Wall clock time and date at job start Wed Apr 1 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 N 1.46497 * 109.47303 * 181.33162 * 14 12 11 16 16 C 1.34777 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21272 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99685 * 180.02562 * 16 15 14 19 19 O 1.42900 * 109.47023 * 180.02562 * 18 16 15 20 20 C 1.42901 * 114.00216 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47086 * 179.97438 * 20 19 18 22 22 C 1.32565 * 119.99617 * 135.00239 * 21 20 19 23 23 C 1.47809 * 119.99950 * 180.02562 * 22 21 20 24 24 C 1.39537 * 120.14157 * 359.72124 * 23 22 21 25 25 C 1.37971 * 119.85573 * 179.72282 * 24 23 22 26 26 C 1.38346 * 120.14382 * 0.53580 * 25 24 23 27 27 C 1.38347 * 120.28231 * 359.76006 * 26 25 24 28 28 C 1.37966 * 120.14379 * 359.96316 * 27 26 25 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 36 36 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 37 37 H 0.97000 * 120.00003 * 359.97438 * 15 14 12 38 38 H 1.09005 * 109.46899 * 299.99407 * 18 16 15 39 39 H 1.08992 * 109.47732 * 59.99436 * 18 16 15 40 40 H 1.08992 * 109.47485 * 299.99867 * 20 19 18 41 41 H 1.09004 * 109.47000 * 59.99934 * 20 19 18 42 42 H 1.07998 * 120.00012 * 314.99821 * 21 20 19 43 43 H 1.08002 * 120.00045 * 0.02562 * 22 21 20 44 44 H 1.08005 * 120.06849 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.93081 * 180.27917 * 25 24 23 46 46 H 1.07994 * 119.85681 * 179.74554 * 26 25 24 47 47 H 1.08004 * 119.92631 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.07137 * 180.02562 * 28 27 26 49 49 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 50 50 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 7 2.2943 -6.6328 -0.6914 16 6 2.6702 -7.8962 -0.4104 17 8 1.9720 -8.5940 0.2940 18 6 3.9586 -8.4412 -0.9708 19 8 4.1344 -9.7907 -0.5348 20 6 5.3326 -10.4048 -1.0136 21 6 5.4150 -11.8174 -0.4950 22 6 5.7599 -12.8038 -1.3107 23 6 5.8402 -14.1894 -0.8022 24 6 5.5593 -14.4616 0.5372 25 6 5.6304 -15.7579 1.0042 26 6 5.9902 -16.7852 0.1503 27 6 6.2759 -16.5211 -1.1773 28 6 6.2029 -15.2300 -1.6581 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5575 -2.0898 0.9015 33 1 -1.2974 -4.2573 -0.6785 34 1 -0.6320 -4.4259 0.9776 35 1 1.0793 -6.1306 0.9428 36 1 0.2074 -6.7095 -0.4969 37 1 2.8529 -6.0744 -1.2546 38 1 3.9216 -8.4136 -2.0598 39 1 4.7930 -7.8341 -0.6201 40 1 5.3241 -10.4175 -2.1034 41 1 6.1959 -9.8387 -0.6636 42 1 5.1932 -12.0260 0.5412 43 1 5.9822 -12.5951 -2.3468 44 1 5.2827 -13.6598 1.2059 45 1 5.4089 -15.9706 2.0396 46 1 6.0485 -17.7976 0.5218 47 1 6.5566 -17.3274 -1.8388 48 1 6.4258 -15.0252 -2.6949 49 1 2.1668 -4.0420 1.0178 50 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266519816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:42 Heat of formation + Delta-G solvation = -17.028143 kcal Electronic energy + Delta-G solvation = -27541.669125 eV Core-core repulsion = 23534.821339 eV Total energy + Delta-G solvation = -4006.847786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.85697 -39.57626 -38.15163 -37.45456 -34.96676 -34.61872 -32.54576 -31.38777 -30.94965 -30.02936 -28.85659 -27.66862 -25.97106 -25.22133 -23.38787 -23.32436 -22.32615 -20.84151 -19.98748 -19.92054 -19.59420 -17.75596 -17.28188 -16.95095 -16.72438 -16.57865 -15.85595 -15.62358 -15.29802 -15.04780 -14.84276 -14.61037 -14.24313 -13.97582 -13.76418 -13.63605 -13.38494 -13.25477 -13.13520 -12.60372 -12.52403 -12.35281 -11.98547 -11.78816 -11.73777 -11.48785 -11.40001 -11.22893 -10.92420 -10.79703 -10.71576 -10.43027 -10.18562 -10.04190 -10.02704 -9.89286 -9.69518 -9.66119 -9.35174 -8.99449 -8.61910 -8.52992 -6.85180 -5.72971 -3.06595 0.48263 1.01184 2.00251 2.59968 2.78099 3.38804 3.43110 3.44586 3.52194 3.78211 4.35928 4.37607 4.47593 4.56885 4.62447 4.65640 4.76266 4.84029 4.87276 4.93093 5.00285 5.03092 5.09560 5.13122 5.20130 5.22833 5.40259 5.52611 5.55169 5.62213 5.66571 5.86432 5.87900 5.99448 6.03326 6.04309 6.11847 6.17183 6.32647 6.36687 6.40951 6.46911 6.52117 6.58320 6.64468 6.73912 6.89139 7.50735 7.53445 7.61327 7.80498 8.21948 8.24021 9.19835 9.80566 10.47025 11.38934 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.001284 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.262111 B =21802.347317 C =22316.643487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.135 3.865 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.524 6.524 18 C 0.043 3.957 19 O -0.359 6.359 20 C 0.089 3.911 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.110 4.110 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.019 0.981 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -29.344 -4.615 32.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.399 6.399 18 C -0.037 4.037 19 O -0.277 6.277 20 C 0.013 3.987 21 C -0.151 4.151 22 C -0.131 4.131 23 C -0.054 4.054 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.128 4.128 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.237 0.763 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.037 0.963 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.942 -29.704 -3.970 32.260 hybrid contribution 0.926 1.359 -0.459 1.707 sum 12.868 -28.346 -4.429 31.443 Atomic orbital electron populations 1.69949 1.04895 1.25180 1.56899 1.24800 0.95710 0.97665 1.02203 0.86203 0.78463 0.83232 0.77872 1.21186 1.21564 1.21181 1.19003 0.90363 0.82455 1.44069 0.90539 1.44527 1.01706 0.99818 1.87225 1.21194 0.84295 0.88174 1.01118 1.22854 0.95401 0.99350 0.99743 1.22624 0.98678 0.91952 1.00538 0.90184 1.21404 0.84826 0.93781 0.98862 1.45954 1.25200 1.13350 1.53162 1.20159 0.86966 0.81972 0.81330 1.90728 1.54372 1.57936 1.36912 1.22232 0.96724 0.85061 0.99640 1.88045 1.41165 1.24776 1.73708 1.21501 0.87718 0.91686 0.97820 1.23100 0.98558 0.92861 1.00585 1.21593 1.01454 0.90795 0.99243 1.19027 0.99692 0.93121 0.93605 1.21402 0.99540 0.97124 0.95057 1.21128 0.99713 0.92782 0.99970 1.21242 0.99611 0.99245 0.93900 1.21105 1.00269 0.96670 0.95827 1.21274 0.99601 0.92452 0.99477 1.21560 0.93919 0.86207 0.96741 0.93678 0.93527 0.93877 0.91950 0.92163 0.91274 0.91596 0.76339 0.90164 0.89990 0.92323 0.91654 0.85858 0.86107 0.85528 0.85845 0.86077 0.85942 0.85817 0.96326 0.94710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.34 55.49 0.57 -26.34 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.61 -15.19 3.40 -169.85 -0.58 -15.76 16 10 C 0.18 4.22 5.38 -2.92 -0.02 4.20 16 11 C -0.13 -2.42 6.42 -24.90 -0.16 -2.58 16 12 C -0.12 -1.90 3.10 -88.47 -0.27 -2.18 16 13 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 14 C 0.13 1.91 5.13 -4.04 -0.02 1.89 16 15 N -0.72 -8.80 5.41 -60.30 -0.33 -9.13 16 16 C 0.51 6.86 7.91 -10.98 -0.09 6.77 16 17 O -0.52 -9.48 16.50 -14.34 -0.24 -9.72 16 18 C 0.04 0.41 6.42 36.01 0.23 0.64 16 19 O -0.36 -4.18 9.86 -55.14 -0.54 -4.72 16 20 C 0.09 0.70 6.36 36.01 0.23 0.93 16 21 C -0.13 -1.09 9.31 -36.21 -0.34 -1.43 16 22 C -0.11 -0.84 9.51 -37.58 -0.36 -1.20 16 23 C -0.05 -0.44 5.87 -105.01 -0.62 -1.06 16 24 C -0.11 -0.91 9.40 -39.19 -0.37 -1.28 16 25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 26 C -0.12 -0.80 10.04 -39.50 -0.40 -1.20 16 27 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 28 C -0.11 -0.78 9.79 -39.20 -0.38 -1.16 16 29 C 0.14 2.77 6.40 -2.53 -0.02 2.75 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 1.23 7.39 -51.93 -0.38 0.84 16 32 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 3.94 8.34 -40.82 -0.34 3.60 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.36 7.88 -51.93 -0.41 -0.05 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.12 1.05 6.04 -52.49 -0.32 0.73 16 43 H 0.12 0.69 7.92 -52.49 -0.42 0.27 16 44 H 0.13 0.92 6.17 -52.48 -0.32 0.59 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 48 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 49 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 50 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 414.00 15.07 6.24 6.24 Total: -1.00 -34.92 414.00 -11.55 -46.46 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.03 Total: 0.26 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.62 Total: -4.12 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.33 Total: -51.24 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.78 Total: -14.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.92 -11.55 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.436 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds