Wall clock time and date at job start Wed Apr 1 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.43843 * 36.08899 * 10 9 7 12 12 C 1.54273 * 110.48752 * 273.54686 * 10 9 7 13 13 C 1.53873 * 106.59944 * 217.71261 * 12 10 9 14 14 C 1.54266 * 106.60081 * 359.97438 * 13 12 10 15 15 H 1.09000 * 110.48710 * 264.93263 * 14 13 12 16 16 C 1.53002 * 110.48812 * 142.28964 * 14 13 12 17 17 N 1.46497 * 109.46783 * 66.45292 * 16 14 13 18 18 C 1.34777 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21283 * 120.00116 * 359.97438 * 18 17 16 20 20 C 1.50709 * 119.99904 * 180.02562 * 18 17 16 21 21 C 1.53002 * 109.47133 * 179.97438 * 20 18 17 22 22 H 1.08996 * 110.13236 * 304.75858 * 21 20 18 23 23 O 1.43948 * 110.15288 * 66.45042 * 21 20 18 24 24 C 1.43944 * 104.94364 * 90.67211 * 23 21 20 25 25 C 1.51081 * 105.95756 * 28.45042 * 24 23 21 26 26 C 1.37969 * 132.69029 * 162.31267 * 25 24 23 27 27 C 1.38297 * 119.92131 * 180.02562 * 26 25 24 28 28 C 1.38266 * 120.03919 * 0.02562 * 27 26 25 29 29 C 1.38291 * 120.04025 * 359.96258 * 28 27 26 30 30 C 1.37970 * 119.92487 * 0.02662 * 29 28 27 31 31 C 1.54890 * 110.48831 * 158.77455 * 10 9 7 32 32 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 33 33 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 34 34 H 1.08995 * 110.02832 * 336.99442 * 12 10 9 35 35 H 1.09000 * 110.02889 * 98.42479 * 12 10 9 36 36 H 1.08999 * 110.03510 * 119.28672 * 13 12 10 37 37 H 1.09004 * 110.03096 * 240.66634 * 13 12 10 38 38 H 1.08992 * 109.47009 * 186.45883 * 16 14 13 39 39 H 1.09000 * 109.46687 * 306.45622 * 16 14 13 40 40 H 0.96998 * 120.00522 * 0.02562 * 17 16 14 41 41 H 1.08994 * 109.46598 * 299.99584 * 20 18 17 42 42 H 1.09001 * 109.47087 * 59.99462 * 20 18 17 43 43 H 1.09001 * 110.15002 * 147.56913 * 24 23 21 44 44 H 1.08998 * 110.15761 * 269.24951 * 24 23 21 45 45 H 1.08004 * 120.04397 * 359.97159 * 26 25 24 46 46 H 1.07995 * 119.98388 * 180.02562 * 27 26 25 47 47 H 1.08004 * 119.97800 * 179.97438 * 28 27 26 48 48 H 1.08002 * 120.04223 * 180.02562 * 29 28 27 49 49 H 1.09005 * 110.75626 * 274.93460 * 31 10 9 50 50 H 1.09001 * 110.75890 * 38.30394 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 1 3.5873 -3.2107 -0.6168 12 6 4.3051 -2.9894 1.4279 13 6 5.7079 -3.6193 1.4840 14 6 6.3181 -3.4622 0.0759 15 1 6.1516 -4.3631 -0.5147 16 6 7.8133 -3.1520 0.1718 17 7 8.5177 -4.3103 0.7269 18 6 9.8530 -4.2657 0.9039 19 8 10.4715 -3.2667 0.6032 20 6 10.5778 -5.4575 1.4744 21 6 12.0730 -5.1472 1.5704 22 1 12.4562 -4.8429 0.5965 23 8 12.3027 -4.1086 2.5403 24 6 12.5133 -4.8021 3.7839 25 6 13.0920 -6.1483 3.4160 26 6 13.7758 -7.1024 4.1411 27 6 14.1948 -8.2677 3.5253 28 6 13.9291 -8.4761 2.1845 29 6 13.2435 -7.5199 1.4578 30 6 12.8253 -6.3575 2.0721 31 6 5.5542 -2.2620 -0.5371 32 1 -0.4850 0.8401 0.0041 33 1 3.8647 -0.3622 -0.0031 34 1 4.2388 -2.1622 2.1346 35 1 3.5492 -3.7400 1.6590 36 1 6.3223 -3.0978 2.2179 37 1 5.6329 -4.6754 1.7431 38 1 8.2030 -2.9316 -0.8219 39 1 7.9645 -2.2895 0.8209 40 1 8.0231 -5.1094 0.9670 41 1 10.1877 -5.6784 2.4679 42 1 10.4269 -6.3197 0.8248 43 1 13.2156 -4.2493 4.4079 44 1 11.5661 -4.9297 4.3079 45 1 13.9845 -6.9391 5.1881 46 1 14.7297 -9.0153 4.0920 47 1 14.2571 -9.3863 1.7045 48 1 13.0356 -7.6829 0.4106 49 1 5.5788 -2.3042 -1.6261 50 1 5.9636 -1.3183 -0.1767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264488642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:59 Heat of formation + Delta-G solvation = -45.772762 kcal Electronic energy + Delta-G solvation = -28896.753725 eV Core-core repulsion = 24888.659479 eV Total energy + Delta-G solvation = -4008.094246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.39094 -39.73500 -38.26560 -37.67893 -35.02449 -33.43860 -32.84504 -31.76499 -31.16849 -30.58828 -29.11960 -27.68822 -26.85689 -24.86453 -23.83854 -22.67798 -22.02684 -21.60290 -20.66018 -19.94352 -19.27575 -17.60234 -17.49831 -17.13669 -16.92683 -16.30896 -16.15700 -15.84787 -15.37898 -15.19519 -14.77119 -14.55491 -14.18189 -14.16989 -13.71959 -13.60516 -13.47402 -13.18665 -13.06610 -12.85370 -12.67669 -12.45990 -12.34941 -12.21655 -12.00381 -11.72584 -11.40281 -11.32119 -10.89372 -10.85349 -10.63848 -10.60296 -10.43757 -10.40864 -10.26729 -9.99105 -9.79361 -9.57750 -9.41064 -9.14867 -9.06988 -8.90245 -7.25130 -5.76537 -3.11803 0.70472 0.81177 2.52654 2.95750 3.18420 3.38976 3.42413 3.46811 3.54827 3.72684 4.12433 4.36706 4.43555 4.51972 4.60079 4.66774 4.70019 4.81257 4.84209 4.89492 4.92516 4.95350 5.03368 5.03506 5.17613 5.34910 5.40381 5.45739 5.50057 5.52126 5.60337 5.65627 5.67689 5.84333 5.85174 5.89950 5.94054 5.96497 5.98353 6.08602 6.22782 6.27778 6.33940 6.35445 6.43498 6.47096 6.61084 6.80208 7.02452 7.36061 8.00642 8.11226 8.43208 9.21890 9.94748 10.14617 11.41825 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028029 B = 0.001641 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.710084 B =17059.993844 C =17262.137785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.746 5.746 10 C 0.182 3.818 11 H 0.060 0.940 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.103 4.103 15 H 0.079 0.921 16 C 0.128 3.872 17 N -0.729 5.729 18 C 0.513 3.487 19 O -0.528 6.528 20 C -0.156 4.156 21 C 0.139 3.861 22 H 0.112 0.888 23 O -0.333 6.333 24 C 0.081 3.919 25 C -0.126 4.126 26 C -0.096 4.096 27 C -0.114 4.114 28 C -0.117 4.117 29 C -0.090 4.090 30 C -0.126 4.126 31 C -0.123 4.123 32 H 0.259 0.741 33 H 0.361 0.639 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.067 0.933 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.296 -20.319 6.475 37.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.072 3.928 11 H 0.078 0.922 12 C -0.185 4.185 13 C -0.155 4.155 14 C -0.122 4.122 15 H 0.098 0.902 16 C 0.004 3.996 17 N -0.381 5.381 18 C 0.298 3.702 19 O -0.404 6.404 20 C -0.197 4.197 21 C 0.080 3.920 22 H 0.130 0.870 23 O -0.251 6.251 24 C 0.004 3.996 25 C -0.126 4.126 26 C -0.114 4.114 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.108 4.108 30 C -0.126 4.126 31 C -0.162 4.162 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.086 0.914 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 30.467 -19.374 6.194 36.633 hybrid contribution 0.180 0.486 0.324 0.612 sum 30.647 -18.888 6.518 36.585 Atomic orbital electron populations 1.69708 1.05115 1.25801 1.57607 1.24677 0.95237 0.97218 1.02052 0.86552 0.79252 0.84974 0.77788 1.21121 1.20256 1.21759 1.19090 0.80670 0.94680 1.42916 0.89248 1.42792 1.04002 1.02001 1.90009 1.21001 0.89747 0.89003 0.93071 0.92240 1.22880 0.94388 1.00224 1.00994 1.22199 0.97563 1.00089 0.95670 1.22185 0.92405 0.99778 0.97843 0.90243 1.21471 0.91046 0.88134 0.98906 1.46046 1.07468 1.18711 1.65901 1.20367 0.82258 0.89132 0.78423 1.90751 1.66602 1.33165 1.49858 1.22126 0.95797 0.98046 1.03698 1.21004 0.91728 0.84410 0.94819 0.87020 1.89325 1.91916 1.26960 1.16895 1.21845 1.00079 0.88995 0.88643 1.21132 0.99155 0.97400 0.94947 1.20436 0.97839 0.93143 0.99958 1.21177 0.99797 0.97100 0.95098 1.21168 0.98769 0.99127 0.94404 1.20456 0.97885 0.92361 1.00119 1.20993 0.99790 0.96558 0.95294 1.22749 0.96406 0.97001 1.00072 0.93095 0.80571 0.91548 0.92566 0.92236 0.92661 0.91562 0.91332 0.76671 0.88469 0.87719 0.88358 0.90571 0.85637 0.85412 0.85358 0.85542 0.91429 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.85 10.45 -15.06 -0.16 -7.00 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.51 4.96 -51.82 -0.26 -17.76 16 10 C 0.18 3.37 3.50 -66.27 -0.23 3.14 16 11 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 12 C -0.14 -2.39 6.54 -25.61 -0.17 -2.55 16 13 C -0.12 -1.44 6.05 -25.61 -0.15 -1.60 16 14 C -0.10 -1.19 2.93 -88.95 -0.26 -1.45 16 15 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 16 C 0.13 1.47 4.99 -4.04 -0.02 1.45 16 17 N -0.73 -6.98 5.39 -60.29 -0.33 -7.30 16 18 C 0.51 5.68 7.73 -10.98 -0.08 5.60 16 19 O -0.53 -8.22 15.52 -6.37 -0.10 -8.32 16 20 C -0.16 -1.19 5.38 -27.88 -0.15 -1.34 16 21 C 0.14 1.28 2.93 -27.70 -0.08 1.20 16 22 H 0.11 1.10 7.98 -51.93 -0.41 0.69 16 23 O -0.33 -3.83 10.78 -47.16 -0.51 -4.34 16 24 C 0.08 0.65 7.39 36.19 0.27 0.92 16 25 C -0.13 -0.97 6.32 -104.40 -0.66 -1.63 16 26 C -0.10 -0.59 10.04 -39.66 -0.40 -0.99 16 27 C -0.11 -0.61 10.05 -39.55 -0.40 -1.01 16 28 C -0.12 -0.63 10.05 -39.55 -0.40 -1.03 16 29 C -0.09 -0.57 10.04 -39.66 -0.40 -0.97 16 30 C -0.13 -0.99 5.63 -104.40 -0.59 -1.58 16 31 C -0.12 -1.83 5.92 -24.72 -0.15 -1.97 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.36 8.39 5.59 -40.82 -0.23 8.16 16 34 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.40 2.77 8.32 -40.82 -0.34 2.43 16 41 H 0.10 0.64 7.98 -51.93 -0.41 0.23 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 46 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 47 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 48 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 49 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -35.33 404.05 -11.30 -46.63 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.13 Total: 6.88 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -4.12 Total: -10.81 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.19 Total: -53.69 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.61 Total: -12.66 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.33 -11.30 -46.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264488642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.858 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds