Wall clock time and date at job start Wed Apr 1 2020 03:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47146 * 270.00396 * 3 2 1 5 5 H 1.48496 * 109.47177 * 30.00074 * 3 2 1 6 6 H 1.48498 * 109.47393 * 150.00121 * 3 2 1 7 7 C 1.38810 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00320 * 359.97438 * 7 2 1 9 9 N 1.36946 * 119.99517 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99413 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.90844 * 336.25384 * 10 9 7 12 12 C 1.53783 * 113.61224 * 107.50388 * 10 9 7 13 13 C 1.53782 * 87.08093 * 89.11279 * 12 10 9 14 14 H 1.09002 * 113.61444 * 270.88040 * 13 12 10 15 15 C 1.53000 * 113.61263 * 139.98049 * 13 12 10 16 16 N 1.46502 * 109.47045 * 87.50367 * 15 13 12 17 17 C 1.34782 * 120.00046 * 179.97438 * 16 15 13 18 18 O 1.21277 * 119.99755 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99689 * 180.02562 * 17 16 15 20 20 O 1.42901 * 109.46656 * 179.97438 * 19 17 16 21 21 C 1.42906 * 113.99999 * 179.97438 * 20 19 17 22 22 C 1.50705 * 109.46973 * 180.02562 * 21 20 19 23 23 C 1.32564 * 119.99871 * 136.24494 * 22 21 20 24 24 C 1.47812 * 119.99848 * 8.02914 * 23 22 21 25 25 C 1.39537 * 120.13990 * 215.10964 * 24 23 22 26 26 C 1.37978 * 119.85357 * 179.68281 * 25 24 23 27 27 C 1.38344 * 120.14264 * 0.61679 * 26 25 24 28 28 C 1.38342 * 120.28464 * 359.67975 * 27 26 25 29 29 C 1.37971 * 120.14569 * 359.97438 * 28 27 26 30 30 C 1.53776 * 113.61245 * 204.99869 * 10 9 7 31 31 H 0.97000 * 120.00017 * 359.97438 * 1 2 3 32 32 H 0.96991 * 120.00043 * 359.97438 * 9 7 2 33 33 H 1.08997 * 113.61531 * 203.66542 * 12 10 9 34 34 H 1.09002 * 113.61298 * 334.56963 * 12 10 9 35 35 H 1.08998 * 109.47415 * 207.50081 * 15 13 12 36 36 H 1.08993 * 109.47337 * 327.50353 * 15 13 12 37 37 H 0.97008 * 120.00323 * 359.97438 * 16 15 13 38 38 H 1.09002 * 109.47306 * 299.99824 * 19 17 16 39 39 H 1.08993 * 109.47325 * 60.00028 * 19 17 16 40 40 H 1.08996 * 109.46757 * 300.00025 * 21 20 19 41 41 H 1.08998 * 109.46955 * 60.00284 * 21 20 19 42 42 H 1.08000 * 119.99829 * 316.23868 * 22 21 20 43 43 H 1.07994 * 120.00095 * 188.03133 * 23 22 21 44 44 H 1.07997 * 120.07504 * 359.97438 * 25 24 23 45 45 H 1.08003 * 119.92586 * 180.32231 * 26 25 24 46 46 H 1.08001 * 119.85978 * 179.70836 * 27 26 25 47 47 H 1.08006 * 119.92667 * 180.02562 * 28 27 26 48 48 H 1.08003 * 120.07594 * 180.02562 * 29 28 27 49 49 H 1.09001 * 113.61753 * 25.43525 * 30 10 9 50 50 H 1.08998 * 113.61537 * 156.25867 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 1 3.5285 -3.2976 0.4036 12 6 4.7866 -2.7927 -1.3451 13 6 6.0124 -2.0236 -0.8245 14 1 5.9869 -0.9574 -1.0497 15 6 7.3466 -2.6776 -1.1895 16 7 7.7812 -2.1995 -2.5043 17 6 8.9386 -2.6430 -3.0339 18 8 9.6199 -3.4383 -2.4221 19 6 9.3859 -2.1507 -4.3861 20 8 10.6326 -2.7607 -4.7265 21 6 11.1478 -2.3600 -5.9978 22 6 12.4574 -3.0609 -6.2526 23 6 12.7073 -3.5858 -7.4440 24 6 11.7853 -3.3328 -8.5712 25 6 11.5534 -4.3262 -9.5233 26 6 10.6865 -4.0860 -10.5695 27 6 10.0577 -2.8589 -10.6828 28 6 10.2881 -1.8677 -9.7457 29 6 11.1472 -2.0976 -8.6908 30 6 5.5263 -2.3656 0.5938 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3620 -0.0014 33 1 4.9707 -3.8561 -1.4976 34 1 4.3046 -2.3186 -2.2001 35 1 8.0957 -2.4165 -0.4421 36 1 7.2245 -3.7603 -1.2187 37 1 7.2361 -1.5637 -2.9938 38 1 8.6371 -2.4119 -5.1339 39 1 9.5077 -1.0680 -4.3566 40 1 10.4356 -2.6262 -6.7787 41 1 11.3057 -1.2815 -6.0022 42 1 13.1922 -3.1355 -5.4647 43 1 13.5846 -4.1983 -7.5909 44 1 12.0477 -5.2827 -9.4388 45 1 10.5022 -4.8559 -11.3041 46 1 9.3836 -2.6742 -11.5062 47 1 9.7938 -0.9120 -9.8396 48 1 11.3259 -1.3231 -7.9596 49 1 5.6415 -1.5469 1.3041 50 1 5.9121 -3.3120 0.9726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263865790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:27 Heat of formation + Delta-G solvation = -20.477453 kcal Electronic energy + Delta-G solvation = -27952.531065 eV Core-core repulsion = 23945.533706 eV Total energy + Delta-G solvation = -4006.997360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.01879 -40.38708 -39.96692 -38.59202 -36.07932 -35.60954 -34.97606 -32.69601 -31.97483 -31.01247 -30.05516 -28.08934 -26.72135 -26.44791 -25.25475 -23.45290 -23.26283 -23.10071 -21.75026 -20.38006 -20.07090 -19.55173 -18.41435 -18.00146 -17.48783 -17.31228 -16.80834 -16.66451 -16.44413 -16.24257 -15.95552 -15.72481 -15.46028 -15.12144 -15.05686 -14.64699 -14.51307 -14.39552 -14.27575 -14.00006 -13.56872 -13.38639 -13.35183 -13.18778 -13.05862 -12.97540 -12.64848 -12.55786 -12.24026 -11.95971 -11.89028 -11.69004 -11.64069 -11.50540 -11.14260 -11.04809 -10.90777 -10.75099 -10.53590 -10.09328 -9.80684 -9.28938 -9.21896 -8.01922 -5.35766 0.03212 0.48380 1.29154 1.38188 1.42258 1.49787 1.55676 1.91260 2.48929 2.89732 3.07850 3.28512 3.51941 3.66161 3.74830 3.77955 3.88381 3.96551 4.02138 4.07247 4.12156 4.20427 4.22723 4.26578 4.28708 4.33882 4.38180 4.39363 4.57943 4.60363 4.70733 4.77073 4.81648 4.93943 4.98255 5.04334 5.09130 5.14556 5.26025 5.32731 5.38244 5.39963 5.48528 5.55154 5.61550 5.63926 5.75748 5.81587 6.03606 6.09847 6.23249 6.54036 7.08638 7.20757 7.85278 8.04312 9.19538 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.001651 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.826560 B =16951.021404 C =18127.320217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.250 1.250 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.733 5.733 10 C 0.144 3.856 11 H 0.056 0.944 12 C -0.154 4.154 13 C -0.103 4.103 14 H 0.095 0.905 15 C 0.139 3.861 16 N -0.713 5.713 17 C 0.508 3.492 18 O -0.577 6.577 19 C 0.045 3.955 20 O -0.394 6.394 21 C 0.079 3.921 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.080 4.080 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.125 4.125 30 C -0.135 4.135 31 H 0.258 0.742 32 H 0.367 0.633 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.067 0.933 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.379 -3.619 -21.017 35.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.175 1.175 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.375 5.375 10 C 0.035 3.965 11 H 0.074 0.926 12 C -0.194 4.194 13 C -0.122 4.122 14 H 0.113 0.887 15 C 0.016 3.984 16 N -0.367 5.367 17 C 0.295 3.705 18 O -0.456 6.456 19 C -0.034 4.034 20 O -0.313 6.313 21 C 0.004 3.996 22 C -0.168 4.168 23 C -0.126 4.126 24 C -0.080 4.080 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.147 4.147 29 C -0.143 4.143 30 C -0.174 4.174 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.159 0.841 48 H 0.153 0.847 49 H 0.085 0.915 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 28.730 -4.400 -20.445 35.535 hybrid contribution -0.519 1.301 -0.162 1.410 sum 28.211 -3.099 -20.607 35.073 Atomic orbital electron populations 1.69892 1.07244 1.26703 1.59641 1.25539 0.96135 1.01394 1.02647 0.85383 0.78626 0.79368 0.78233 1.20049 1.22590 1.17473 1.19065 0.82644 0.93432 1.41275 0.92676 1.42413 1.02200 1.03484 1.89354 1.21346 0.91564 0.87822 0.95794 0.92602 1.23706 0.96571 1.00156 0.99017 1.22578 0.92210 1.00020 0.97355 0.88725 1.21304 0.94918 0.98545 0.83635 1.45852 1.22539 1.47454 1.20848 1.20832 0.80838 0.80866 0.87991 1.90705 1.55578 1.35715 1.63593 1.22326 0.87975 0.99546 0.93552 1.87973 1.36720 1.68983 1.37661 1.22149 0.94101 0.99031 0.84349 1.23087 0.96839 0.99096 0.97792 1.21841 0.99704 0.99093 0.92009 1.19314 0.98017 0.94782 0.95840 1.21531 0.98801 0.99213 0.94266 1.21417 0.96926 0.97959 0.98440 1.21568 0.99759 0.93573 0.99647 1.21414 0.98535 1.00295 0.94463 1.21684 0.97105 0.96728 0.98735 1.23364 0.95461 1.02892 0.95671 0.93365 0.79898 0.89276 0.92557 0.91713 0.91812 0.74721 0.87869 0.87048 0.91045 0.90154 0.85650 0.84105 0.84812 0.84305 0.84339 0.84100 0.84652 0.91466 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.36 13.97 21.65 0.30 -62.05 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 43.89 27.73 68.60 1.90 45.79 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 7 C -0.23 -12.99 10.45 84.03 0.88 -12.11 16 8 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.73 -32.41 5.11 -320.45 -1.64 -34.05 16 10 C 0.14 5.07 4.56 45.52 0.21 5.28 16 11 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 12 C -0.15 -4.37 7.43 31.12 0.23 -4.14 16 13 C -0.10 -2.43 3.63 -10.27 -0.04 -2.47 16 14 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 15 C 0.14 3.07 5.51 86.38 0.48 3.54 16 16 N -0.71 -13.74 5.56 -463.06 -2.57 -16.31 16 17 C 0.51 11.92 7.91 87.66 0.69 12.61 16 18 O -0.58 -19.53 16.50 16.02 0.26 -19.26 16 19 C 0.05 0.73 6.42 71.24 0.46 1.18 16 20 O -0.39 -8.55 9.86 -129.94 -1.28 -9.83 16 21 C 0.08 1.16 4.53 71.24 0.32 1.48 16 22 C -0.15 -2.23 9.84 24.54 0.24 -1.98 16 23 C -0.11 -1.43 9.81 23.65 0.23 -1.20 16 24 C -0.08 -1.11 5.17 -20.12 -0.10 -1.21 16 25 C -0.12 -1.56 9.79 22.52 0.22 -1.34 16 26 C -0.13 -1.50 10.03 22.23 0.22 -1.27 16 27 C -0.13 -1.41 10.04 22.32 0.22 -1.18 16 28 C -0.13 -1.43 10.03 22.23 0.22 -1.21 16 29 C -0.12 -1.54 7.42 22.52 0.17 -1.37 16 30 C -0.13 -3.56 7.39 31.12 0.23 -3.33 16 31 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.37 15.35 5.76 -92.72 -0.53 14.81 16 33 H 0.09 2.26 7.90 -2.39 -0.02 2.24 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.51 7.84 -2.39 -0.02 1.49 16 37 H 0.42 5.75 8.47 -92.70 -0.79 4.97 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.01 5.32 -2.39 -0.01 1.00 16 41 H 0.08 0.82 7.51 -2.39 -0.02 0.80 16 42 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 47 H 0.14 0.99 8.06 -2.91 -0.02 0.96 16 48 H 0.14 1.28 5.83 -2.91 -0.02 1.27 16 49 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.10 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -78.05 413.32 1.90 -76.16 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.43 Total: 31.63 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.35 Total: -12.07 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.91 Total: -112.41 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.02 Total: -29.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -78.05 1.90 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263865790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.681 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds