Wall clock time and date at job start Wed Apr 1 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47163 * 239.99894 * 3 2 1 5 5 H 1.48496 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46965 * 120.00281 * 3 2 1 7 7 C 1.38819 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99300 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99417 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.85046 * 23.80757 * 10 9 7 12 12 C 1.53782 * 113.60972 * 155.00432 * 10 9 7 13 13 C 1.53776 * 87.08516 * 89.20166 * 12 10 9 14 14 H 1.09003 * 113.61527 * 270.80456 * 13 12 10 15 15 C 1.52998 * 113.61922 * 139.98086 * 13 12 10 16 16 N 1.46502 * 109.47114 * 176.53292 * 15 13 12 17 17 C 1.34777 * 119.99876 * 180.02562 * 16 15 13 18 18 O 1.21282 * 119.99907 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00157 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.47303 * 179.97438 * 19 17 16 21 21 C 1.42906 * 113.99809 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.46616 * 180.02562 * 21 20 19 23 23 C 1.32568 * 119.99964 * 135.00183 * 22 21 20 24 24 C 1.47818 * 120.00099 * 179.97438 * 23 22 21 25 25 C 1.39530 * 120.13805 * 179.97438 * 24 23 22 26 26 C 1.37975 * 119.85264 * 179.97438 * 25 24 23 27 27 C 1.38345 * 120.14230 * 0.02562 * 26 25 24 28 28 C 1.38342 * 120.28567 * 359.97438 * 27 26 25 29 29 C 1.37970 * 120.14109 * 0.02562 * 28 27 26 30 30 C 1.53783 * 87.17128 * 25.38578 * 13 12 10 31 31 H 0.97007 * 119.99936 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00616 * 0.02562 * 9 7 2 33 33 H 1.09002 * 113.61677 * 334.64631 * 12 10 9 34 34 H 1.09002 * 113.61388 * 203.75038 * 12 10 9 35 35 H 1.08997 * 109.46940 * 56.52649 * 15 13 12 36 36 H 1.08998 * 109.47003 * 296.52539 * 15 13 12 37 37 H 0.96998 * 120.00054 * 359.97438 * 16 15 13 38 38 H 1.09010 * 109.47347 * 59.99388 * 19 17 16 39 39 H 1.09004 * 109.47350 * 299.99748 * 19 17 16 40 40 H 1.08996 * 109.47160 * 60.00267 * 21 20 19 41 41 H 1.09003 * 109.47341 * 300.00150 * 21 20 19 42 42 H 1.08001 * 120.00191 * 314.99432 * 22 21 20 43 43 H 1.08001 * 119.99850 * 359.97438 * 23 22 21 44 44 H 1.08001 * 120.07796 * 0.02562 * 25 24 23 45 45 H 1.08003 * 119.92978 * 179.72663 * 26 25 24 46 46 H 1.08000 * 119.85265 * 179.97438 * 27 26 25 47 47 H 1.08003 * 119.92532 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.06942 * 180.02562 * 29 28 27 49 49 H 1.09009 * 113.60987 * 89.16333 * 30 13 12 50 50 H 1.09003 * 113.61961 * 220.05946 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 3.0653 -3.5639 0.4049 12 6 1.2598 -4.8288 0.5949 13 6 0.7219 -5.0805 -0.8236 14 1 -0.1896 -4.5271 -1.0495 15 6 0.6222 -6.5633 -1.1872 16 7 0.0253 -6.7008 -2.5180 17 6 -0.1622 -7.9251 -3.0493 18 8 0.1635 -8.9131 -2.4257 19 6 -0.7767 -8.0666 -4.4179 20 8 -0.8697 -9.4515 -4.7576 21 6 -1.4426 -9.6974 -6.0434 22 6 -1.4922 -11.1823 -6.2955 23 6 -2.5884 -11.7331 -6.7979 24 6 -2.6368 -13.1896 -7.0457 25 6 -3.7893 -13.7724 -7.5739 26 6 -3.8279 -15.1324 -7.8034 27 6 -2.7273 -15.9178 -7.5104 28 6 -1.5817 -15.3461 -6.9866 29 6 -1.5303 -13.9874 -6.7524 30 6 1.9995 -4.4026 -1.3461 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 0.4925 -4.5188 1.3043 34 1 1.8866 -5.6361 0.9738 35 1 -0.0012 -7.0759 -0.4546 36 1 1.6187 -7.0049 -1.1886 37 1 -0.2355 -5.9106 -3.0165 38 1 -0.1533 -7.5541 -5.1509 39 1 -1.7732 -7.6248 -4.4163 40 1 -0.8337 -9.2185 -6.8101 41 1 -2.4531 -9.2899 -6.0750 42 1 -0.6346 -11.7978 -6.0670 43 1 -3.4460 -11.1177 -7.0262 44 1 -4.6490 -13.1603 -7.8035 45 1 -4.7209 -15.5855 -8.2081 46 1 -2.7628 -16.9820 -7.6915 47 1 -0.7261 -15.9648 -6.7596 48 1 -0.6351 -13.5421 -6.3438 49 1 2.8290 -5.0932 -1.4989 50 1 1.8285 -3.7491 -2.2016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263865791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:31 Heat of formation + Delta-G solvation = -30.634886 kcal Electronic energy + Delta-G solvation = -27133.909461 eV Core-core repulsion = 23126.471642 eV Total energy + Delta-G solvation = -4007.437819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.97296 -40.12493 -39.91295 -38.65375 -36.00475 -35.51333 -34.95084 -32.17116 -31.89253 -31.47087 -29.95377 -27.83494 -26.43053 -26.36540 -25.52378 -23.85804 -23.08485 -22.85357 -21.72888 -20.39578 -19.81506 -19.32561 -18.38671 -18.04768 -17.73460 -17.31459 -16.75210 -16.58862 -16.29690 -16.17597 -15.84915 -15.70431 -15.54828 -15.18935 -14.75183 -14.63513 -14.59720 -14.24241 -13.97428 -13.90303 -13.75584 -13.33176 -13.28000 -13.14558 -12.90804 -12.89746 -12.61010 -12.34541 -12.19201 -12.06458 -11.99431 -11.75200 -11.54107 -11.46400 -11.29770 -11.02082 -10.87362 -10.70434 -10.68784 -10.08373 -9.87598 -9.08227 -8.98801 -7.94485 -5.22562 -0.06849 0.48688 1.43073 1.49279 1.51387 1.57220 1.57524 1.92970 2.56922 2.95343 3.07427 3.38307 3.66482 3.73987 3.80706 3.83507 3.86109 3.93646 4.09541 4.16775 4.18121 4.20618 4.26410 4.28101 4.33950 4.40075 4.41624 4.45754 4.53402 4.61363 4.67968 4.73486 4.77780 4.94236 5.00539 5.05346 5.12573 5.12748 5.28899 5.33853 5.36175 5.44912 5.48916 5.55477 5.60370 5.62361 5.67278 5.82498 6.05653 6.09889 6.29160 6.55490 7.21837 7.34518 8.11616 8.34222 9.28563 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.001200 C = 0.001175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.827138 B =23332.357358 C =23831.432580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.142 3.858 11 H 0.059 0.941 12 C -0.136 4.136 13 C -0.101 4.101 14 H 0.085 0.915 15 C 0.141 3.859 16 N -0.713 5.713 17 C 0.507 3.493 18 O -0.579 6.579 19 C 0.046 3.954 20 O -0.395 6.395 21 C 0.088 3.912 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.076 4.076 25 C -0.118 4.118 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.130 4.130 29 C -0.133 4.133 30 C -0.152 4.152 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.142 0.858 47 H 0.137 0.863 48 H 0.125 0.875 49 H 0.090 0.910 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.884 -27.929 -18.466 34.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.032 3.968 11 H 0.077 0.923 12 C -0.175 4.175 13 C -0.119 4.119 14 H 0.103 0.897 15 C 0.017 3.983 16 N -0.367 5.367 17 C 0.294 3.706 18 O -0.458 6.458 19 C -0.033 4.033 20 O -0.314 6.314 21 C 0.013 3.987 22 C -0.170 4.170 23 C -0.124 4.124 24 C -0.076 4.076 25 C -0.136 4.136 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.148 4.148 29 C -0.151 4.151 30 C -0.193 4.193 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.252 0.748 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.129 0.871 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.155 0.845 48 H 0.142 0.858 49 H 0.108 0.892 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.442 -28.631 -17.884 34.366 hybrid contribution -0.086 1.607 -0.109 1.613 sum -6.528 -27.023 -17.993 33.115 Atomic orbital electron populations 1.69800 1.06543 1.26136 1.59420 1.25511 0.96326 1.00924 1.03647 0.85250 0.77236 0.79339 0.78170 1.20374 1.22232 1.20551 1.19644 0.91529 0.85249 1.41280 0.90633 1.42276 1.05311 1.00488 1.87653 1.21431 0.95039 0.84936 0.95386 0.92312 1.23352 1.00003 0.98647 0.95536 1.22490 0.98498 0.93493 0.97468 0.89699 1.21285 0.98148 0.95616 0.83227 1.45862 1.63261 1.08092 1.19463 1.20906 0.78315 0.82921 0.88502 1.90704 1.52205 1.39108 1.63774 1.22338 1.03144 0.84587 0.93249 1.87996 1.83910 1.23410 1.36129 1.21662 0.99028 0.93637 0.84392 1.23132 0.98773 0.95775 0.99271 1.21781 0.98106 0.92544 1.00016 1.19268 0.94787 0.93538 1.00039 1.21571 0.97618 0.95796 0.98593 1.21455 0.99426 0.93786 0.99853 1.21572 0.93267 1.01129 0.98600 1.21387 0.99255 0.94854 0.99340 1.21568 0.98555 0.94583 1.00355 1.23726 0.97244 0.99151 0.99132 0.94012 0.79310 0.92368 0.87833 0.92111 0.91596 0.74782 0.87146 0.87217 0.89986 0.90417 0.87109 0.84249 0.84065 0.83747 0.84043 0.84550 0.85755 0.89168 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.25 -13.29 9.97 84.04 0.84 -12.45 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.89 5.31 -320.16 -1.70 -36.59 16 10 C 0.14 5.31 4.57 45.58 0.21 5.52 16 11 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16 12 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 13 C -0.10 -2.75 3.63 -10.27 -0.04 -2.79 16 14 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 15 C 0.14 3.47 5.50 86.38 0.47 3.94 16 16 N -0.71 -15.31 5.56 -463.07 -2.57 -17.89 16 17 C 0.51 12.56 7.91 87.65 0.69 13.26 16 18 O -0.58 -20.39 16.50 16.00 0.26 -20.12 16 19 C 0.05 0.75 6.42 71.23 0.46 1.21 16 20 O -0.40 -8.61 9.86 -129.94 -1.28 -9.89 16 21 C 0.09 1.22 6.36 71.24 0.45 1.68 16 22 C -0.15 -2.40 9.31 24.53 0.23 -2.17 16 23 C -0.11 -1.50 9.51 23.65 0.22 -1.27 16 24 C -0.08 -1.21 5.87 -20.12 -0.12 -1.32 16 25 C -0.12 -1.53 9.79 22.52 0.22 -1.31 16 26 C -0.13 -1.45 10.03 22.23 0.22 -1.23 16 27 C -0.13 -1.51 10.04 22.32 0.22 -1.28 16 28 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 29 C -0.13 -2.16 9.40 22.52 0.21 -1.95 16 30 C -0.15 -4.64 7.44 31.18 0.23 -4.41 16 31 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 32 H 0.37 19.42 7.90 -92.71 -0.73 18.69 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 2.59 8.10 -2.39 -0.02 2.57 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 37 H 0.42 6.86 8.47 -92.71 -0.79 6.08 16 38 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.76 7.88 -2.39 -0.02 0.74 16 42 H 0.11 1.96 6.04 -2.91 -0.02 1.94 16 43 H 0.14 1.33 7.92 -2.91 -0.02 1.31 16 44 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 45 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 46 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.12 1.93 6.17 -2.91 -0.02 1.91 16 49 H 0.09 2.38 7.92 -2.38 -0.02 2.36 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -74.70 421.55 1.90 -72.80 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.57 Total: 35.64 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 5.45 Total: -13.56 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -3.99 Total: -111.97 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.02 Total: -30.02 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.70 1.90 -72.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263865791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.162 kcal (2) G-P(sol) polarization free energy of solvation -74.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds