19 18 16 21 21 C 1.52993 * 109.47088 * 179.97438 * 20 19 18 22 22 C 1.50700 * 109.47191 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00478 * 269.73087 * 22 21 20 24 24 C 1.38235 * 120.00261 * 179.81113 * 23 22 21 25 25 C 1.38235 * 119.99947 * 0.39268 * 24 23 22 26 26 C 1.38237 * 119.99753 * 359.86166 * 25 24 23 27 27 C 1.38230 * 120.00120 * 359.95319 * 26 25 24 28 28 C 1.46470 * 86.91545 * 330.71743 * 15 14 12 29 29 H 1.09002 * 111.43655 * 277.10047 * 28 15 14 30 30 C 1.45697 * 119.73333 * 25.45301 * 9 7 2 31 31 H 0.96996 * 119.99799 * 359.72786 * 1 2 3 32 32 H 1.08995 * 109.70760 * 356.13629 * 10 9 7 33 33 H 1.09005 * 109.70124 * 116.75596 * 10 9 7 34 34 H 1.08997 * 108.88116 * 180.91606 * 11 10 9 35 35 H 1.08993 * 110.98555 * 60.29875 * 11 10 9 36 36 H 1.08996 * 114.25631 * 159.76465 * 14 12 11 37 37 H 1.08997 * 113.04195 * 28.91001 * 14 12 11 38 38 H 1.08997 * 109.46942 * 300.00027 * 18 16 15 39 39 H 1.09007 * 109.46932 * 59.99788 * 18 16 15 40 40 H 1.09000 * 109.47112 * 300.00582 * 20 19 18 41 41 H 1.09000 * 109.47190 * 60.00005 * 20 19 18 42 42 H 1.09000 * 109.47647 * 300.00289 * 21 20 19 43 43 H 1.09010 * 109.47121 * 60.00153 * 21 20 19 44 44 H 1.08006 * 119.99357 * 359.97438 * 23 22 21 45 45 H 1.08000 * 119.99997 * 180.22854 * 24 23 22 46 46 H 1.07999 * 119.99828 * 179.83396 * 25 24 23 47 47 H 1.08004 * 119.99537 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.00160 * 180.02562 * 27 26 25 49 49 H 1.09004 * 108.79044 * 260.87853 * 30 9 7 50 50 H 1.08995 * 108.79311 * 19.21157 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0057 8 1 3.0596 -1.2210 0.2491 9 7 1.3645 -2.3641 -0.3343 10 6 1.8724 -3.6444 0.1657 11 6 2.1673 -4.5361 -1.0542 12 6 0.8656 -4.7325 -1.8350 13 1 0.2278 -5.5306 -1.4551 14 6 1.1209 -4.7811 -3.3407 15 7 1.0469 -3.3101 -3.3309 16 6 1.5777 -2.2990 -4.0467 17 8 1.3036 -1.1505 -3.7695 18 6 2.5120 -2.5955 -5.1914 19 8 2.9374 -1.3691 -5.7890 20 6 3.8319 -1.5388 -6.8904 21 6 4.2186 -0.1681 -7.4492 22 6 5.1624 -0.3470 -8.6103 23 6 6.5271 -0.3805 -8.3931 24 6 7.3926 -0.5485 -9.4578 25 6 6.8938 -0.6750 -10.7407 26 6 5.5292 -0.6363 -10.9586 27 6 4.6636 -0.4721 -9.8935 28 6 0.1358 -3.4424 -2.1917 29 1 -0.8853 -3.6385 -2.5189 30 6 0.1814 -2.3180 -1.1834 31 1 -0.4850 0.8400 0.0040 32 1 2.7983 -3.4823 0.7174 33 1 1.1305 -4.1043 0.8187 34 1 2.5319 -5.5022 -0.7052 35 1 2.9146 -4.0773 -1.7016 36 1 0.3237 -5.2530 -3.9150 37 1 2.1090 -5.1654 -3.5936 38 1 3.3804 -3.1396 -4.8200 39 1 1.9944 -3.2014 -5.9352 40 1 4.7278 -2.0605 -6.5538 41 1 3.3422 -2.1233 -7.6693 42 1 3.3225 0.3531 -7.7858 43 1 4.7081 0.4168 -6.6703 44 1 6.9170 -0.2779 -7.3911 45 1 8.4587 -0.5783 -9.2875 46 1 7.5701 -0.8036 -11.5728 47 1 5.1395 -0.7348 -11.9611 48 1 3.5975 -0.4423 -10.0637 49 1 -0.7059 -2.3758 -0.5528 50 1 0.1699 -1.3684 -1.7183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222103063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:08 Heat of formation + Delta-G solvation = -5.642679 kcal Electronic energy + Delta-G solvation = -30147.974997 eV Core-core repulsion = 26141.620922 eV Total energy + Delta-G solvation = -4006.354075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.96692 -40.32642 -39.63161 -38.26439 -37.04926 -34.45071 -33.95302 -31.95172 -31.79369 -31.35160 -29.79771 -28.72572 -27.64446 -25.64786 -24.55961 -24.21727 -23.47984 -22.59492 -21.91861 -21.27379 -19.50246 -18.58180 -18.01824 -17.65454 -17.55135 -17.29675 -17.12070 -16.72899 -16.21078 -15.98406 -15.84454 -15.59550 -15.20779 -15.04832 -14.69985 -14.44872 -14.30971 -14.25258 -13.95926 -13.86472 -13.72499 -13.53985 -13.32973 -13.14762 -12.77194 -12.66223 -12.44142 -12.39508 -12.28634 -12.22443 -11.99701 -11.97124 -11.84037 -11.73679 -11.49001 -11.07939 -10.74704 -10.64480 -10.30689 -9.84237 -9.66904 -9.51465 -8.66763 -7.86142 -5.28556 0.38315 0.47881 1.32341 1.41899 1.45224 1.68854 1.75915 2.47867 2.72256 2.95911 3.29956 3.48136 3.56197 3.73669 3.83619 3.93143 3.97067 4.06656 4.14299 4.15981 4.24101 4.24954 4.27673 4.29985 4.38556 4.49839 4.53517 4.58517 4.61515 4.62857 4.68594 4.77965 4.84175 4.88411 4.92010 4.96023 5.08250 5.13924 5.14450 5.16280 5.34490 5.42836 5.55659 5.56137 5.61052 5.69242 5.71132 5.81813 6.09052 6.10034 6.39334 6.96388 7.19325 7.35756 7.97298 8.34926 9.18091 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.002634 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.198801 B =10628.295033 C =12040.864529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.264 1.264 6 H -0.297 1.297 7 C -0.255 4.255 8 H 0.059 0.941 9 N -0.602 5.602 10 C 0.137 3.863 11 C -0.103 4.103 12 C -0.102 4.102 13 H 0.132 0.868 14 C 0.110 3.890 15 N -0.641 5.641 16 C 0.521 3.479 17 O -0.576 6.576 18 C 0.066 3.934 19 O -0.402 6.402 20 C 0.069 3.931 21 C -0.079 4.079 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.126 4.126 28 C 0.105 3.895 29 H 0.093 0.907 30 C 0.179 3.821 31 H 0.244 0.756 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.124 0.876 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.144 0.856 48 H 0.130 0.870 49 H -0.006 1.006 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.559 -14.766 -21.227 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.782 3.218 4 H -0.219 1.219 5 H -0.189 1.189 6 H -0.224 1.224 7 C -0.386 4.386 8 H 0.076 0.924 9 N -0.325 5.325 10 C 0.012 3.988 11 C -0.142 4.142 12 C -0.121 4.121 13 H 0.149 0.851 14 C -0.011 4.011 15 N -0.378 5.378 16 C 0.311 3.689 17 O -0.454 6.454 18 C -0.013 4.013 19 O -0.322 6.322 20 C -0.007 4.007 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.148 4.148 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.142 4.142 27 C -0.144 4.144 28 C 0.001 3.999 29 H 0.110 0.890 30 C 0.053 3.947 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.161 0.839 48 H 0.148 0.852 49 H 0.012 0.988 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.355 -13.665 -21.142 27.221 hybrid contribution 0.006 1.641 0.329 1.674 sum 10.362 -12.024 -20.813 26.175 Atomic orbital electron populations 1.70162 1.06400 1.25153 1.56150 1.25594 0.95978 1.01016 1.01480 0.85559 0.77931 0.80578 0.77759 1.21929 1.18943 1.22406 1.19322 0.92062 0.86570 1.40644 0.92368 1.43696 1.31568 1.02350 1.54920 1.21182 0.96900 0.85972 0.94733 1.21855 0.95415 1.00152 0.96745 1.22598 0.97781 0.95712 0.95979 0.85062 1.23381 1.04569 0.77577 0.95568 1.49678 1.47353 1.08189 1.32604 1.20538 0.81669 0.83746 0.82992 1.90780 1.62470 1.22846 1.69341 1.22124 0.97854 0.87523 0.93797 1.87996 1.65763 1.29560 1.48867 1.22619 0.92620 0.97630 0.87782 1.20418 0.98792 0.96714 0.95739 1.19704 0.94031 1.01059 0.94274 1.21297 0.92901 1.00552 1.00039 1.21446 1.00628 0.99453 0.92766 1.21523 0.95911 0.99525 0.97573 1.21467 0.93699 0.99379 0.99609 1.21300 1.00745 1.00234 0.92102 1.22749 0.94511 0.96605 0.86070 0.88962 1.19779 0.87798 0.96827 0.90332 0.94735 0.93373 0.94955 0.88142 0.93702 0.86331 0.88103 0.88565 0.87161 0.92003 0.91153 0.90637 0.91418 0.85790 0.84172 0.83762 0.83870 0.85172 0.98779 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.53 11.04 21.65 0.24 -61.29 16 2 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 3 Si 0.95 51.92 29.58 68.60 2.03 53.94 16 4 H -0.29 -15.91 7.11 99.48 0.71 -15.20 16 5 H -0.26 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.30 -16.70 7.11 99.48 0.71 -15.99 16 7 C -0.26 -15.53 9.52 84.03 0.80 -14.73 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 N -0.60 -32.07 3.00 -705.66 -2.12 -34.19 16 10 C 0.14 5.54 6.49 86.70 0.56 6.10 16 11 C -0.10 -2.99 5.72 30.94 0.18 -2.81 16 12 C -0.10 -2.57 4.47 -11.02 -0.05 -2.62 16 13 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.11 2.17 7.76 80.66 0.63 2.79 16 15 N -0.64 -22.08 3.27 -877.14 -2.87 -24.95 16 16 C 0.52 21.44 8.09 87.66 0.71 22.15 16 17 O -0.58 -32.47 15.74 16.00 0.25 -32.21 16 18 C 0.07 1.91 6.27 71.24 0.45 2.35 16 19 O -0.40 -13.70 9.88 -129.95 -1.28 -14.98 16 20 C 0.07 1.63 5.92 71.98 0.43 2.05 16 21 C -0.08 -1.87 5.71 29.85 0.17 -1.70 16 22 C -0.09 -1.82 5.13 -19.87 -0.10 -1.92 16 23 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 27 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 28 C 0.11 3.90 4.09 38.70 0.16 4.06 16 29 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 30 C 0.18 9.45 4.60 85.91 0.39 9.84 16 31 H 0.24 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 33 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.47 8.01 -2.39 -0.02 1.45 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 43 H 0.07 1.78 8.08 -2.38 -0.02 1.76 16 44 H 0.12 2.19 8.06 -2.91 -0.02 2.17 16 45 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 46 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 49 H -0.01 -0.32 7.99 -2.38 -0.02 -0.34 16 50 H 0.05 2.94 5.01 -2.39 -0.01 2.92 16 Total: -1.00 -91.38 404.48 3.00 -88.38 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.91 Total: 11.07 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 5.84 Total: 14.23 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -4.75 Total: -120.43 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.03 Total: -47.20 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.03 Total: 53.94 kcal Total: -91.38 3.00 -88.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222103063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.737 kcal (2) G-P(sol) polarization free energy of solvation -91.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds