Wall clock time and date at job start Wed Apr 1 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.67456 * 34.29733 * 10 9 7 12 12 C 1.54893 * 110.75835 * 271.06629 * 10 9 7 13 13 C 1.54466 * 104.10351 * 203.89068 * 12 10 9 14 14 C 1.53873 * 106.68498 * 23.34191 * 13 12 10 15 15 H 1.08998 * 110.07654 * 240.85294 * 14 13 12 16 16 C 1.52998 * 110.03515 * 119.44250 * 14 13 12 17 17 N 1.46493 * 109.47175 * 67.83098 * 16 14 13 18 18 C 1.34783 * 120.00333 * 179.97438 * 17 16 14 19 19 O 1.21278 * 119.99270 * 0.02562 * 18 17 16 20 20 C 1.50701 * 120.00093 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46934 * 180.02562 * 20 18 17 22 22 H 1.09003 * 110.13143 * 54.30007 * 21 20 18 23 23 O 1.43946 * 110.15739 * 292.60269 * 21 20 18 24 24 C 1.44113 * 104.86083 * 269.30197 * 23 21 20 25 25 C 1.51084 * 105.97071 * 331.55094 * 24 23 21 26 26 C 1.37969 * 132.68831 * 197.67923 * 25 24 23 27 27 C 1.38301 * 119.91682 * 179.97438 * 26 25 24 28 28 C 1.38263 * 120.04332 * 0.03639 * 27 26 25 29 29 C 1.38300 * 120.04083 * 359.97438 * 28 27 26 30 30 C 1.37970 * 119.91901 * 0.02562 * 29 28 27 31 31 C 1.54270 * 106.59827 * 0.15860 * 14 13 12 32 32 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 33 33 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.48148 * 322.42050 * 12 10 9 35 35 H 1.09001 * 110.48686 * 85.06183 * 12 10 9 36 36 H 1.09002 * 109.85917 * 264.10044 * 13 12 10 37 37 H 1.09001 * 110.12053 * 142.72329 * 13 12 10 38 38 H 1.08998 * 109.47136 * 187.83654 * 16 14 13 39 39 H 1.09001 * 109.46875 * 307.83153 * 16 14 13 40 40 H 0.97004 * 120.00075 * 0.02562 * 17 16 14 41 41 H 1.09000 * 109.47004 * 300.00286 * 20 18 17 42 42 H 1.09004 * 109.46730 * 60.00179 * 20 18 17 43 43 H 1.09001 * 110.14098 * 212.42970 * 24 23 21 44 44 H 1.09000 * 110.16046 * 90.67650 * 24 23 21 45 45 H 1.07996 * 120.04075 * 0.02562 * 26 25 24 46 46 H 1.07995 * 119.97840 * 180.02562 * 27 26 25 47 47 H 1.07997 * 119.97924 * 180.02562 * 28 27 26 48 48 H 1.07997 * 120.04165 * 180.02562 * 29 28 27 49 49 H 1.09008 * 110.48376 * 217.71503 * 31 14 13 50 50 H 1.08998 * 110.60372 * 95.12704 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9799 -3.5689 0.5752 12 6 2.3557 -4.1188 -1.4476 13 6 2.5352 -5.6481 -1.3254 14 6 1.7862 -6.0805 -0.0527 15 1 2.4809 -6.5334 0.6546 16 6 0.6788 -7.0745 -0.4085 17 7 1.2783 -8.3284 -0.8714 18 6 0.4892 -9.3566 -1.2413 19 8 -0.7173 -9.2433 -1.1913 20 6 1.1060 -10.6467 -1.7170 21 6 -0.0014 -11.6406 -2.0728 22 1 -0.6902 -11.1939 -2.7898 23 8 -0.7109 -12.0388 -0.8853 24 6 -0.0125 -13.2070 -0.4117 25 6 0.5908 -13.8554 -1.6358 26 6 1.0854 -15.1207 -1.8764 27 6 1.5870 -15.4392 -3.1253 28 6 1.5936 -14.4907 -4.1312 29 6 1.0980 -13.2223 -3.8899 30 6 0.5975 -12.9044 -2.6441 31 6 1.1732 -4.8014 0.5540 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 1.5161 -3.8858 -2.1025 35 1 3.2693 -3.6526 -1.8165 36 1 3.5941 -5.8907 -1.2361 37 1 2.1097 -6.1464 -2.1965 38 1 0.0672 -7.2677 0.4728 39 1 0.0554 -6.6563 -1.1988 40 1 2.2433 -8.4191 -0.9110 41 1 1.7176 -10.4537 -2.5983 42 1 1.7295 -11.0644 -0.9264 43 1 -0.7102 -13.8917 0.0705 44 1 0.7735 -12.9178 0.2859 45 1 1.0801 -15.8617 -1.0908 46 1 1.9741 -16.4295 -3.3148 47 1 1.9851 -14.7407 -5.1061 48 1 1.1027 -12.4815 -4.6758 49 1 1.2261 -4.8322 1.6423 50 1 0.1409 -4.6781 0.2264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264488641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:55 Heat of formation + Delta-G solvation = -71.513238 kcal Electronic energy + Delta-G solvation = -28822.297323 eV Core-core repulsion = 24813.086885 eV Total energy + Delta-G solvation = -4009.210437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96749 -40.62796 -39.38148 -38.26454 -36.30028 -34.95758 -33.49299 -32.56880 -32.26162 -31.25131 -30.11628 -28.81366 -27.54237 -25.90106 -25.02405 -24.44090 -22.50224 -22.22440 -21.54684 -20.95806 -20.54893 -19.15362 -18.28569 -17.75455 -17.56867 -17.07127 -16.94115 -16.74293 -16.47558 -16.17004 -15.95755 -15.58226 -15.18526 -15.08266 -14.74104 -14.56124 -14.31930 -14.18085 -14.00796 -13.76832 -13.58812 -13.46216 -13.29371 -12.93715 -12.87473 -12.77680 -12.66260 -12.38982 -12.20744 -12.14863 -11.96276 -11.77851 -11.76474 -11.64614 -11.51867 -11.24577 -11.05292 -10.88139 -10.86689 -10.05691 -9.84196 -9.55259 -8.97709 -7.93389 -5.21770 0.25807 0.39134 1.46860 1.50125 1.56276 1.68662 2.18026 2.57231 2.73631 2.94852 3.21230 3.38670 3.56716 3.66880 3.73091 3.78420 3.81234 3.98287 4.09714 4.20842 4.23746 4.30740 4.40210 4.41309 4.44637 4.50854 4.56190 4.60128 4.62863 4.66132 4.69383 4.79635 4.80165 4.84589 4.92783 4.94456 5.09368 5.09590 5.14278 5.21023 5.39229 5.41279 5.44912 5.48301 5.50643 5.54994 5.57556 5.64204 5.80051 6.00366 6.29015 6.60708 7.32126 7.34091 8.13026 8.34622 9.30162 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.001555 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.422071 B =18002.635839 C =18353.063141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.297 1.297 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.164 3.836 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.103 0.897 16 C 0.134 3.866 17 N -0.715 5.715 18 C 0.509 3.491 19 O -0.580 6.580 20 C -0.143 4.143 21 C 0.135 3.865 22 H 0.090 0.910 23 O -0.370 6.370 24 C 0.077 3.923 25 C -0.140 4.140 26 C -0.102 4.102 27 C -0.115 4.115 28 C -0.119 4.119 29 C -0.098 4.098 30 C -0.140 4.140 31 C -0.117 4.117 32 H 0.250 0.750 33 H 0.370 0.630 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.417 0.583 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.144 0.856 46 H 0.152 0.848 47 H 0.151 0.849 48 H 0.139 0.861 49 H 0.068 0.932 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.249 -36.564 -6.112 38.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.224 1.224 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.055 3.945 11 H 0.073 0.927 12 C -0.180 4.180 13 C -0.144 4.144 14 C -0.101 4.101 15 H 0.122 0.878 16 C 0.010 3.990 17 N -0.368 5.368 18 C 0.296 3.704 19 O -0.460 6.460 20 C -0.183 4.183 21 C 0.076 3.924 22 H 0.108 0.892 23 O -0.289 6.289 24 C 0.001 3.999 25 C -0.140 4.140 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.137 4.137 29 C -0.116 4.116 30 C -0.140 4.140 31 C -0.156 4.156 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.254 0.746 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.169 0.831 48 H 0.157 0.843 49 H 0.087 0.913 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.352 -36.232 -5.948 37.655 hybrid contribution -0.030 1.442 -0.042 1.443 sum 8.322 -34.790 -5.990 36.270 Atomic orbital electron populations 1.69831 1.06709 1.26012 1.59766 1.25588 0.96359 1.01195 1.03995 0.85205 0.77154 0.79166 0.78214 1.22378 1.20245 1.20417 1.19640 0.91486 0.85344 1.40772 0.90501 1.42614 1.05344 1.01191 1.88397 1.21478 0.94246 0.84516 0.94250 0.92694 1.22940 0.99949 0.96242 0.98865 1.22165 1.01159 0.94151 0.96931 1.21814 0.96434 0.93787 0.98111 0.87848 1.21286 0.95552 0.83552 0.98604 1.45894 1.10941 1.13142 1.66780 1.21024 0.86834 0.85843 0.76668 1.90738 1.16721 1.83353 1.55162 1.22096 0.99168 0.91476 1.05538 1.20992 0.92773 0.91581 0.87016 0.89172 1.89309 1.52884 1.44740 1.41982 1.22012 0.96976 0.86845 0.94056 1.21200 1.01018 0.95584 0.96235 1.20720 0.98245 0.94543 0.98470 1.21542 0.98505 1.00778 0.92468 1.21509 0.98940 0.92597 1.00650 1.20718 0.97879 0.97959 0.95039 1.20933 1.01876 0.95383 0.95801 1.22494 0.98944 0.93999 1.00208 0.94159 0.79805 0.94447 0.92988 0.89392 0.91388 0.92720 0.93431 0.74579 0.84821 0.86594 0.87698 0.89435 0.83855 0.82989 0.83099 0.84283 0.91289 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 4 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.24 -13.51 9.97 84.03 0.84 -12.68 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.84 5.24 -316.86 -1.66 -39.50 16 10 C 0.16 6.34 3.54 46.29 0.16 6.51 16 11 H 0.06 2.12 8.11 -2.39 -0.02 2.10 16 12 C -0.14 -4.72 6.53 31.74 0.21 -4.52 16 13 C -0.11 -2.42 6.19 31.39 0.19 -2.23 16 14 C -0.08 -1.86 2.96 -10.07 -0.03 -1.89 16 15 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 16 C 0.13 3.24 4.69 86.38 0.40 3.64 16 17 N -0.71 -13.19 5.34 -463.07 -2.47 -15.67 16 18 C 0.51 11.54 7.74 87.66 0.68 12.21 16 19 O -0.58 -19.54 15.54 7.16 0.11 -19.42 16 20 C -0.14 -2.08 5.37 29.85 0.16 -1.92 16 21 C 0.13 2.60 2.92 29.97 0.09 2.69 16 22 H 0.09 2.04 7.95 -2.39 -0.02 2.02 16 23 O -0.37 -8.92 10.85 -138.79 -1.51 -10.43 16 24 C 0.08 1.21 7.39 71.36 0.53 1.74 16 25 C -0.14 -2.02 6.32 -19.72 -0.12 -2.15 16 26 C -0.10 -1.06 10.04 22.22 0.22 -0.83 16 27 C -0.12 -0.95 10.05 22.29 0.22 -0.72 16 28 C -0.12 -1.04 10.05 22.29 0.22 -0.81 16 29 C -0.10 -1.14 10.04 22.22 0.22 -0.91 16 30 C -0.14 -2.14 5.62 -19.72 -0.11 -2.26 16 31 C -0.12 -3.72 5.98 31.67 0.19 -3.53 16 32 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 33 H 0.37 20.71 7.74 -92.71 -0.72 19.99 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.47 7.61 -2.39 -0.02 1.45 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.42 4.64 8.35 -92.71 -0.77 3.86 16 41 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 1.26 7.97 -2.38 -0.02 1.24 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 46 H 0.15 0.45 8.06 -2.91 -0.02 0.42 16 47 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 48 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 49 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.05 1.83 7.73 -2.39 -0.02 1.81 16 Total: -1.00 -78.41 407.06 0.78 -77.63 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.55 Total: 31.13 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.55 Total: -11.82 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -3.85 Total: -115.77 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -1.39 Total: -29.85 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.41 0.78 -77.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264488641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.118 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds