Wall clock time and date at job start Wed Apr 1 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48505 * 109.47352 * 240.00381 * 3 2 1 5 5 H 1.48502 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47642 * 120.00110 * 3 2 1 7 7 C 1.38810 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00793 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00198 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.47222 * 324.99900 * 10 9 7 12 12 C 1.53000 * 109.47449 * 204.99613 * 10 9 7 13 13 N 1.46499 * 109.46840 * 54.99576 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.82414 * 84.11445 * 16 14 13 18 18 C 1.38236 * 120.00093 * 90.43064 * 17 16 14 19 19 C 1.38232 * 120.00152 * 179.79085 * 18 17 16 20 20 C 1.38240 * 119.99808 * 0.43568 * 19 18 17 21 21 C 1.38233 * 119.99991 * 359.81416 * 20 19 18 22 22 C 1.38227 * 120.00013 * 359.97438 * 21 20 19 23 23 C 1.54380 * 109.82952 * 205.00293 * 16 14 13 24 24 C 1.55299 * 102.25295 * 98.15616 * 23 16 14 25 25 C 1.54944 * 100.94538 * 34.13327 * 24 23 16 26 26 O 1.43236 * 109.82791 * 323.13445 * 16 14 13 27 27 C 1.53002 * 109.47348 * 84.99697 * 10 9 7 28 28 C 1.53001 * 117.49742 * 8.74568 * 27 10 9 29 29 C 1.53001 * 117.49801 * 300.08580 * 27 10 9 30 30 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00372 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47398 * 174.99902 * 12 10 9 33 33 H 1.09001 * 109.47194 * 295.00082 * 12 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 35 35 H 1.08004 * 119.99616 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.00339 * 180.26836 * 19 18 17 37 37 H 1.07998 * 119.99845 * 179.83727 * 20 19 18 38 38 H 1.07997 * 120.00023 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.00041 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.84521 * 216.34824 * 23 16 14 41 41 H 1.09004 * 110.84817 * 339.96130 * 23 16 14 42 42 H 1.09008 * 111.12464 * 152.05171 * 24 23 16 43 43 H 1.09001 * 111.12687 * 276.16793 * 24 23 16 44 44 H 1.09003 * 110.30856 * 82.47124 * 25 24 23 45 45 H 1.08996 * 110.31100 * 204.54161 * 25 24 23 46 46 H 1.09001 * 115.55234 * 154.41849 * 27 10 9 47 47 H 1.08996 * 117.50206 * 0.02562 * 28 27 10 48 48 H 1.09006 * 117.49807 * 145.02460 * 28 27 10 49 49 H 1.08996 * 117.50505 * 214.98026 * 29 27 10 50 50 H 1.09003 * 117.49537 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 1.1812 -4.7524 -0.6080 13 7 0.7355 -4.3363 -1.9401 14 6 -0.0538 -5.1485 -2.6708 15 8 -0.3947 -6.2239 -2.2258 16 6 -0.5118 -4.7207 -4.0414 17 6 0.5486 -5.0497 -5.0603 18 6 0.5329 -6.2729 -5.7040 19 6 1.5031 -6.5730 -6.6418 20 6 2.4942 -5.6532 -6.9295 21 6 2.5129 -4.4320 -6.2821 22 6 1.5402 -4.1303 -5.3475 23 6 -1.8275 -5.4428 -4.4029 24 6 -2.8973 -4.3716 -4.0567 25 6 -2.1401 -3.0704 -4.4234 26 8 -0.7748 -3.3127 -4.0482 27 6 2.4208 -4.0350 1.4391 28 6 1.8115 -3.1974 2.5652 29 6 3.2978 -3.0593 2.2264 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.7562 -5.6749 -0.6889 33 1 0.3132 -4.9200 0.0296 34 1 1.0085 -3.4764 -2.2963 35 1 -0.2391 -6.9931 -5.4762 36 1 1.4884 -7.5270 -7.1479 37 1 3.2537 -5.8887 -7.6603 38 1 3.2874 -3.7136 -6.5066 39 1 1.5550 -3.1762 -4.8414 40 1 -1.8554 -5.6901 -5.4641 41 1 -1.9606 -6.3357 -3.7919 42 1 -3.7890 -4.4938 -4.6717 43 1 -3.1482 -4.3953 -2.9962 44 1 -2.2103 -2.8809 -5.4945 45 1 -2.5439 -2.2271 -3.8633 46 1 2.5619 -5.0999 1.6237 47 1 1.1518 -2.3773 2.2821 48 1 1.5520 -3.7113 3.4909 49 1 4.0156 -3.4822 2.9292 50 1 3.6166 -2.1481 1.7200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265378485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:18 Heat of formation + Delta-G solvation = -12.553155 kcal Electronic energy + Delta-G solvation = -31410.964815 eV Core-core repulsion = 27404.311078 eV Total energy + Delta-G solvation = -4006.653736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.86657 -38.73521 -38.19439 -37.43637 -34.50623 -33.22702 -32.53219 -32.01505 -30.79486 -30.71598 -28.57728 -27.73284 -24.30684 -23.48037 -22.95880 -22.66765 -21.61613 -21.37079 -21.14483 -19.75074 -18.99166 -17.83906 -17.29864 -17.07544 -16.02502 -15.76932 -15.41038 -15.26158 -14.76724 -14.69781 -14.60450 -14.39702 -13.90828 -13.75765 -13.59065 -13.39544 -13.16838 -13.00543 -12.78411 -12.65056 -12.04279 -11.97313 -11.84769 -11.31646 -11.28558 -11.22566 -11.11925 -10.94409 -10.86410 -10.83322 -10.81737 -10.51359 -10.29368 -10.11928 -9.64772 -9.49025 -9.31347 -9.13823 -8.94340 -8.92908 -8.70387 -8.55290 -7.02433 -5.79322 -3.09087 1.23647 1.39127 2.87391 3.41427 3.46725 3.47561 3.49989 3.62297 3.82727 4.44121 4.52778 4.55544 4.66088 4.87238 4.92889 4.95094 5.04605 5.13628 5.16721 5.33411 5.40647 5.46730 5.51239 5.57104 5.61122 5.63728 5.69307 5.76732 5.79848 5.87293 5.90274 5.95940 6.00552 6.01771 6.08224 6.08903 6.11480 6.40514 6.41277 6.49058 6.50194 6.50922 6.67609 6.78371 6.88399 6.94655 6.98761 7.04918 7.30187 7.68422 8.00013 8.37405 8.57417 9.49910 10.03858 10.40369 11.41989 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.003683 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.122006 B = 7601.164960 C = 7970.369213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.117 3.883 13 N -0.693 5.693 14 C 0.521 3.479 15 O -0.551 6.551 16 C 0.135 3.865 17 C -0.091 4.091 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.087 4.087 23 C -0.138 4.138 24 C -0.156 4.156 25 C 0.052 3.948 26 O -0.352 6.352 27 C -0.178 4.178 28 C -0.162 4.162 29 C -0.175 4.175 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.416 0.584 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.119 0.881 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -11.372 -11.962 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.007 4.007 13 N -0.344 5.344 14 C 0.305 3.695 15 O -0.430 6.430 16 C 0.092 3.908 17 C -0.092 4.092 18 C -0.122 4.122 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.176 4.176 24 C -0.194 4.194 25 C -0.025 4.025 26 O -0.270 6.270 27 C -0.199 4.199 28 C -0.199 4.199 29 C -0.212 4.212 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.137 0.863 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.704 -11.784 -11.589 16.543 hybrid contribution 0.236 1.256 -0.049 1.279 sum -0.468 -10.528 -11.638 15.700 Atomic orbital electron populations 1.69649 1.04976 1.25697 1.57057 1.24676 0.95375 0.97410 1.02766 0.86371 0.78615 0.83979 0.77805 1.21356 1.21835 1.21340 1.19093 0.90797 0.83826 1.43313 0.91226 1.42435 1.05825 0.99380 1.88032 1.19976 0.94081 0.86130 0.91670 0.92595 1.21620 0.98780 0.97449 0.82894 1.45899 1.49328 1.21793 1.17357 1.20258 0.78675 0.84580 0.86002 1.90643 1.57848 1.22908 1.71620 1.20885 0.94852 0.83597 0.91497 1.19757 0.96677 0.95253 0.97517 1.21035 0.99154 0.95989 0.96065 1.21074 0.95269 0.99527 0.98514 1.21184 0.98469 0.94155 0.99776 1.21181 0.98821 0.97076 0.96949 1.21120 0.92983 0.99528 0.96878 1.23200 0.91319 1.00139 1.02907 1.23295 0.98589 0.94345 1.03135 1.23452 0.81028 0.98165 0.99816 1.88526 1.28924 1.19955 1.89638 1.23076 1.05992 0.95280 0.95585 1.22908 0.96699 1.03521 0.96821 1.22845 0.93474 1.01893 1.03005 0.93503 0.77884 0.91925 0.91686 0.74689 0.85699 0.86038 0.86192 0.85824 0.84954 0.89655 0.87855 0.89633 0.89960 0.92058 0.88819 0.89700 0.86318 0.91352 0.91075 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.02 8.15 -15.06 -0.12 -6.14 16 8 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 9 N -0.71 -16.16 3.08 -53.42 -0.16 -16.32 16 10 C 0.19 3.64 2.86 -67.93 -0.19 3.44 16 11 H 0.06 1.09 8.08 -51.92 -0.42 0.67 16 12 C 0.12 2.07 5.22 -4.04 -0.02 2.05 16 13 N -0.69 -12.39 5.30 -60.29 -0.32 -12.71 16 14 C 0.52 9.13 6.73 -10.98 -0.07 9.06 16 15 O -0.55 -10.71 15.56 5.56 0.09 -10.62 16 16 C 0.13 1.99 0.98 -92.20 -0.09 1.90 16 17 C -0.09 -1.27 4.80 -104.62 -0.50 -1.77 16 18 C -0.10 -1.27 8.75 -39.58 -0.35 -1.62 16 19 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.12 -1.44 10.05 -39.59 -0.40 -1.83 16 22 C -0.09 -1.19 9.36 -39.58 -0.37 -1.56 16 23 C -0.14 -1.70 4.98 -24.79 -0.12 -1.83 16 24 C -0.16 -1.78 7.15 -24.49 -0.18 -1.96 16 25 C 0.05 0.66 7.78 38.18 0.30 0.96 16 26 O -0.35 -5.54 9.13 -35.23 -0.32 -5.86 16 27 C -0.18 -3.16 5.71 -90.62 -0.52 -3.68 16 28 C -0.16 -3.08 9.74 -26.69 -0.26 -3.34 16 29 C -0.18 -3.17 9.87 -26.69 -0.26 -3.44 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 9.65 7.80 -40.82 -0.32 9.33 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.42 7.82 7.65 -40.82 -0.31 7.51 16 35 H 0.13 1.37 6.85 -52.48 -0.36 1.02 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.92 7.55 -52.48 -0.40 1.52 16 40 H 0.08 0.89 6.88 -51.93 -0.36 0.53 16 41 H 0.10 1.37 6.76 -51.93 -0.35 1.02 16 42 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 47 H 0.12 2.69 6.68 -51.93 -0.35 2.34 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.10 2.07 6.22 -51.93 -0.32 1.75 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -29.11 401.83 -10.77 -39.88 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -7.75 Total: 22.05 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -4.05 Total: -13.38 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.24 Total: -54.59 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.24 Total: -16.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.11 -10.77 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265378485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.323 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds