Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48497 * 109.47049 * 239.99579 * 3 2 1 5 5 H 1.48495 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46924 * 120.00089 * 3 2 1 7 7 C 1.38818 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00026 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90816 * 23.74240 * 10 9 7 12 12 C 1.53784 * 113.61491 * 154.99680 * 10 9 7 13 13 C 1.53787 * 87.07923 * 139.97939 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 C 1.53001 * 113.61313 * 219.93272 * 13 12 10 16 16 N 1.46498 * 109.46735 * 185.00228 * 15 13 12 17 17 C 1.34778 * 119.99710 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00002 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00252 * 179.97438 * 17 16 15 20 20 C 1.50694 * 109.87261 * 275.44815 * 19 17 16 21 21 C 1.38229 * 120.00276 * 269.02228 * 20 19 17 22 22 C 1.38239 * 120.00102 * 179.78587 * 21 20 19 23 23 C 1.38230 * 119.99813 * 0.46796 * 22 21 20 24 24 C 1.38237 * 120.00195 * 359.76277 * 23 22 21 25 25 C 1.38229 * 119.99671 * 0.02563 * 24 23 22 26 26 C 1.54102 * 109.88063 * 154.28293 * 19 17 16 27 27 C 1.54807 * 104.19114 * 242.60970 * 26 19 17 28 28 C 1.55000 * 102.09276 * 20.88134 * 27 26 19 29 29 O 1.43748 * 109.87608 * 36.45660 * 19 17 16 30 30 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 31 31 H 0.97002 * 119.99808 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.61451 * 25.43425 * 12 10 9 34 34 H 1.08994 * 113.61477 * 254.52726 * 12 10 9 35 35 H 1.08997 * 109.47307 * 305.00415 * 15 13 12 36 36 H 1.09003 * 109.47172 * 65.00320 * 15 13 12 37 37 H 0.96995 * 120.00713 * 359.97438 * 16 15 13 38 38 H 1.08001 * 119.99911 * 0.02562 * 21 20 19 39 39 H 1.08004 * 119.99891 * 180.25755 * 22 21 20 40 40 H 1.07998 * 119.99807 * 179.79338 * 23 22 21 41 41 H 1.08000 * 119.99581 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.99604 * 179.97438 * 25 24 23 43 43 H 1.09005 * 110.48596 * 1.28480 * 26 19 17 44 44 H 1.09000 * 110.48345 * 123.92802 * 26 19 17 45 45 H 1.08997 * 110.90716 * 262.68267 * 27 26 19 46 46 H 1.09000 * 110.94189 * 139.09252 * 27 26 19 47 47 H 1.09000 * 110.61785 * 204.47587 * 28 27 26 48 48 H 1.08997 * 110.61693 * 81.47344 * 28 27 26 49 49 H 1.08999 * 113.61111 * 139.98327 * 30 13 12 50 50 H 1.08999 * 113.61280 * 270.79710 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0661 -3.5647 0.4048 12 6 1.2601 -4.8288 0.5961 13 6 1.8479 -5.6976 -0.5285 14 1 2.7984 -6.1635 -0.2688 15 6 0.8453 -6.6867 -1.1265 16 7 1.5266 -7.5444 -2.0992 17 6 0.8367 -8.4973 -2.7569 18 8 -0.3482 -8.6444 -2.5438 19 6 1.5373 -9.3794 -3.7580 20 6 1.5913 -8.6913 -5.0976 21 6 0.5777 -8.8875 -6.0168 22 6 0.6250 -8.2528 -7.2439 23 6 1.6908 -7.4296 -7.5556 24 6 2.7069 -7.2372 -6.6383 25 6 2.6573 -7.8684 -5.4095 26 6 0.7924 -10.7224 -3.8848 27 6 1.8231 -11.7746 -3.4082 28 6 2.8031 -10.9133 -2.5714 29 8 2.8697 -9.6711 -3.3043 30 6 1.9990 -4.4022 -1.3432 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 0.1798 -4.7002 0.5292 34 1 1.5917 -5.1212 1.5924 35 1 0.4239 -7.3021 -0.3317 36 1 0.0456 -6.1375 -1.6236 37 1 2.4739 -7.4262 -2.2705 38 1 -0.2532 -9.5336 -5.7747 39 1 -0.1691 -8.4028 -7.9604 40 1 1.7295 -6.9364 -8.5156 41 1 3.5394 -6.5937 -6.8817 42 1 3.4514 -7.7184 -4.6930 43 1 -0.0881 -10.7325 -3.2422 44 1 0.5112 -10.9062 -4.9218 45 1 2.3333 -12.2312 -4.2562 46 1 1.3463 -12.5341 -2.7886 47 1 3.7847 -11.3847 -2.5249 48 1 2.4081 -10.7469 -1.5692 49 1 2.9270 -4.3502 -1.9125 50 1 1.1212 -4.1578 -1.9414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263849580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = -42.796164 kcal Electronic energy + Delta-G solvation = -30157.620556 eV Core-core repulsion = 26149.655385 eV Total energy + Delta-G solvation = -4007.965171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.12141 -40.31489 -39.60758 -39.10160 -36.14446 -35.07125 -33.66119 -32.96494 -32.14837 -31.72492 -29.52289 -28.43923 -26.48141 -25.96812 -24.91565 -23.89030 -23.16695 -22.43763 -22.09237 -21.08099 -20.39991 -19.09903 -18.68884 -18.47032 -17.55437 -17.06506 -16.75213 -16.50483 -16.28841 -15.89182 -15.82552 -15.68198 -15.56963 -15.13764 -14.84808 -14.68831 -14.48556 -14.26556 -13.97903 -13.67193 -13.44144 -13.26390 -13.07577 -13.03771 -12.93237 -12.80292 -12.63101 -12.28523 -12.24823 -12.22092 -12.09636 -11.89903 -11.80177 -11.69836 -11.58310 -11.43422 -11.10027 -10.82549 -10.59839 -10.14852 -9.86249 -9.72604 -8.98603 -7.94604 -5.23204 0.26104 0.45386 1.43730 1.46823 1.50052 1.56132 2.06429 2.54881 2.56697 2.82096 3.36582 3.43225 3.56993 3.59499 3.71297 3.71808 3.90573 3.99350 4.04096 4.10171 4.12380 4.23180 4.25311 4.32840 4.34636 4.40087 4.52016 4.56318 4.63300 4.64572 4.71205 4.77991 4.89687 4.91136 4.95241 4.95938 5.01083 5.01904 5.08929 5.11564 5.19326 5.30803 5.39061 5.45417 5.50921 5.51580 5.58100 5.69858 5.72902 6.03268 6.27435 6.44751 7.08264 7.32847 8.10819 8.32982 9.28822 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.002426 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.740068 B =11539.870741 C =12714.385159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.730 5.730 10 C 0.145 3.855 11 H 0.082 0.918 12 C -0.135 4.135 13 C -0.096 4.096 14 H 0.120 0.880 15 C 0.137 3.863 16 N -0.702 5.702 17 C 0.504 3.496 18 O -0.573 6.573 19 C 0.142 3.858 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.130 4.130 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.145 4.145 28 C 0.035 3.965 29 O -0.361 6.361 30 C -0.153 4.153 31 H 0.250 0.750 32 H 0.372 0.628 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.414 0.586 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -27.711 -12.153 31.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.367 5.367 10 C 0.036 3.964 11 H 0.100 0.900 12 C -0.174 4.174 13 C -0.115 4.115 14 H 0.138 0.862 15 C 0.013 3.987 16 N -0.352 5.352 17 C 0.289 3.711 18 O -0.453 6.453 19 C 0.098 3.902 20 C -0.102 4.102 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.120 4.120 26 C -0.183 4.183 27 C -0.183 4.183 28 C -0.041 4.041 29 O -0.280 6.280 30 C -0.194 4.194 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.251 0.749 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.149 0.851 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.141 0.859 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.190 -27.516 -11.991 30.865 hybrid contribution -0.216 1.305 0.085 1.325 sum 6.974 -26.212 -11.906 29.622 Atomic orbital electron populations 1.69824 1.06743 1.26106 1.59672 1.25611 0.96372 1.01282 1.03885 0.85202 0.77168 0.79094 0.78265 1.20375 1.22390 1.20165 1.19702 0.91602 0.85371 1.40876 0.90300 1.42626 1.05340 1.01229 1.87515 1.21935 0.95679 0.83867 0.94953 0.89986 1.23320 0.99920 0.95758 0.98415 1.22468 0.99352 0.92958 0.96723 0.86203 1.21286 0.94856 0.91575 0.90962 1.45904 1.13998 1.33863 1.41463 1.21258 0.87118 0.81372 0.81314 1.90675 1.16817 1.71503 1.66292 1.20804 0.84425 0.95042 0.89881 1.19470 0.97143 0.99997 0.93543 1.21266 0.98181 1.00278 0.93881 1.21438 0.99207 0.97094 0.96754 1.21578 0.93843 0.97820 1.00405 1.21483 0.99902 0.99718 0.93683 1.21142 0.97657 0.95555 0.97644 1.23121 0.99491 0.90945 1.04711 1.23161 0.96135 0.97862 1.01104 1.23898 1.02343 0.83087 0.94725 1.88901 1.24591 1.42397 1.72149 1.23720 1.00876 0.96165 0.98643 0.94088 0.79669 0.91479 0.90067 0.91320 0.93643 0.74949 0.84941 0.83665 0.83706 0.84074 0.85077 0.90001 0.88219 0.88964 0.88252 0.85892 0.92186 0.91594 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.62 9.97 84.04 0.84 -12.78 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -37.31 5.40 -320.44 -1.73 -39.04 16 10 C 0.15 5.58 4.48 45.52 0.20 5.79 16 11 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 12 C -0.13 -4.21 7.39 31.12 0.23 -3.98 16 13 C -0.10 -2.48 3.75 -10.27 -0.04 -2.52 16 14 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 15 C 0.14 3.70 5.51 86.38 0.48 4.17 16 16 N -0.70 -17.09 5.47 -463.05 -2.53 -19.62 16 17 C 0.50 13.53 6.65 87.66 0.58 14.11 16 18 O -0.57 -19.36 15.58 -3.05 -0.05 -19.40 16 19 C 0.14 2.96 0.91 -11.92 -0.01 2.95 16 20 C -0.10 -2.18 4.84 -19.87 -0.10 -2.27 16 21 C -0.12 -2.36 8.74 22.27 0.19 -2.17 16 22 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 25 C -0.10 -2.09 9.36 22.27 0.21 -1.88 16 26 C -0.14 -2.52 5.64 31.58 0.18 -2.34 16 27 C -0.15 -1.68 7.15 31.90 0.23 -1.45 16 28 C 0.04 0.46 7.66 72.67 0.56 1.01 16 29 O -0.36 -6.59 9.30 -148.98 -1.39 -7.98 16 30 C -0.15 -5.10 7.43 31.12 0.23 -4.86 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.37 20.65 7.92 -92.71 -0.73 19.92 16 33 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.47 7.85 -2.39 -0.02 1.45 16 37 H 0.41 8.53 7.97 -92.71 -0.74 7.79 16 38 H 0.13 2.39 6.44 -2.91 -0.02 2.37 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.13 2.48 7.55 -2.91 -0.02 2.46 16 43 H 0.08 1.70 6.74 -2.38 -0.02 1.69 16 44 H 0.10 1.52 5.78 -2.39 -0.01 1.50 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 2.05 7.90 -2.39 -0.02 2.03 16 Total: -1.00 -72.31 404.59 1.01 -71.30 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: -0.52 Total: 42.95 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 4.92 Total: -16.26 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -3.98 Total: -119.09 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.43 Total: -27.38 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -72.31 1.01 -71.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263849580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.504 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds