Wall clock time and date at job start Wed Apr 1 2020 03:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21350 * 119.99408 * 0.02562 * 12 11 10 14 14 C 1.49445 * 119.99981 * 179.97438 * 12 11 10 15 15 O 1.21346 * 119.99959 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99983 * 180.02562 * 14 12 11 17 17 C 1.46504 * 120.00240 * 180.02562 * 16 14 12 18 18 H 1.08998 * 110.01496 * 326.38768 * 17 16 14 19 19 C 1.54263 * 110.03057 * 87.83049 * 17 16 14 20 20 C 1.54894 * 104.19411 * 95.68151 * 19 17 16 21 21 C 1.54881 * 102.75120 * 37.93638 * 20 19 17 22 22 H 1.08996 * 110.48681 * 80.74041 * 21 20 19 23 23 C 1.52998 * 110.48943 * 203.38252 * 21 20 19 24 24 C 1.50701 * 109.47108 * 289.77708 * 23 21 20 25 25 C 1.38236 * 120.00061 * 269.72230 * 24 23 21 26 26 C 1.38234 * 119.99692 * 179.76146 * 25 24 23 27 27 C 1.38235 * 120.00360 * 0.49108 * 26 25 24 28 28 C 1.38234 * 119.99694 * 359.78509 * 27 26 25 29 29 C 1.38227 * 119.99927 * 359.95946 * 28 27 26 30 30 C 1.53869 * 110.03248 * 204.99941 * 17 16 14 31 31 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 33 33 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 34 34 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 35 35 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 36 36 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 37 37 H 0.97005 * 119.99841 * 0.02562 * 16 14 12 38 38 H 1.09001 * 110.48393 * 214.35096 * 19 17 16 39 39 H 1.08993 * 110.49374 * 336.99668 * 19 17 16 40 40 H 1.08999 * 110.75020 * 279.62036 * 20 19 17 41 41 H 1.09000 * 110.91210 * 156.32880 * 20 19 17 42 42 H 1.09001 * 109.47079 * 49.76958 * 23 21 20 43 43 H 1.08999 * 109.47564 * 169.77613 * 23 21 20 44 44 H 1.08001 * 119.99688 * 0.02562 * 25 24 23 45 45 H 1.08010 * 119.99860 * 180.25416 * 26 25 24 46 46 H 1.07999 * 119.99683 * 179.76295 * 27 26 25 47 47 H 1.08001 * 119.99475 * 179.97438 * 28 27 26 48 48 H 1.08006 * 119.99722 * 179.97438 * 29 28 27 49 49 H 1.09002 * 110.03215 * 359.97438 * 30 17 16 50 50 H 1.09000 * 110.03612 * 121.42262 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.4001 -6.0980 -0.0007 14 6 1.4393 -7.3923 0.0009 15 8 0.2259 -7.3922 0.0018 16 7 2.1132 -8.5595 0.0010 17 6 1.3807 -9.8283 0.0016 18 1 0.4557 -9.7247 0.5688 19 6 1.0685 -10.2588 -1.4464 20 6 2.2166 -11.2334 -1.8088 21 6 2.4389 -12.0069 -0.4855 22 1 1.6980 -12.7990 -0.3776 23 6 3.8543 -12.5854 -0.4346 24 6 3.9743 -13.7083 -1.4325 25 6 3.6855 -15.0053 -1.0515 26 6 3.7908 -16.0346 -1.9681 27 6 4.1946 -15.7684 -3.2631 28 6 4.4890 -14.4722 -3.6425 29 6 4.3786 -13.4422 -2.7273 30 6 2.2520 -10.9396 0.6126 31 1 -0.4850 0.8401 0.0004 32 1 0.6247 -2.5571 0.8897 33 1 0.6240 -2.5568 -0.8903 34 1 2.8719 -3.6044 -0.8906 35 1 2.8719 -3.6044 0.8894 36 1 0.5428 -4.9308 0.0000 37 1 3.0832 -8.5595 0.0007 38 1 0.1062 -10.7687 -1.4937 39 1 1.0768 -9.3954 -2.1115 40 1 3.1148 -10.6841 -2.0908 41 1 1.9140 -11.9116 -2.6066 42 1 4.5749 -11.8046 -0.6781 43 1 4.0555 -12.9661 0.5667 44 1 3.3735 -15.2138 -0.0387 45 1 3.5611 -17.0475 -1.6715 46 1 4.2805 -16.5732 -3.9781 47 1 4.8049 -14.2642 -4.6542 48 1 4.6089 -12.4294 -3.0237 49 1 3.2200 -10.5351 0.9082 50 1 1.7495 -11.3760 1.4758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261150869.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:36 Heat of formation + Delta-G solvation = -75.956227 kcal Electronic energy + Delta-G solvation = -28418.415243 eV Core-core repulsion = 24409.012143 eV Total energy + Delta-G solvation = -4009.403100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.65809 -39.87462 -38.82525 -37.76590 -35.28001 -34.43479 -32.89320 -32.49979 -31.26483 -29.82566 -29.57243 -28.57673 -25.90651 -25.14625 -23.55628 -22.94913 -21.76649 -21.13002 -20.60558 -20.49453 -19.83565 -18.19988 -17.28841 -16.85187 -16.43618 -16.10311 -15.72288 -15.63922 -15.40010 -15.32796 -14.80893 -14.53027 -14.26667 -14.19109 -13.78740 -13.73888 -13.57744 -13.39978 -13.05631 -12.91541 -12.55955 -12.31888 -12.15012 -11.93157 -11.71512 -11.48690 -11.42706 -11.28551 -11.21248 -11.11868 -11.04676 -10.92058 -10.83376 -10.68495 -10.38850 -9.79092 -9.44466 -9.31538 -9.27717 -9.18509 -9.03747 -8.69024 -8.41353 -6.09930 -4.13733 0.98547 1.03220 1.63026 2.56602 3.30659 3.34886 3.37584 3.40101 3.44123 3.89855 4.11801 4.18088 4.36327 4.40644 4.52657 4.57355 4.64654 4.76473 4.77406 4.91649 5.04303 5.08009 5.11762 5.14873 5.18261 5.25957 5.26831 5.28905 5.45977 5.49928 5.55178 5.66611 5.71989 5.73839 5.80359 5.89655 6.02909 6.10515 6.15424 6.18244 6.23888 6.26933 6.30194 6.60064 6.64238 6.69730 7.09139 7.47158 7.57925 7.68913 7.87160 7.95228 8.21781 8.34845 8.91584 9.51092 11.01467 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.001496 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.470862 B =18707.887541 C =19093.177190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.496 3.504 13 O -0.535 6.535 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.699 5.699 17 C 0.139 3.861 18 H 0.094 0.906 19 C -0.135 4.135 20 C -0.119 4.119 21 C -0.085 4.085 22 H 0.079 0.921 23 C -0.076 4.076 24 C -0.076 4.076 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.128 4.128 28 C -0.119 4.119 29 C -0.115 4.115 30 C -0.127 4.127 31 H 0.263 0.737 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.077 0.923 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -33.602 -3.003 34.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.276 3.724 13 O -0.413 6.413 14 C 0.289 3.711 15 O -0.395 6.395 16 N -0.353 5.353 17 C 0.034 3.966 18 H 0.112 0.888 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.103 4.103 22 H 0.098 0.902 23 C -0.113 4.113 24 C -0.076 4.076 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.137 4.137 29 C -0.133 4.133 30 C -0.165 4.165 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.096 0.904 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.862 -33.437 -2.988 34.078 hybrid contribution 0.382 0.884 -0.070 0.965 sum 6.244 -32.553 -3.058 33.287 Atomic orbital electron populations 1.69952 1.06092 1.27053 1.49944 1.24999 0.94896 0.99418 0.94907 0.86554 0.79495 0.82611 0.78753 1.21220 1.20105 1.20113 1.20977 0.93183 0.90265 1.51897 0.92224 1.19353 0.94187 0.90861 0.98242 1.21931 0.96271 0.80796 1.01303 1.46237 1.11782 1.05815 1.69866 1.20024 0.87732 0.85326 0.79359 1.90725 1.13257 1.87575 1.49719 1.20469 0.87783 0.85650 0.77229 1.90753 1.13443 1.87663 1.47669 1.45959 1.11147 1.04660 1.73515 1.21685 0.95904 0.82047 0.96945 0.88762 1.22790 0.98959 0.99662 0.95915 1.22608 0.98618 0.97474 0.96908 1.21981 0.96286 0.97041 0.95007 0.90231 1.20700 0.96949 0.95903 0.97787 1.19890 0.98411 0.94508 0.94815 1.21064 1.00623 0.92416 0.99643 1.21147 0.99825 0.99091 0.93710 1.21150 1.00166 0.96842 0.96411 1.21174 0.99926 0.93010 0.99569 1.21102 0.99867 0.99258 0.93053 1.22545 1.00483 0.95109 0.98399 0.92723 0.95668 0.95664 0.91888 0.91885 0.75400 0.75270 0.90548 0.90911 0.91264 0.91310 0.90603 0.90780 0.86193 0.86253 0.86318 0.86170 0.86047 0.90427 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.27 5.09 -27.89 -0.14 0.13 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.53 5.55 -60.73 -0.34 -12.86 16 12 C 0.50 8.50 7.89 -11.58 -0.09 8.41 16 13 O -0.53 -10.03 16.48 5.50 0.09 -9.94 16 14 C 0.51 7.48 7.89 -11.59 -0.09 7.39 16 15 O -0.52 -8.69 16.13 5.50 0.09 -8.60 16 16 N -0.70 -7.74 5.02 -53.16 -0.27 -8.01 16 17 C 0.14 1.24 3.25 -66.81 -0.22 1.03 16 18 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 19 C -0.13 -1.15 6.54 -25.07 -0.16 -1.31 16 20 C -0.12 -0.82 5.48 -24.74 -0.14 -0.95 16 21 C -0.08 -0.50 2.84 -88.97 -0.25 -0.75 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 C -0.08 -0.43 4.71 -27.88 -0.13 -0.56 16 24 C -0.08 -0.51 4.94 -104.62 -0.52 -1.03 16 25 C -0.12 -0.78 9.70 -39.58 -0.38 -1.16 16 26 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 27 C -0.13 -0.82 10.05 -39.58 -0.40 -1.22 16 28 C -0.12 -0.79 10.05 -39.59 -0.40 -1.19 16 29 C -0.11 -0.79 9.09 -39.59 -0.36 -1.15 16 30 C -0.13 -0.81 6.14 -25.62 -0.16 -0.97 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.41 7.17 7.94 -40.82 -0.32 6.84 16 37 H 0.41 4.12 7.79 -40.82 -0.32 3.80 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.75 8.04 -51.93 -0.42 0.34 16 40 H 0.07 0.49 7.97 -51.93 -0.41 0.07 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.42 7.96 -51.93 -0.41 0.01 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.54 8.06 -52.48 -0.42 0.12 16 46 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 48 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 49 H 0.08 0.47 7.31 -51.93 -0.38 0.09 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 415.35 15.07 6.26 6.26 Total: -1.00 -31.61 415.35 -10.84 -42.45 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.12 Total: 5.02 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -4.27 Total: -5.20 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.13 Total: -46.22 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.18 Total: -18.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.61 -10.84 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261150869.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.505 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds