Wall clock time and date at job start Wed Apr 1 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48505 * 109.47352 * 240.00381 * 3 2 1 5 5 H 1.48502 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47642 * 120.00110 * 3 2 1 7 7 C 1.38810 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00793 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00198 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.47222 * 324.99900 * 10 9 7 12 12 C 1.53000 * 109.47449 * 204.99613 * 10 9 7 13 13 N 1.46499 * 109.46840 * 54.99576 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21278 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99944 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.82414 * 84.11445 * 16 14 13 18 18 C 1.38236 * 120.00093 * 90.43064 * 17 16 14 19 19 C 1.38232 * 120.00152 * 179.79085 * 18 17 16 20 20 C 1.38240 * 119.99808 * 0.43568 * 19 18 17 21 21 C 1.38233 * 119.99991 * 359.81416 * 20 19 18 22 22 C 1.38227 * 120.00013 * 359.97438 * 21 20 19 23 23 C 1.54380 * 109.82952 * 205.00293 * 16 14 13 24 24 C 1.55299 * 102.25295 * 98.15616 * 23 16 14 25 25 C 1.54944 * 100.94538 * 34.13327 * 24 23 16 26 26 O 1.43236 * 109.82791 * 323.13445 * 16 14 13 27 27 C 1.53002 * 109.47348 * 84.99697 * 10 9 7 28 28 C 1.53001 * 117.49742 * 8.74568 * 27 10 9 29 29 C 1.53001 * 117.49801 * 300.08580 * 27 10 9 30 30 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00372 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47398 * 174.99902 * 12 10 9 33 33 H 1.09001 * 109.47194 * 295.00082 * 12 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 35 35 H 1.08004 * 119.99616 * 359.97438 * 18 17 16 36 36 H 1.08002 * 120.00339 * 180.26836 * 19 18 17 37 37 H 1.07998 * 119.99845 * 179.83727 * 20 19 18 38 38 H 1.07997 * 120.00023 * 179.97438 * 21 20 19 39 39 H 1.08007 * 120.00041 * 179.97438 * 22 21 20 40 40 H 1.09003 * 110.84521 * 216.34824 * 23 16 14 41 41 H 1.09004 * 110.84817 * 339.96130 * 23 16 14 42 42 H 1.09008 * 111.12464 * 152.05171 * 24 23 16 43 43 H 1.09001 * 111.12687 * 276.16793 * 24 23 16 44 44 H 1.09003 * 110.30856 * 82.47124 * 25 24 23 45 45 H 1.08996 * 110.31100 * 204.54161 * 25 24 23 46 46 H 1.09001 * 115.55234 * 154.41849 * 27 10 9 47 47 H 1.08996 * 117.50206 * 0.02562 * 28 27 10 48 48 H 1.09006 * 117.49807 * 145.02460 * 28 27 10 49 49 H 1.08996 * 117.50505 * 214.98026 * 29 27 10 50 50 H 1.09003 * 117.49537 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 1.1812 -4.7524 -0.6080 13 7 0.7355 -4.3363 -1.9401 14 6 -0.0538 -5.1485 -2.6708 15 8 -0.3947 -6.2239 -2.2258 16 6 -0.5118 -4.7207 -4.0414 17 6 0.5486 -5.0497 -5.0603 18 6 0.5329 -6.2729 -5.7040 19 6 1.5031 -6.5730 -6.6418 20 6 2.4942 -5.6532 -6.9295 21 6 2.5129 -4.4320 -6.2821 22 6 1.5402 -4.1303 -5.3475 23 6 -1.8275 -5.4428 -4.4029 24 6 -2.8973 -4.3716 -4.0567 25 6 -2.1401 -3.0704 -4.4234 26 8 -0.7748 -3.3127 -4.0482 27 6 2.4208 -4.0350 1.4391 28 6 1.8115 -3.1974 2.5652 29 6 3.2978 -3.0593 2.2264 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.7562 -5.6749 -0.6889 33 1 0.3132 -4.9200 0.0296 34 1 1.0085 -3.4764 -2.2963 35 1 -0.2391 -6.9931 -5.4762 36 1 1.4884 -7.5270 -7.1479 37 1 3.2537 -5.8887 -7.6603 38 1 3.2874 -3.7136 -6.5066 39 1 1.5550 -3.1762 -4.8414 40 1 -1.8554 -5.6901 -5.4641 41 1 -1.9606 -6.3357 -3.7919 42 1 -3.7890 -4.4938 -4.6717 43 1 -3.1482 -4.3953 -2.9962 44 1 -2.2103 -2.8809 -5.4945 45 1 -2.5439 -2.2271 -3.8633 46 1 2.5619 -5.0999 1.6237 47 1 1.1518 -2.3773 2.2821 48 1 1.5520 -3.7113 3.4909 49 1 4.0156 -3.4822 2.9292 50 1 3.6166 -2.1481 1.7200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265378485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:17 Heat of formation + Delta-G solvation = -28.613012 kcal Electronic energy + Delta-G solvation = -31411.661222 eV Core-core repulsion = 27404.311078 eV Total energy + Delta-G solvation = -4007.350144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.01579 -39.96463 -39.32636 -38.91521 -35.97963 -35.07107 -33.57615 -33.12018 -32.39929 -31.69605 -30.02998 -28.99588 -25.83078 -25.03615 -24.10334 -23.77339 -23.05276 -22.49966 -22.25084 -21.11428 -20.42772 -19.34071 -18.79371 -18.28319 -17.25223 -16.92555 -16.72456 -16.58991 -16.30841 -16.02955 -15.84875 -15.67231 -15.27522 -15.13861 -14.89471 -14.58779 -14.43618 -14.35524 -14.08364 -13.71396 -13.56615 -13.00320 -12.94283 -12.84007 -12.78476 -12.66300 -12.60984 -12.28501 -12.23242 -12.13877 -11.97102 -11.90047 -11.79490 -11.59352 -11.47418 -11.02581 -10.88558 -10.63999 -10.46700 -10.04042 -9.83200 -9.68738 -8.97527 -7.86057 -5.13652 0.31113 0.48632 1.49801 1.50041 1.51691 1.55475 2.21340 2.56492 2.59287 2.86247 3.12853 3.43465 3.48232 3.55016 3.73154 3.86366 3.97885 4.01325 4.07580 4.11269 4.17559 4.26675 4.27098 4.31879 4.35945 4.47499 4.57345 4.58777 4.62624 4.67151 4.70089 4.77092 4.83681 4.91157 4.95366 4.96158 5.02360 5.11918 5.15217 5.16392 5.23556 5.40984 5.50881 5.54174 5.56256 5.60700 5.66410 5.68607 5.89137 6.07545 6.32881 6.55341 7.14464 7.41483 8.11621 8.37818 9.36033 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010172 B = 0.003683 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.122006 B = 7601.164960 C = 7970.369213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.283 1.283 7 C -0.220 4.220 8 H 0.074 0.926 9 N -0.718 5.718 10 C 0.193 3.807 11 H 0.056 0.944 12 C 0.125 3.875 13 N -0.697 5.697 14 C 0.516 3.484 15 O -0.573 6.573 16 C 0.136 3.864 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.132 4.132 24 C -0.149 4.149 25 C 0.043 3.957 26 O -0.378 6.378 27 C -0.169 4.169 28 C -0.171 4.171 29 C -0.169 4.169 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.102 0.898 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.569 -13.360 -13.399 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.352 4.352 8 H 0.092 0.908 9 N -0.357 5.357 10 C 0.084 3.916 11 H 0.074 0.926 12 C 0.001 3.999 13 N -0.347 5.347 14 C 0.301 3.699 15 O -0.454 6.454 16 C 0.093 3.907 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.126 4.126 23 C -0.170 4.170 24 C -0.186 4.186 25 C -0.032 4.032 26 O -0.297 6.297 27 C -0.190 4.190 28 C -0.208 4.208 29 C -0.206 4.206 30 H 0.055 0.945 31 H 0.206 0.794 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.133 0.867 47 H 0.095 0.905 48 H 0.110 0.890 49 H 0.121 0.879 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.638 -13.800 -13.025 18.986 hybrid contribution -0.105 1.799 0.384 1.843 sum 0.533 -12.000 -12.640 17.438 Atomic orbital electron populations 1.69797 1.06256 1.25493 1.59645 1.25282 0.95977 1.00108 1.04240 0.85480 0.77307 0.80674 0.77878 1.20791 1.22901 1.20947 1.19342 0.90962 0.84601 1.40293 0.90831 1.42463 1.05169 1.00180 1.87934 1.20093 0.93755 0.84923 0.92822 0.92649 1.21522 0.98153 0.97459 0.82756 1.45955 1.49661 1.21622 1.17427 1.20862 0.77923 0.84106 0.86997 1.90614 1.58570 1.23769 1.72476 1.20895 0.96361 0.83422 0.89999 1.19750 0.96722 0.96252 0.98065 1.21241 1.00092 0.95400 0.96366 1.21462 0.94278 1.00669 0.97602 1.21562 0.98854 0.93228 0.99550 1.21416 0.98569 0.98207 0.96477 1.21082 0.94277 0.99088 0.98160 1.23216 0.90151 0.99522 1.04113 1.23281 0.99518 0.93203 1.02644 1.23635 0.80065 0.98593 1.00935 1.88500 1.30510 1.20792 1.89937 1.23040 1.05262 0.96774 0.93954 1.22767 0.96737 1.03009 0.98334 1.22836 0.93407 1.01080 1.03237 0.94470 0.79441 0.90324 0.92914 0.75378 0.84713 0.83021 0.83158 0.84430 0.87040 0.87244 0.88822 0.86269 0.91833 0.89936 0.89752 0.86689 0.90455 0.89013 0.87945 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.69 13.06 21.65 0.28 -56.41 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.96 45.17 29.55 68.60 2.03 47.20 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.22 -11.29 8.15 84.03 0.69 -10.61 16 8 H 0.07 3.68 6.91 -2.91 -0.02 3.66 16 9 N -0.72 -33.31 3.08 -322.94 -0.99 -34.30 16 10 C 0.19 7.30 2.86 44.99 0.13 7.43 16 11 H 0.06 2.12 8.08 -2.38 -0.02 2.11 16 12 C 0.13 4.46 5.22 86.38 0.45 4.91 16 13 N -0.70 -25.66 5.30 -463.05 -2.46 -28.11 16 14 C 0.52 18.46 6.73 87.66 0.59 19.05 16 15 O -0.57 -22.52 15.56 -3.02 -0.05 -22.56 16 16 C 0.14 4.06 0.98 -11.82 -0.01 4.05 16 17 C -0.11 -2.93 4.80 -19.87 -0.10 -3.02 16 18 C -0.11 -2.55 8.75 22.27 0.19 -2.36 16 19 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 20 C -0.11 -2.07 10.05 22.27 0.22 -1.85 16 21 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 22 C -0.11 -2.98 9.36 22.27 0.21 -2.77 16 23 C -0.13 -3.17 4.98 31.85 0.16 -3.01 16 24 C -0.15 -3.33 7.15 32.05 0.23 -3.10 16 25 C 0.04 1.12 7.78 72.65 0.56 1.68 16 26 O -0.38 -12.35 9.13 -148.98 -1.36 -13.71 16 27 C -0.17 -5.75 5.71 -10.79 -0.06 -5.82 16 28 C -0.17 -6.38 9.74 30.62 0.30 -6.08 16 29 C -0.17 -5.83 9.87 30.62 0.30 -5.53 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.37 19.45 7.80 -92.71 -0.72 18.73 16 32 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.41 16.16 7.65 -92.71 -0.71 15.45 16 35 H 0.14 2.69 6.85 -2.91 -0.02 2.67 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.11 3.45 7.55 -2.91 -0.02 3.42 16 40 H 0.11 2.06 6.88 -2.39 -0.02 2.04 16 41 H 0.09 2.44 6.76 -2.39 -0.02 2.43 16 42 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.12 3.30 8.11 -2.39 -0.02 3.28 16 47 H 0.08 3.59 6.68 -2.39 -0.02 3.58 16 48 H 0.09 2.97 8.14 -2.38 -0.02 2.95 16 49 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 50 H 0.08 3.10 6.22 -2.39 -0.01 3.08 16 Total: -1.00 -64.86 401.83 1.76 -63.09 By element: Atomic # 1 Polarization: 59.92 SS G_CDS: -0.47 Total: 59.45 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: 4.78 Total: -14.65 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -3.17 Total: -118.82 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.41 Total: -36.28 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.86 1.76 -63.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265378485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.481 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds