Wall clock time and date at job start Wed Apr 1 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00011 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99988 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00250 * 3 2 1 6 6 H 1.48493 * 109.46720 * 150.00429 * 3 2 1 7 7 C 1.37871 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99614 * 179.97438 * 11 10 9 13 13 O 1.21355 * 120.00214 * 0.02562 * 12 11 10 14 14 C 1.49456 * 119.99994 * 180.02562 * 12 11 10 15 15 O 1.21341 * 119.99628 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99966 * 179.73002 * 14 12 11 17 17 C 1.46506 * 119.99968 * 180.02562 * 16 14 12 18 18 H 1.08998 * 110.01421 * 34.92837 * 17 16 14 19 19 C 1.53881 * 110.02864 * 273.54272 * 17 16 14 20 20 C 1.54257 * 106.59589 * 240.71479 * 19 17 16 21 21 C 1.54890 * 104.19987 * 23.61047 * 20 19 17 22 22 H 1.08999 * 110.75450 * 80.55768 * 21 20 19 23 23 C 1.52996 * 110.75726 * 203.74306 * 21 20 19 24 24 C 1.50702 * 109.47311 * 293.54596 * 23 21 20 25 25 C 1.38238 * 120.00077 * 269.72856 * 24 23 21 26 26 C 1.38240 * 120.00159 * 179.76104 * 25 24 23 27 27 C 1.38239 * 119.99631 * 0.48977 * 26 25 24 28 28 C 1.38234 * 120.00022 * 359.78822 * 27 26 25 29 29 C 1.38233 * 120.00151 * 89.99857 * 24 23 21 30 30 C 1.54261 * 110.03131 * 156.38014 * 17 16 14 31 31 H 0.97004 * 120.00315 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46564 * 59.99671 * 9 7 2 33 33 H 1.09006 * 109.46863 * 300.00334 * 9 7 2 34 34 H 1.09000 * 109.46986 * 59.99910 * 10 9 7 35 35 H 1.09002 * 109.46857 * 299.99776 * 10 9 7 36 36 H 0.96996 * 120.00499 * 0.02562 * 11 10 9 37 37 H 0.97004 * 120.00018 * 359.97438 * 16 14 12 38 38 H 1.09004 * 110.02997 * 359.97438 * 19 17 16 39 39 H 1.08998 * 110.02962 * 121.43054 * 19 17 16 40 40 H 1.09002 * 110.48735 * 142.29220 * 20 19 17 41 41 H 1.09006 * 110.48808 * 264.92724 * 20 19 17 42 42 H 1.09004 * 109.47261 * 53.54360 * 23 21 20 43 43 H 1.08995 * 109.47240 * 173.54675 * 23 21 20 44 44 H 1.08003 * 119.99840 * 359.97438 * 25 24 23 45 45 H 1.07995 * 120.00027 * 180.24897 * 26 25 24 46 46 H 1.07999 * 119.99770 * 179.76841 * 27 26 25 47 47 H 1.08001 * 119.99706 * 179.97438 * 28 27 26 48 48 H 1.07999 * 120.00068 * 0.02562 * 29 24 23 49 49 H 1.09006 * 110.48130 * 214.34875 * 30 17 16 50 50 H 1.08995 * 110.48865 * 336.98663 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4864 -2.6366 -0.0035 12 6 6.1602 -3.8038 -0.0041 13 8 5.5534 -4.8548 -0.0042 14 6 7.6548 -3.8039 -0.0047 15 8 8.2615 -2.7531 -0.0042 16 7 8.3286 -4.9711 0.0001 17 6 9.7937 -4.9712 0.0001 18 1 10.1668 -4.1291 0.5829 19 6 10.3206 -4.8879 -1.4433 20 6 11.1509 -6.1656 -1.6836 21 6 10.5915 -7.1810 -0.6563 22 1 9.6683 -7.6309 -1.0213 23 6 11.6295 -8.2594 -0.3395 24 6 11.8734 -9.0982 -1.5676 25 6 11.1133 -10.2305 -1.7933 26 6 11.3336 -10.9972 -2.9224 27 6 12.3209 -10.6371 -3.8205 28 6 13.0848 -9.5079 -3.5918 29 6 12.8608 -8.7383 -2.4655 30 6 10.3220 -6.2966 0.5863 31 1 -0.4851 0.8400 -0.0004 32 1 3.8751 -0.6805 0.8888 33 1 3.8745 -0.6800 -0.8912 34 1 3.6577 -3.1498 -0.8925 35 1 3.6585 -3.1510 0.8875 36 1 5.9714 -1.7966 -0.0030 37 1 7.8435 -5.8111 0.0044 38 1 9.4863 -4.8479 -2.1436 39 1 10.9502 -4.0059 -1.5605 40 1 11.0035 -6.5308 -2.7000 41 1 12.2075 -5.9751 -1.4952 42 1 12.5622 -7.7868 -0.0314 43 1 11.2601 -8.8937 0.4662 44 1 10.3449 -10.5143 -1.0894 45 1 10.7371 -11.8796 -3.1007 46 1 12.4955 -11.2381 -4.7006 47 1 13.8564 -9.2268 -4.2933 48 1 13.4579 -7.8563 -2.2867 49 1 11.2448 -6.1272 1.1413 50 1 9.5698 -6.7573 1.2266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261150871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:42 Heat of formation + Delta-G solvation = -91.714407 kcal Electronic energy + Delta-G solvation = -28498.949291 eV Core-core repulsion = 24488.862866 eV Total energy + Delta-G solvation = -4010.086426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81808 -40.52540 -39.82673 -38.73098 -36.91390 -35.41406 -34.76339 -33.23887 -32.13109 -31.71384 -30.15372 -29.29401 -27.53320 -26.05770 -24.82173 -23.43370 -22.69226 -22.26222 -21.61646 -21.20090 -20.79374 -19.51313 -19.02883 -18.00460 -17.57428 -17.11594 -16.95909 -16.40666 -16.26022 -16.17761 -15.98258 -15.86811 -15.58875 -15.29355 -14.94616 -14.61858 -14.57851 -14.35700 -14.19892 -13.91248 -13.56433 -13.40397 -13.09791 -13.05386 -12.98578 -12.77221 -12.42145 -12.27576 -12.23190 -12.20114 -11.90815 -11.88008 -11.79075 -11.59633 -11.51966 -11.43915 -11.35237 -10.79753 -10.69896 -10.31812 -10.22635 -9.75510 -9.50291 -8.30886 -6.37811 0.31883 0.52037 0.56302 1.32672 1.39108 1.40642 1.51889 2.11655 2.35719 2.66246 2.93336 3.04320 3.41214 3.54076 3.58636 3.86365 4.04981 4.07912 4.22054 4.25313 4.34386 4.37533 4.37643 4.45355 4.50257 4.60267 4.64685 4.66030 4.71085 4.72739 4.78922 4.84813 4.97839 5.01660 5.06110 5.07026 5.15569 5.22977 5.28038 5.28701 5.31210 5.35900 5.43378 5.51827 5.58050 5.64657 5.69540 5.81225 5.93767 6.19815 6.20195 6.36083 6.67748 6.74947 6.93150 7.26882 8.85333 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.001599 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.874370 B =17507.723283 C =17950.021265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.537 4.537 8 H 0.036 0.964 9 C -0.017 4.017 10 C 0.142 3.858 11 N -0.688 5.688 12 C 0.498 3.502 13 O -0.550 6.550 14 C 0.515 3.485 15 O -0.540 6.540 16 N -0.682 5.682 17 C 0.134 3.866 18 H 0.088 0.912 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.082 4.082 22 H 0.070 0.930 23 C -0.068 4.068 24 C -0.085 4.085 25 C -0.133 4.133 26 C -0.132 4.132 27 C -0.140 4.140 28 C -0.131 4.131 29 C -0.125 4.125 30 C -0.118 4.118 31 H 0.268 0.732 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.417 0.583 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.104 0.896 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.514 -19.489 -2.842 38.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.279 3.721 13 O -0.429 6.429 14 C 0.295 3.705 15 O -0.417 6.417 16 N -0.335 5.335 17 C 0.031 3.969 18 H 0.106 0.894 19 C -0.174 4.174 20 C -0.146 4.146 21 C -0.101 4.101 22 H 0.089 0.911 23 C -0.105 4.105 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.149 4.149 29 C -0.143 4.143 30 C -0.155 4.155 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.254 0.746 37 H 0.255 0.745 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.123 0.877 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 33.368 -19.381 -2.832 38.692 hybrid contribution -0.717 0.675 -0.301 1.029 sum 32.651 -18.706 -3.134 37.760 Atomic orbital electron populations 1.70056 1.08376 1.28384 1.51856 1.25982 0.95630 1.03547 0.93739 0.85627 0.79640 0.77908 0.79290 1.19122 1.21071 1.16452 1.21202 0.91186 0.93590 1.51573 0.94596 1.19695 0.94784 0.92875 0.98138 1.21278 0.76607 0.98961 1.01283 1.45988 1.08219 1.08963 1.70854 1.20447 0.89030 0.84454 0.78167 1.90736 1.70516 1.31674 1.49940 1.19921 0.87538 0.85187 0.77821 1.90742 1.69807 1.31787 1.49366 1.45990 1.08120 1.08027 1.71334 1.21932 0.76992 1.00580 0.97397 0.89401 1.22586 0.99868 0.99580 0.95344 1.22387 0.99846 0.93309 0.99078 1.22079 0.98365 0.94561 0.95059 0.91133 1.20603 0.99746 0.95856 0.94339 1.20074 0.95717 0.95508 0.97175 1.21316 1.00072 0.95498 0.98227 1.21412 0.98412 1.00364 0.94848 1.21413 0.96521 0.97840 1.00059 1.21435 1.00028 0.95405 0.98038 1.21298 0.98287 1.00142 0.94533 1.22734 1.02813 0.92387 0.97606 0.92301 0.94584 0.94797 0.92322 0.92215 0.74585 0.74531 0.92900 0.90884 0.92202 0.89839 0.89520 0.90031 0.85367 0.85182 0.85087 0.84880 0.84873 0.87747 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 2 C 0.01 0.50 5.47 84.65 0.46 0.96 16 3 Si 0.95 42.85 27.47 68.60 1.88 44.73 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 7 C -0.54 -30.36 9.66 25.60 0.25 -30.11 16 8 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 9 C -0.02 -0.77 4.16 29.85 0.12 -0.64 16 10 C 0.14 5.66 5.61 86.38 0.48 6.14 16 11 N -0.69 -23.02 5.55 -464.41 -2.58 -25.59 16 12 C 0.50 16.00 7.89 87.27 0.69 16.69 16 13 O -0.55 -19.94 16.48 -3.26 -0.05 -19.99 16 14 C 0.52 13.94 7.88 87.27 0.69 14.63 16 15 O -0.54 -16.42 16.15 -3.22 -0.05 -16.47 16 16 N -0.68 -13.63 4.94 -440.43 -2.17 -15.80 16 17 C 0.13 2.04 3.23 45.71 0.15 2.19 16 18 H 0.09 1.51 7.60 -2.39 -0.02 1.50 16 19 C -0.14 -2.03 6.59 31.32 0.21 -1.83 16 20 C -0.11 -1.17 5.24 31.67 0.17 -1.00 16 21 C -0.08 -0.77 2.92 -9.51 -0.03 -0.80 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 C -0.07 -0.53 4.87 29.85 0.15 -0.39 16 24 C -0.08 -0.97 4.89 -19.87 -0.10 -1.07 16 25 C -0.13 -1.68 9.70 22.27 0.22 -1.46 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 27 C -0.14 -1.72 10.05 22.27 0.22 -1.50 16 28 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 29 C -0.12 -1.40 8.97 22.27 0.20 -1.20 16 30 C -0.12 -1.07 5.88 31.66 0.19 -0.88 16 31 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.04 1.54 7.20 -2.39 -0.02 1.53 16 33 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.42 12.64 7.94 -92.71 -0.74 11.90 16 37 H 0.42 7.58 8.03 -92.71 -0.74 6.84 16 38 H 0.05 1.00 7.92 -2.39 -0.02 0.98 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 41 H 0.08 0.67 7.99 -2.38 -0.02 0.65 16 42 H 0.09 0.49 8.04 -2.38 -0.02 0.47 16 43 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 44 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.13 1.08 8.06 -2.91 -0.02 1.06 16 48 H 0.13 1.06 8.03 -2.91 -0.02 1.03 16 49 H 0.10 0.62 8.05 -2.38 -0.02 0.60 16 50 H 0.08 0.72 7.97 -2.39 -0.02 0.71 16 Total: -1.00 -70.46 412.04 1.24 -69.21 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.59 Total: 25.28 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.51 Total: -3.03 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.45 Total: -99.72 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.11 Total: -36.46 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.88 Total: 44.73 kcal Total: -70.46 1.24 -69.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261150871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.500 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds