Wall clock time and date at job start Wed Apr 1 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99988 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00250 * 3 2 1 6 6 H 1.48493 * 109.46720 * 150.00429 * 3 2 1 7 7 C 1.37871 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99614 * 179.97438 * 11 10 9 13 13 O 1.21355 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.49456 * 119.99994 * 180.02562 * 12 11 10 15 15 O 1.21341 * 119.99628 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99966 * 179.73002 * 14 12 11 17 17 C 1.46506 * 119.99968 * 180.02562 * 16 14 12 18 18 H 1.08998 * 110.01421 * 34.92837 * 17 16 14 19 19 C 1.53881 * 110.02864 * 273.54272 * 17 16 14 20 20 C 1.54257 * 106.59589 * 240.71479 * 19 17 16 21 21 C 1.54890 * 104.19987 * 23.61047 * 20 19 17 22 22 H 1.08999 * 110.75450 * 80.55768 * 21 20 19 23 23 C 1.52996 * 110.75726 * 203.74306 * 21 20 19 24 24 C 1.50702 * 109.47311 * 293.54596 * 23 21 20 25 25 C 1.38238 * 120.00077 * 269.72856 * 24 23 21 26 26 C 1.38240 * 120.00159 * 179.76104 * 25 24 23 27 27 C 1.38239 * 119.99631 * 0.48977 * 26 25 24 28 28 C 1.38234 * 120.00022 * 359.78822 * 27 26 25 29 29 C 1.38233 * 120.00151 * 89.99857 * 24 23 21 30 30 C 1.54261 * 110.03131 * 156.38014 * 17 16 14 31 31 H 0.97004 * 120.00315 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46564 * 59.99671 * 9 7 2 33 33 H 1.09006 * 109.46863 * 300.00334 * 9 7 2 34 34 H 1.09000 * 109.46986 * 59.99910 * 10 9 7 35 35 H 1.09002 * 109.46857 * 299.99776 * 10 9 7 36 36 H 0.96996 * 120.00499 * 0.02562 * 11 10 9 37 37 H 0.97004 * 120.00018 * 359.97438 * 16 14 12 38 38 H 1.09004 * 110.02997 * 359.97438 * 19 17 16 39 39 H 1.08998 * 110.02962 * 121.43054 * 19 17 16 40 40 H 1.09002 * 110.48735 * 142.29220 * 20 19 17 41 41 H 1.09006 * 110.48808 * 264.92724 * 20 19 17 42 42 H 1.09004 * 109.47261 * 53.54360 * 23 21 20 43 43 H 1.08995 * 109.47240 * 173.54675 * 23 21 20 44 44 H 1.08003 * 119.99840 * 359.97438 * 25 24 23 45 45 H 1.07995 * 120.00027 * 180.24897 * 26 25 24 46 46 H 1.07999 * 119.99770 * 179.76841 * 27 26 25 47 47 H 1.08001 * 119.99706 * 179.97438 * 28 27 26 48 48 H 1.07999 * 120.00068 * 0.02562 * 29 24 23 49 49 H 1.09006 * 110.48130 * 214.34875 * 30 17 16 50 50 H 1.08995 * 110.48865 * 336.98663 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4864 -2.6366 -0.0035 12 6 6.1602 -3.8038 -0.0041 13 8 5.5534 -4.8548 -0.0042 14 6 7.6548 -3.8039 -0.0047 15 8 8.2615 -2.7531 -0.0042 16 7 8.3286 -4.9711 0.0001 17 6 9.7937 -4.9712 0.0001 18 1 10.1668 -4.1291 0.5829 19 6 10.3206 -4.8879 -1.4433 20 6 11.1509 -6.1656 -1.6836 21 6 10.5915 -7.1810 -0.6563 22 1 9.6683 -7.6309 -1.0213 23 6 11.6295 -8.2594 -0.3395 24 6 11.8734 -9.0982 -1.5676 25 6 11.1133 -10.2305 -1.7933 26 6 11.3336 -10.9972 -2.9224 27 6 12.3209 -10.6371 -3.8205 28 6 13.0848 -9.5079 -3.5918 29 6 12.8608 -8.7383 -2.4655 30 6 10.3220 -6.2966 0.5863 31 1 -0.4851 0.8400 -0.0004 32 1 3.8751 -0.6805 0.8888 33 1 3.8745 -0.6800 -0.8912 34 1 3.6577 -3.1498 -0.8925 35 1 3.6585 -3.1510 0.8875 36 1 5.9714 -1.7966 -0.0030 37 1 7.8435 -5.8111 0.0044 38 1 9.4863 -4.8479 -2.1436 39 1 10.9502 -4.0059 -1.5605 40 1 11.0035 -6.5308 -2.7000 41 1 12.2075 -5.9751 -1.4952 42 1 12.5622 -7.7868 -0.0314 43 1 11.2601 -8.8937 0.4662 44 1 10.3449 -10.5143 -1.0894 45 1 10.7371 -11.8796 -3.1007 46 1 12.4955 -11.2381 -4.7006 47 1 13.8564 -9.2268 -4.2933 48 1 13.4579 -7.8563 -2.2867 49 1 11.2448 -6.1272 1.1413 50 1 9.5698 -6.7573 1.2266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261150871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:43 Heat of formation + Delta-G solvation = -71.953401 kcal Electronic energy + Delta-G solvation = -28498.092390 eV Core-core repulsion = 24488.862866 eV Total energy + Delta-G solvation = -4009.229524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71781 -39.90330 -38.87688 -37.82378 -35.40048 -34.49620 -32.85993 -32.54590 -31.26950 -30.28987 -29.62712 -28.59494 -26.06782 -25.28226 -23.47819 -22.97393 -21.78894 -20.91084 -20.57210 -20.33798 -20.24710 -18.27455 -17.19560 -17.08124 -16.74805 -16.11155 -15.80918 -15.64764 -15.47948 -15.32112 -14.76421 -14.65550 -14.29708 -14.17510 -13.88070 -13.76809 -13.64405 -13.41335 -13.13527 -13.06367 -12.61933 -12.55942 -12.24849 -11.94069 -11.74775 -11.57975 -11.49064 -11.44723 -11.30881 -11.24964 -11.07185 -10.95771 -10.85949 -10.44582 -10.30436 -9.96301 -9.46038 -9.37684 -9.29829 -9.28869 -9.04387 -8.77387 -8.61556 -6.12675 -4.13430 0.98074 1.02800 1.55337 2.48958 3.26333 3.34331 3.35775 3.36282 3.40050 3.81471 4.06332 4.13843 4.32983 4.37480 4.51854 4.55668 4.64041 4.67554 4.76225 4.88115 5.01691 5.05712 5.08457 5.16086 5.16595 5.20463 5.21058 5.31717 5.34567 5.47169 5.50304 5.65906 5.67529 5.71310 5.79246 5.87257 5.96741 6.00207 6.09818 6.10096 6.15153 6.22839 6.26434 6.46927 6.51397 6.63673 6.96286 7.11119 7.18199 7.57956 7.62297 7.87202 8.21672 8.41475 8.90498 9.47297 11.00052 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.001599 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.874370 B =17507.723283 C =17950.021265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.691 5.691 12 C 0.497 3.503 13 O -0.530 6.530 14 C 0.509 3.491 15 O -0.522 6.522 16 N -0.699 5.699 17 C 0.139 3.861 18 H 0.094 0.906 19 C -0.136 4.136 20 C -0.116 4.116 21 C -0.088 4.088 22 H 0.080 0.920 23 C -0.074 4.074 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.120 4.120 29 C -0.116 4.116 30 C -0.127 4.127 31 H 0.265 0.735 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.412 0.588 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.084 0.916 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.417 -19.811 -3.204 36.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.342 5.342 12 C 0.277 3.723 13 O -0.407 6.407 14 C 0.289 3.711 15 O -0.397 6.397 16 N -0.353 5.353 17 C 0.035 3.965 18 H 0.112 0.888 19 C -0.175 4.175 20 C -0.154 4.154 21 C -0.107 4.107 22 H 0.099 0.901 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.136 4.136 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.138 4.138 29 C -0.134 4.134 30 C -0.165 4.165 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.103 0.897 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 30.226 -19.658 -3.193 36.197 hybrid contribution 0.273 0.914 -0.154 0.967 sum 30.499 -18.744 -3.348 35.954 Atomic orbital electron populations 1.69900 1.06280 1.27114 1.50233 1.24981 0.94767 0.99157 0.94250 0.86767 0.80340 0.83497 0.78617 1.20161 1.21213 1.18963 1.20879 0.88442 0.94958 1.51993 0.90542 1.19828 0.98108 0.90990 0.97234 1.21711 0.74767 1.00826 1.02157 1.46209 1.09505 1.08051 1.70444 1.20013 0.87799 0.85220 0.79280 1.90745 1.69711 1.31017 1.49245 1.20435 0.88942 0.84437 0.77237 1.90743 1.70038 1.31073 1.47829 1.45941 1.07040 1.08907 1.73371 1.21693 0.78754 0.99121 0.96963 0.88795 1.22619 1.00255 0.98477 0.96133 1.22433 0.99321 0.94292 0.99304 1.22158 0.98539 0.94574 0.95395 0.90117 1.20625 0.99501 0.96225 0.94759 1.19879 0.95786 0.95416 0.96642 1.21089 0.99585 0.95082 0.97871 1.21168 0.98038 0.99799 0.94632 1.21156 0.96431 0.97423 0.99514 1.21160 0.99654 0.95373 0.97583 1.21064 0.98101 0.99667 0.94553 1.22745 1.01969 0.94186 0.97583 0.92507 0.95709 0.96159 0.91281 0.91244 0.75584 0.75188 0.91045 0.90851 0.91397 0.91359 0.90735 0.90746 0.86104 0.86166 0.86297 0.86229 0.86168 0.89716 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.87 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.55 5.61 -4.04 -0.02 2.53 16 11 N -0.69 -11.92 5.55 -60.73 -0.34 -12.25 16 12 C 0.50 8.20 7.89 -11.58 -0.09 8.11 16 13 O -0.53 -9.72 16.48 5.49 0.09 -9.63 16 14 C 0.51 7.20 7.88 -11.58 -0.09 7.11 16 15 O -0.52 -8.31 16.15 5.50 0.09 -8.22 16 16 N -0.70 -7.48 4.94 -53.15 -0.26 -7.75 16 17 C 0.14 1.19 3.23 -66.81 -0.22 0.97 16 18 H 0.09 0.90 7.60 -51.93 -0.39 0.51 16 19 C -0.14 -1.12 6.59 -25.61 -0.17 -1.29 16 20 C -0.12 -0.74 5.24 -25.08 -0.13 -0.87 16 21 C -0.09 -0.51 2.92 -88.63 -0.26 -0.77 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 C -0.07 -0.38 4.87 -27.88 -0.14 -0.52 16 24 C -0.08 -0.50 4.89 -104.62 -0.51 -1.01 16 25 C -0.12 -0.80 9.70 -39.58 -0.38 -1.19 16 26 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 27 C -0.13 -0.83 10.05 -39.58 -0.40 -1.23 16 28 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 29 C -0.12 -0.75 8.97 -39.58 -0.35 -1.10 16 30 C -0.13 -0.75 5.88 -25.08 -0.15 -0.90 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 33 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.41 6.55 7.94 -40.82 -0.32 6.22 16 37 H 0.41 4.03 8.03 -40.82 -0.33 3.71 16 38 H 0.07 0.70 7.92 -51.93 -0.41 0.29 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.07 0.37 7.99 -51.93 -0.41 -0.04 16 42 H 0.07 0.33 8.04 -51.93 -0.42 -0.08 16 43 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 44 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 48 H 0.12 0.61 8.03 -52.49 -0.42 0.19 16 49 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16 50 H 0.08 0.45 7.97 -51.93 -0.41 0.04 16 LS Contribution 412.04 15.07 6.21 6.21 Total: -1.00 -32.37 412.04 -10.48 -42.85 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.12 Total: 4.85 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.25 Total: -6.17 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.17 Total: -46.39 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.37 -10.48 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261150871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.100 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds