Wall clock time and date at job start Wed Apr 1 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47049 * 239.99579 * 3 2 1 5 5 H 1.48495 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46924 * 120.00089 * 3 2 1 7 7 C 1.38818 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90816 * 23.74240 * 10 9 7 12 12 C 1.53784 * 113.61491 * 154.99680 * 10 9 7 13 13 C 1.53787 * 87.07923 * 139.97939 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 C 1.53001 * 113.61313 * 219.93272 * 13 12 10 16 16 N 1.46498 * 109.46735 * 185.00228 * 15 13 12 17 17 C 1.34778 * 119.99710 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00252 * 179.97438 * 17 16 15 20 20 C 1.50694 * 109.87261 * 275.44815 * 19 17 16 21 21 C 1.38229 * 120.00276 * 269.02228 * 20 19 17 22 22 C 1.38239 * 120.00102 * 179.78587 * 21 20 19 23 23 C 1.38230 * 119.99813 * 0.46796 * 22 21 20 24 24 C 1.38237 * 120.00195 * 359.76277 * 23 22 21 25 25 C 1.38229 * 119.99671 * 0.02563 * 24 23 22 26 26 C 1.54102 * 109.88063 * 154.28293 * 19 17 16 27 27 C 1.54807 * 104.19114 * 242.60970 * 26 19 17 28 28 C 1.55000 * 102.09276 * 20.88134 * 27 26 19 29 29 O 1.43748 * 109.87608 * 36.45660 * 19 17 16 30 30 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 31 31 H 0.97002 * 119.99808 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61451 * 25.43425 * 12 10 9 34 34 H 1.08994 * 113.61477 * 254.52726 * 12 10 9 35 35 H 1.08997 * 109.47307 * 305.00415 * 15 13 12 36 36 H 1.09003 * 109.47172 * 65.00320 * 15 13 12 37 37 H 0.96995 * 120.00713 * 359.97438 * 16 15 13 38 38 H 1.08001 * 119.99911 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.99891 * 180.25755 * 22 21 20 40 40 H 1.07998 * 119.99807 * 179.79338 * 23 22 21 41 41 H 1.08000 * 119.99581 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.99604 * 179.97438 * 25 24 23 43 43 H 1.09005 * 110.48596 * 1.28480 * 26 19 17 44 44 H 1.09000 * 110.48345 * 123.92802 * 26 19 17 45 45 H 1.08997 * 110.90716 * 262.68267 * 27 26 19 46 46 H 1.09000 * 110.94189 * 139.09252 * 27 26 19 47 47 H 1.09000 * 110.61785 * 204.47587 * 28 27 26 48 48 H 1.08997 * 110.61693 * 81.47344 * 28 27 26 49 49 H 1.08999 * 113.61111 * 139.98327 * 30 13 12 50 50 H 1.08999 * 113.61280 * 270.79710 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2601 -4.8288 0.5961 13 6 1.8479 -5.6976 -0.5285 14 1 2.7984 -6.1635 -0.2688 15 6 0.8453 -6.6867 -1.1265 16 7 1.5266 -7.5444 -2.0992 17 6 0.8367 -8.4973 -2.7569 18 8 -0.3482 -8.6444 -2.5438 19 6 1.5373 -9.3794 -3.7580 20 6 1.5913 -8.6913 -5.0976 21 6 0.5777 -8.8875 -6.0168 22 6 0.6250 -8.2528 -7.2439 23 6 1.6908 -7.4296 -7.5556 24 6 2.7069 -7.2372 -6.6383 25 6 2.6573 -7.8684 -5.4095 26 6 0.7924 -10.7224 -3.8848 27 6 1.8231 -11.7746 -3.4082 28 6 2.8031 -10.9133 -2.5714 29 8 2.8697 -9.6711 -3.3043 30 6 1.9990 -4.4022 -1.3432 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 0.1798 -4.7002 0.5292 34 1 1.5917 -5.1212 1.5924 35 1 0.4239 -7.3021 -0.3317 36 1 0.0456 -6.1375 -1.6236 37 1 2.4739 -7.4262 -2.2705 38 1 -0.2532 -9.5336 -5.7747 39 1 -0.1691 -8.4028 -7.9604 40 1 1.7295 -6.9364 -8.5156 41 1 3.5394 -6.5937 -6.8817 42 1 3.4514 -7.7184 -4.6930 43 1 -0.0881 -10.7325 -3.2422 44 1 0.5112 -10.9062 -4.9218 45 1 2.3333 -12.2312 -4.2562 46 1 1.3463 -12.5341 -2.7886 47 1 3.7847 -11.3847 -2.5249 48 1 2.4081 -10.7469 -1.5692 49 1 2.9270 -4.3502 -1.9125 50 1 1.1212 -4.1578 -1.9414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263849580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:41 Heat of formation + Delta-G solvation = -22.454867 kcal Electronic energy + Delta-G solvation = -30156.738491 eV Core-core repulsion = 26149.655385 eV Total energy + Delta-G solvation = -4007.083107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.27416 -39.15760 -38.67341 -38.08752 -34.77310 -33.31177 -32.91251 -32.23495 -31.01151 -30.26279 -28.60313 -27.28023 -25.07248 -24.45458 -23.68680 -23.20063 -22.27318 -21.43734 -20.99593 -20.04459 -19.03490 -17.89383 -17.65491 -17.02075 -16.72071 -16.01099 -15.84768 -15.17615 -15.14448 -14.94412 -14.87198 -14.58542 -14.15486 -14.02906 -13.59122 -13.56897 -13.49907 -13.17078 -12.94524 -12.80431 -12.34984 -12.15008 -11.90302 -11.80887 -11.62886 -11.52487 -11.38215 -11.22301 -11.16142 -11.09593 -10.90141 -10.80190 -10.50281 -10.20106 -10.12664 -9.81168 -9.73672 -9.47329 -9.12316 -9.02382 -8.92528 -8.84672 -6.95294 -5.77142 -3.05948 1.02202 1.19553 2.47377 3.04660 3.26346 3.43809 3.48149 3.49354 3.58094 4.12247 4.28518 4.47760 4.57627 4.59233 4.72224 4.76146 4.79738 4.88981 4.98674 5.00906 5.03028 5.23468 5.25473 5.27528 5.30866 5.37532 5.43765 5.47746 5.53287 5.56624 5.67099 5.72648 5.80815 5.82943 5.85679 5.94705 6.10290 6.14262 6.23255 6.27466 6.30417 6.32749 6.37660 6.41940 6.50785 6.61790 6.74389 6.84681 7.13084 7.46497 7.69428 8.11300 8.41461 9.52320 10.10824 10.45100 11.45239 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.002426 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.740068 B =11539.870741 C =12714.385159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.130 3.870 16 N -0.709 5.709 17 C 0.508 3.492 18 O -0.536 6.536 19 C 0.135 3.865 20 C -0.084 4.084 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.143 4.143 27 C -0.153 4.153 28 C 0.043 3.957 29 O -0.355 6.355 30 C -0.160 4.160 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -26.202 -11.523 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.007 3.993 16 N -0.359 5.359 17 C 0.292 3.708 18 O -0.414 6.414 19 C 0.092 3.908 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.106 4.106 26 C -0.180 4.180 27 C -0.191 4.191 28 C -0.033 4.033 29 O -0.274 6.274 30 C -0.201 4.201 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.240 0.760 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.956 -25.955 -11.359 28.762 hybrid contribution 0.432 0.908 -0.089 1.010 sum 5.388 -25.047 -11.448 28.061 Atomic orbital electron populations 1.69653 1.05140 1.25852 1.57420 1.24770 0.95520 0.97778 1.02859 0.86263 0.78533 0.83523 0.77846 1.21254 1.21683 1.21234 1.19260 0.91029 0.84264 1.42993 0.91161 1.42406 1.05759 0.99878 1.87005 1.21514 0.95289 0.85026 0.92758 0.90668 1.23449 1.01020 0.97043 0.96665 1.22638 0.98365 0.94399 0.99226 0.89362 1.21485 0.95395 0.91587 0.90796 1.45975 1.13634 1.34369 1.41931 1.20667 0.87421 0.81353 0.81326 1.90698 1.15156 1.70447 1.65088 1.20934 0.83988 0.94983 0.90928 1.19326 0.96572 0.99328 0.93273 1.21057 0.98067 0.99742 0.93367 1.21116 0.98560 0.97554 0.96721 1.21242 0.94232 0.98084 0.99573 1.21195 0.99141 0.99653 0.93851 1.20990 0.97472 0.95187 0.96994 1.23107 0.99582 0.90922 1.04421 1.23149 0.96963 0.98326 1.00612 1.23669 1.00836 0.83722 0.95101 1.88907 1.25349 1.41211 1.71942 1.23939 1.01369 0.94881 0.99923 0.93401 0.78066 0.90132 0.92004 0.91750 0.91178 0.76036 0.85445 0.85736 0.85888 0.85639 0.85367 0.88338 0.89063 0.90166 0.89739 0.88189 0.91785 0.92779 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.81 9.97 -15.06 -0.15 -6.96 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -17.97 5.40 -52.63 -0.28 -18.26 16 10 C 0.17 3.26 4.48 -67.12 -0.30 2.96 16 11 H 0.08 1.46 8.10 -51.93 -0.42 1.03 16 12 C -0.14 -2.30 7.39 -25.91 -0.19 -2.49 16 13 C -0.13 -1.76 3.75 -89.81 -0.34 -2.10 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 15 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 16 N -0.71 -8.94 5.47 -60.29 -0.33 -9.27 16 17 C 0.51 6.87 6.65 -10.98 -0.07 6.80 16 18 O -0.54 -8.90 15.58 5.55 0.09 -8.81 16 19 C 0.13 1.46 0.91 -92.35 -0.08 1.37 16 20 C -0.08 -0.94 4.84 -104.63 -0.51 -1.44 16 21 C -0.10 -1.08 8.74 -39.58 -0.35 -1.42 16 22 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 23 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 25 C -0.09 -0.94 9.36 -39.58 -0.37 -1.31 16 26 C -0.14 -1.29 5.64 -25.20 -0.14 -1.43 16 27 C -0.15 -1.03 7.15 -24.72 -0.18 -1.21 16 28 C 0.04 0.32 7.66 38.21 0.29 0.62 16 29 O -0.36 -3.52 9.30 -35.23 -0.33 -3.84 16 30 C -0.16 -2.72 7.43 -25.92 -0.19 -2.91 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.39 10.36 7.92 -40.82 -0.32 10.03 16 33 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 37 H 0.40 4.51 7.97 -40.82 -0.33 4.18 16 38 H 0.13 1.16 6.44 -52.49 -0.34 0.83 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.13 1.28 7.55 -52.48 -0.40 0.88 16 43 H 0.10 1.02 6.74 -51.93 -0.35 0.67 16 44 H 0.09 0.73 5.78 -51.93 -0.30 0.43 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -32.91 404.59 -10.83 -43.74 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -7.89 Total: 13.36 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.89 Total: -12.77 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.11 Total: -55.21 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.24 Total: -12.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.91 -10.83 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263849580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.289 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds