Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47163 * 239.99894 * 3 2 1 5 5 H 1.48496 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46965 * 120.00281 * 3 2 1 7 7 C 1.38819 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99417 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85046 * 23.80757 * 10 9 7 12 12 C 1.53782 * 113.60972 * 155.00432 * 10 9 7 13 13 C 1.53776 * 87.08516 * 89.20166 * 12 10 9 14 14 H 1.09003 * 113.61527 * 270.80456 * 13 12 10 15 15 C 1.52998 * 113.61922 * 139.98086 * 13 12 10 16 16 N 1.46502 * 109.47114 * 176.53292 * 15 13 12 17 17 C 1.34777 * 119.99876 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00157 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.47303 * 179.97438 * 19 17 16 21 21 C 1.42906 * 113.99809 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.46616 * 180.02562 * 21 20 19 23 23 C 1.32568 * 119.99964 * 135.00183 * 22 21 20 24 24 C 1.47818 * 120.00099 * 179.97438 * 23 22 21 25 25 C 1.39530 * 120.13805 * 179.97438 * 24 23 22 26 26 C 1.37975 * 119.85264 * 179.97438 * 25 24 23 27 27 C 1.38345 * 120.14230 * 0.02562 * 26 25 24 28 28 C 1.38342 * 120.28567 * 359.97438 * 27 26 25 29 29 C 1.37970 * 120.14109 * 0.02562 * 28 27 26 30 30 C 1.53783 * 87.17128 * 25.38578 * 13 12 10 31 31 H 0.97007 * 119.99936 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00616 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.61677 * 334.64631 * 12 10 9 34 34 H 1.09002 * 113.61388 * 203.75038 * 12 10 9 35 35 H 1.08997 * 109.46940 * 56.52649 * 15 13 12 36 36 H 1.08998 * 109.47003 * 296.52539 * 15 13 12 37 37 H 0.96998 * 120.00054 * 359.97438 * 16 15 13 38 38 H 1.09010 * 109.47347 * 59.99388 * 19 17 16 39 39 H 1.09004 * 109.47350 * 299.99748 * 19 17 16 40 40 H 1.08996 * 109.47160 * 60.00267 * 21 20 19 41 41 H 1.09003 * 109.47341 * 300.00150 * 21 20 19 42 42 H 1.08001 * 120.00191 * 314.99432 * 22 21 20 43 43 H 1.08001 * 119.99850 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.07796 * 0.02562 * 25 24 23 45 45 H 1.08003 * 119.92978 * 179.72663 * 26 25 24 46 46 H 1.08000 * 119.85265 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.92532 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.06942 * 180.02562 * 29 28 27 49 49 H 1.09009 * 113.60987 * 89.16333 * 30 13 12 50 50 H 1.09003 * 113.61961 * 220.05946 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0653 -3.5639 0.4049 12 6 1.2598 -4.8288 0.5949 13 6 0.7219 -5.0805 -0.8236 14 1 -0.1896 -4.5271 -1.0495 15 6 0.6222 -6.5633 -1.1872 16 7 0.0253 -6.7008 -2.5180 17 6 -0.1622 -7.9251 -3.0493 18 8 0.1635 -8.9131 -2.4257 19 6 -0.7767 -8.0666 -4.4179 20 8 -0.8697 -9.4515 -4.7576 21 6 -1.4426 -9.6974 -6.0434 22 6 -1.4922 -11.1823 -6.2955 23 6 -2.5884 -11.7331 -6.7979 24 6 -2.6368 -13.1896 -7.0457 25 6 -3.7893 -13.7724 -7.5739 26 6 -3.8279 -15.1324 -7.8034 27 6 -2.7273 -15.9178 -7.5104 28 6 -1.5817 -15.3461 -6.9866 29 6 -1.5303 -13.9874 -6.7524 30 6 1.9995 -4.4026 -1.3461 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 0.4925 -4.5188 1.3043 34 1 1.8866 -5.6361 0.9738 35 1 -0.0012 -7.0759 -0.4546 36 1 1.6187 -7.0049 -1.1886 37 1 -0.2355 -5.9106 -3.0165 38 1 -0.1533 -7.5541 -5.1509 39 1 -1.7732 -7.6248 -4.4163 40 1 -0.8337 -9.2185 -6.8101 41 1 -2.4531 -9.2899 -6.0750 42 1 -0.6346 -11.7978 -6.0670 43 1 -3.4460 -11.1177 -7.0262 44 1 -4.6490 -13.1603 -7.8035 45 1 -4.7209 -15.5855 -8.2081 46 1 -2.7628 -16.9820 -7.6915 47 1 -0.7261 -15.9648 -6.7596 48 1 -0.6351 -13.5421 -6.3438 49 1 2.8290 -5.0932 -1.4989 50 1 1.8285 -3.7491 -2.2016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263865791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = -10.761935 kcal Electronic energy + Delta-G solvation = -27133.047705 eV Core-core repulsion = 23126.471642 eV Total energy + Delta-G solvation = -4006.576063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.93886 -39.60042 -38.67170 -37.83097 -34.98584 -34.63819 -33.23131 -31.40318 -30.98730 -30.30052 -28.91964 -26.81994 -25.63361 -25.07791 -23.66961 -23.34489 -22.34279 -21.74441 -20.74469 -19.81159 -18.44416 -17.76357 -17.49396 -17.10785 -16.88287 -16.60101 -15.88523 -15.57702 -15.35032 -15.06394 -14.91360 -14.63662 -14.19172 -14.06996 -13.79222 -13.76815 -13.45653 -13.34513 -13.20403 -12.90536 -12.66484 -12.55269 -12.23095 -11.94043 -11.81169 -11.50466 -11.41310 -11.24488 -11.06842 -10.85273 -10.73479 -10.51505 -10.23231 -10.11736 -10.06892 -9.77480 -9.71605 -9.48193 -9.36549 -9.03231 -8.90526 -8.54655 -7.03279 -5.83728 -3.12803 0.46714 0.99777 1.98512 2.55013 2.74368 3.40345 3.45084 3.45832 3.50651 3.74944 4.33700 4.36058 4.53223 4.55471 4.58616 4.64202 4.74216 4.80349 4.85267 4.90903 4.96803 5.01581 5.04096 5.06195 5.11406 5.18383 5.21220 5.42567 5.53686 5.59755 5.60781 5.68116 5.84496 5.84921 5.93035 5.98067 6.08458 6.10399 6.15548 6.19259 6.34734 6.34966 6.37490 6.56078 6.57009 6.69182 6.71832 6.87413 7.01435 7.46110 7.65834 8.17136 8.35520 9.46208 10.03617 10.37921 11.38648 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.001200 C = 0.001175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.827138 B =23332.357358 C =23831.432580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.133 3.867 16 N -0.723 5.723 17 C 0.511 3.489 18 O -0.525 6.525 19 C 0.043 3.957 20 O -0.359 6.359 21 C 0.089 3.911 22 C -0.134 4.134 23 C -0.112 4.112 24 C -0.055 4.055 25 C -0.110 4.110 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.113 4.113 30 C -0.169 4.169 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.127 0.873 49 H 0.068 0.932 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -27.230 -17.096 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.054 3.946 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.010 3.990 16 N -0.376 5.376 17 C 0.295 3.705 18 O -0.401 6.401 19 C -0.037 4.037 20 O -0.277 6.277 21 C 0.013 3.987 22 C -0.152 4.152 23 C -0.130 4.130 24 C -0.055 4.055 25 C -0.128 4.128 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.136 4.136 29 C -0.131 4.131 30 C -0.210 4.210 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.237 0.763 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.145 0.855 49 H 0.086 0.914 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.287 -27.919 -16.490 33.029 hybrid contribution -0.176 1.512 -0.532 1.612 sum -6.463 -26.408 -17.022 32.076 Atomic orbital electron populations 1.69652 1.05154 1.25919 1.57390 1.24755 0.95523 0.97770 1.02706 0.86247 0.78534 0.83362 0.77922 1.21209 1.21665 1.21170 1.19257 0.91114 0.83996 1.43139 0.91031 1.42158 1.05663 0.99425 1.87153 1.21096 0.95136 0.85593 0.92741 0.91933 1.23442 1.00518 0.99695 0.95084 1.22716 0.99609 0.92841 0.98682 0.88860 1.21490 0.98076 0.97085 0.82372 1.45951 1.63989 1.07654 1.20004 1.20183 0.79261 0.83640 0.87394 1.90729 1.49776 1.37452 1.62102 1.22233 1.01394 0.84815 0.95234 1.88044 1.83214 1.22203 1.34257 1.21504 0.97866 0.93911 0.85441 1.23091 0.98707 0.95226 0.98158 1.21603 0.97871 0.92610 1.00920 1.19024 0.94233 0.93008 0.99211 1.21278 0.97408 0.95119 0.98963 1.21110 0.98618 0.93851 1.00283 1.21243 0.93537 0.99936 0.99261 1.21126 0.98305 0.94945 0.99239 1.21394 0.98248 0.93851 0.99632 1.23918 0.95678 0.99614 1.01750 0.93383 0.78120 0.91284 0.90427 0.91751 0.91496 0.76291 0.90056 0.90088 0.91668 0.92289 0.85879 0.86084 0.85795 0.85924 0.86069 0.85849 0.85550 0.91390 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.05 5.31 -52.55 -0.28 -17.32 16 10 C 0.17 3.18 4.57 -67.03 -0.31 2.87 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 13 C -0.12 -1.73 3.63 -89.81 -0.33 -2.05 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.13 1.74 5.50 -4.04 -0.02 1.72 16 16 N -0.72 -8.40 5.56 -60.30 -0.33 -8.74 16 17 C 0.51 6.66 7.91 -10.99 -0.09 6.57 16 18 O -0.53 -9.28 16.50 -14.36 -0.24 -9.51 16 19 C 0.04 0.40 6.42 36.00 0.23 0.63 16 20 O -0.36 -4.11 9.86 -55.14 -0.54 -4.65 16 21 C 0.09 0.69 6.36 36.00 0.23 0.92 16 22 C -0.13 -1.08 9.31 -36.22 -0.34 -1.41 16 23 C -0.11 -0.82 9.51 -37.57 -0.36 -1.18 16 24 C -0.05 -0.44 5.87 -105.02 -0.62 -1.06 16 25 C -0.11 -0.77 9.79 -39.20 -0.38 -1.15 16 26 C -0.12 -0.77 10.03 -39.64 -0.40 -1.17 16 27 C -0.12 -0.78 10.04 -39.50 -0.40 -1.18 16 28 C -0.12 -0.83 10.03 -39.64 -0.40 -1.22 16 29 C -0.11 -0.90 9.40 -39.20 -0.37 -1.27 16 30 C -0.17 -2.71 7.44 -25.83 -0.19 -2.90 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.38 9.82 7.90 -40.82 -0.32 9.49 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 37 H 0.40 3.79 8.47 -40.82 -0.35 3.44 16 38 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 42 H 0.12 1.02 6.04 -52.49 -0.32 0.70 16 43 H 0.12 0.68 7.92 -52.49 -0.42 0.27 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 45 H 0.12 0.53 8.06 -52.48 -0.42 0.10 16 46 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 48 H 0.13 0.89 6.17 -52.48 -0.32 0.57 16 49 H 0.07 0.99 7.92 -51.92 -0.41 0.58 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 421.55 15.07 6.35 6.35 Total: -1.00 -33.97 421.55 -11.50 -45.47 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.99 Total: 9.83 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.17 Total: -11.56 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.11 Total: -52.78 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.78 Total: -14.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.97 -11.50 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263865791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.710 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds