Wall clock time and date at job start Wed Apr 1 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.67456 * 34.29733 * 10 9 7 12 12 C 1.54893 * 110.75835 * 271.06629 * 10 9 7 13 13 C 1.54466 * 104.10351 * 203.89068 * 12 10 9 14 14 C 1.53873 * 106.68498 * 23.34191 * 13 12 10 15 15 H 1.08998 * 110.07654 * 240.85294 * 14 13 12 16 16 C 1.52998 * 110.03515 * 119.44250 * 14 13 12 17 17 N 1.46493 * 109.47175 * 67.83098 * 16 14 13 18 18 C 1.34783 * 120.00333 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99270 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00093 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46934 * 180.02562 * 20 18 17 22 22 H 1.09003 * 110.13143 * 54.30007 * 21 20 18 23 23 O 1.43946 * 110.15739 * 292.60269 * 21 20 18 24 24 C 1.44113 * 104.86083 * 269.30197 * 23 21 20 25 25 C 1.51084 * 105.97071 * 331.55094 * 24 23 21 26 26 C 1.37969 * 132.68831 * 197.67923 * 25 24 23 27 27 C 1.38301 * 119.91682 * 179.97438 * 26 25 24 28 28 C 1.38263 * 120.04332 * 0.03639 * 27 26 25 29 29 C 1.38300 * 120.04083 * 359.97438 * 28 27 26 30 30 C 1.37970 * 119.91901 * 0.02562 * 29 28 27 31 31 C 1.54270 * 106.59827 * 0.15860 * 14 13 12 32 32 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.48148 * 322.42050 * 12 10 9 35 35 H 1.09001 * 110.48686 * 85.06183 * 12 10 9 36 36 H 1.09002 * 109.85917 * 264.10044 * 13 12 10 37 37 H 1.09001 * 110.12053 * 142.72329 * 13 12 10 38 38 H 1.08998 * 109.47136 * 187.83654 * 16 14 13 39 39 H 1.09001 * 109.46875 * 307.83153 * 16 14 13 40 40 H 0.97004 * 120.00075 * 0.02562 * 17 16 14 41 41 H 1.09000 * 109.47004 * 300.00286 * 20 18 17 42 42 H 1.09004 * 109.46730 * 60.00179 * 20 18 17 43 43 H 1.09001 * 110.14098 * 212.42970 * 24 23 21 44 44 H 1.09000 * 110.16046 * 90.67650 * 24 23 21 45 45 H 1.07996 * 120.04075 * 0.02562 * 26 25 24 46 46 H 1.07995 * 119.97840 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.97924 * 180.02562 * 28 27 26 48 48 H 1.07997 * 120.04165 * 180.02562 * 29 28 27 49 49 H 1.09008 * 110.48376 * 217.71503 * 31 14 13 50 50 H 1.08998 * 110.60372 * 95.12704 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9799 -3.5689 0.5752 12 6 2.3557 -4.1188 -1.4476 13 6 2.5352 -5.6481 -1.3254 14 6 1.7862 -6.0805 -0.0527 15 1 2.4809 -6.5334 0.6546 16 6 0.6788 -7.0745 -0.4085 17 7 1.2783 -8.3284 -0.8714 18 6 0.4892 -9.3566 -1.2413 19 8 -0.7173 -9.2433 -1.1913 20 6 1.1060 -10.6467 -1.7170 21 6 -0.0014 -11.6406 -2.0728 22 1 -0.6902 -11.1939 -2.7898 23 8 -0.7109 -12.0388 -0.8853 24 6 -0.0125 -13.2070 -0.4117 25 6 0.5908 -13.8554 -1.6358 26 6 1.0854 -15.1207 -1.8764 27 6 1.5870 -15.4392 -3.1253 28 6 1.5936 -14.4907 -4.1312 29 6 1.0980 -13.2223 -3.8899 30 6 0.5975 -12.9044 -2.6441 31 6 1.1732 -4.8014 0.5540 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 1.5161 -3.8858 -2.1025 35 1 3.2693 -3.6526 -1.8165 36 1 3.5941 -5.8907 -1.2361 37 1 2.1097 -6.1464 -2.1965 38 1 0.0672 -7.2677 0.4728 39 1 0.0554 -6.6563 -1.1988 40 1 2.2433 -8.4191 -0.9110 41 1 1.7176 -10.4537 -2.5983 42 1 1.7295 -11.0644 -0.9264 43 1 -0.7102 -13.8917 0.0705 44 1 0.7735 -12.9178 0.2859 45 1 1.0801 -15.8617 -1.0908 46 1 1.9741 -16.4295 -3.3148 47 1 1.9851 -14.7407 -5.1061 48 1 1.1027 -12.4815 -4.6758 49 1 1.2261 -4.8322 1.6423 50 1 0.1409 -4.6781 0.2264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264488641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:56 Heat of formation + Delta-G solvation = -49.683433 kcal Electronic energy + Delta-G solvation = -28821.350711 eV Core-core repulsion = 24813.086885 eV Total energy + Delta-G solvation = -4008.263826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35390 -39.68311 -38.16419 -37.62616 -34.87997 -33.36881 -32.80608 -31.74176 -30.97576 -30.37958 -28.93993 -27.45604 -26.72771 -24.80773 -23.82593 -23.02517 -21.99904 -21.57258 -20.52932 -19.63130 -19.34913 -17.55308 -17.10809 -17.07962 -16.88649 -16.26087 -16.07006 -15.69024 -15.53812 -14.94008 -14.85080 -14.51281 -14.17467 -13.91338 -13.66687 -13.56301 -13.48515 -13.19112 -12.99063 -12.81623 -12.70619 -12.32971 -12.20505 -12.03831 -11.82884 -11.69557 -11.29446 -11.13413 -10.85226 -10.76669 -10.58497 -10.54716 -10.39300 -10.25595 -10.15511 -9.99527 -9.77931 -9.63458 -9.38393 -9.07603 -9.04104 -8.85590 -6.92641 -5.74741 -3.03376 0.72982 0.83620 2.58894 3.01457 3.21495 3.44805 3.49148 3.50411 3.57758 3.75602 4.15104 4.40322 4.47098 4.54399 4.60128 4.71328 4.76845 4.88190 4.91855 4.94973 4.97507 5.04789 5.05668 5.09001 5.21011 5.36979 5.48937 5.54173 5.55686 5.57214 5.71263 5.77107 5.86878 5.90755 5.92702 5.96533 5.98050 6.04513 6.08982 6.24715 6.34839 6.36484 6.41718 6.45765 6.48565 6.58625 6.73527 6.88658 7.12704 7.42668 7.71344 8.17753 8.44158 9.54824 10.14029 10.48112 11.47822 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.001555 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.422071 B =18002.635839 C =18353.063141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.073 0.927 16 C 0.127 3.873 17 N -0.730 5.730 18 C 0.512 3.488 19 O -0.527 6.527 20 C -0.156 4.156 21 C 0.138 3.862 22 H 0.113 0.887 23 O -0.333 6.333 24 C 0.081 3.919 25 C -0.127 4.127 26 C -0.096 4.096 27 C -0.114 4.114 28 C -0.116 4.116 29 C -0.090 4.090 30 C -0.125 4.125 31 C -0.122 4.122 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.063 0.937 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -34.012 -5.602 34.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.360 5.360 10 C 0.066 3.934 11 H 0.071 0.929 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.119 4.119 15 H 0.091 0.909 16 C 0.004 3.996 17 N -0.382 5.382 18 C 0.297 3.703 19 O -0.403 6.403 20 C -0.196 4.196 21 C 0.080 3.920 22 H 0.131 0.869 23 O -0.251 6.251 24 C 0.005 3.995 25 C -0.127 4.127 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.134 4.134 29 C -0.108 4.108 30 C -0.125 4.125 31 C -0.161 4.161 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.082 0.918 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.048 -33.629 -5.433 34.437 hybrid contribution 0.967 0.751 -0.189 1.238 sum 6.015 -32.878 -5.622 33.893 Atomic orbital electron populations 1.69657 1.05098 1.25755 1.57594 1.24748 0.95507 0.97684 1.03032 0.86273 0.78517 0.83629 0.77798 1.21704 1.21295 1.21326 1.19212 0.90962 0.84210 1.42791 0.91267 1.42378 1.05760 0.99764 1.88146 1.21158 0.94084 0.85623 0.92528 0.92856 1.23109 1.01297 0.92706 1.01343 1.22238 0.99090 0.97965 0.96495 1.21950 0.96467 0.95667 0.97847 0.90901 1.21552 0.95750 0.82588 0.99743 1.46076 1.10048 1.14359 1.67677 1.20359 0.87425 0.84765 0.77712 1.90754 1.14244 1.82358 1.52933 1.22121 0.99542 0.94075 1.03889 1.21011 0.92815 0.90481 0.87717 0.86938 1.89359 1.51363 1.43306 1.41092 1.21867 0.96599 0.87557 0.93520 1.21128 1.00185 0.94850 0.96536 1.20426 0.98701 0.94834 0.97447 1.21172 0.99391 0.99693 0.92961 1.21170 0.99624 0.93122 0.99524 1.20471 0.98023 0.96984 0.95329 1.20998 1.00646 0.96013 0.94887 1.22588 1.00329 0.93400 0.99802 0.93465 0.78184 0.91857 0.92594 0.92528 0.92405 0.91573 0.91189 0.76772 0.87721 0.88541 0.88367 0.90607 0.85669 0.85434 0.85358 0.85498 0.91781 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -18.09 5.24 -51.50 -0.27 -18.36 16 10 C 0.18 3.45 3.54 -65.94 -0.23 3.21 16 11 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 12 C -0.14 -2.49 6.53 -24.96 -0.16 -2.65 16 13 C -0.12 -1.54 6.19 -25.51 -0.16 -1.70 16 14 C -0.10 -1.25 2.96 -89.50 -0.27 -1.51 16 15 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.13 1.59 4.69 -4.05 -0.02 1.57 16 17 N -0.73 -7.49 5.34 -60.30 -0.32 -7.81 16 18 C 0.51 6.00 7.74 -10.98 -0.08 5.92 16 19 O -0.53 -8.60 15.54 -5.10 -0.08 -8.68 16 20 C -0.16 -1.26 5.37 -27.88 -0.15 -1.41 16 21 C 0.14 1.33 2.92 -27.70 -0.08 1.25 16 22 H 0.11 1.19 7.95 -51.93 -0.41 0.77 16 23 O -0.33 -3.90 10.85 -45.89 -0.50 -4.40 16 24 C 0.08 0.66 7.39 36.19 0.27 0.92 16 25 C -0.13 -0.99 6.32 -104.40 -0.66 -1.65 16 26 C -0.10 -0.60 10.04 -39.66 -0.40 -1.00 16 27 C -0.11 -0.63 10.05 -39.55 -0.40 -1.03 16 28 C -0.12 -0.66 10.05 -39.55 -0.40 -1.06 16 29 C -0.09 -0.60 10.04 -39.66 -0.40 -1.00 16 30 C -0.13 -1.02 5.62 -104.40 -0.59 -1.61 16 31 C -0.12 -1.96 5.98 -25.07 -0.15 -2.11 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.38 10.29 7.74 -40.82 -0.32 9.98 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.71 7.61 -51.93 -0.40 0.31 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 2.98 8.35 -40.82 -0.34 2.63 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.65 7.97 -51.93 -0.41 0.24 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 47 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 48 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 50 H 0.07 1.19 7.73 -51.93 -0.40 0.79 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -34.47 407.06 -11.62 -46.09 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.17 Total: 8.44 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -4.12 Total: -11.19 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.13 Total: -53.82 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.58 Total: -13.08 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.47 -11.62 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264488641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.592 kcal (2) G-P(sol) polarization free energy of solvation -34.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds