Wall clock time and date at job start Wed Apr 1 2020 03:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 N 1.46497 * 109.47303 * 181.33162 * 14 12 11 16 16 C 1.34777 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21272 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99685 * 180.02562 * 16 15 14 19 19 O 1.42900 * 109.47023 * 180.02562 * 18 16 15 20 20 C 1.42901 * 114.00216 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47086 * 179.97438 * 20 19 18 22 22 C 1.32565 * 119.99617 * 135.00239 * 21 20 19 23 23 C 1.47809 * 119.99950 * 180.02562 * 22 21 20 24 24 C 1.39537 * 120.14157 * 359.72124 * 23 22 21 25 25 C 1.37971 * 119.85573 * 179.72282 * 24 23 22 26 26 C 1.38346 * 120.14382 * 0.53580 * 25 24 23 27 27 C 1.38347 * 120.28231 * 359.76006 * 26 25 24 28 28 C 1.37966 * 120.14379 * 359.96316 * 27 26 25 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 36 36 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 37 37 H 0.97000 * 120.00003 * 359.97438 * 15 14 12 38 38 H 1.09005 * 109.46899 * 299.99407 * 18 16 15 39 39 H 1.08992 * 109.47732 * 59.99436 * 18 16 15 40 40 H 1.08992 * 109.47485 * 299.99867 * 20 19 18 41 41 H 1.09004 * 109.47000 * 59.99934 * 20 19 18 42 42 H 1.07998 * 120.00012 * 314.99821 * 21 20 19 43 43 H 1.08002 * 120.00045 * 0.02562 * 22 21 20 44 44 H 1.08005 * 120.06849 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.93081 * 180.27917 * 25 24 23 46 46 H 1.07994 * 119.85681 * 179.74554 * 26 25 24 47 47 H 1.08004 * 119.92631 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.07137 * 180.02562 * 28 27 26 49 49 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 50 50 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 7 2.2943 -6.6328 -0.6914 16 6 2.6702 -7.8962 -0.4104 17 8 1.9720 -8.5940 0.2940 18 6 3.9586 -8.4412 -0.9708 19 8 4.1344 -9.7907 -0.5348 20 6 5.3326 -10.4048 -1.0136 21 6 5.4150 -11.8174 -0.4950 22 6 5.7599 -12.8038 -1.3107 23 6 5.8402 -14.1894 -0.8022 24 6 5.5593 -14.4616 0.5372 25 6 5.6304 -15.7579 1.0042 26 6 5.9902 -16.7852 0.1503 27 6 6.2759 -16.5211 -1.1773 28 6 6.2029 -15.2300 -1.6581 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5575 -2.0898 0.9015 33 1 -1.2974 -4.2573 -0.6785 34 1 -0.6320 -4.4259 0.9776 35 1 1.0793 -6.1306 0.9428 36 1 0.2074 -6.7095 -0.4969 37 1 2.8529 -6.0744 -1.2546 38 1 3.9216 -8.4136 -2.0598 39 1 4.7930 -7.8341 -0.6201 40 1 5.3241 -10.4175 -2.1034 41 1 6.1959 -9.8387 -0.6636 42 1 5.1932 -12.0260 0.5412 43 1 5.9822 -12.5951 -2.3468 44 1 5.2827 -13.6598 1.2059 45 1 5.4089 -15.9706 2.0396 46 1 6.0485 -17.7976 0.5218 47 1 6.5566 -17.3274 -1.8388 48 1 6.4258 -15.0252 -2.6949 49 1 2.1668 -4.0420 1.0178 50 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266519816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:41 Heat of formation + Delta-G solvation = -37.567732 kcal Electronic energy + Delta-G solvation = -27542.559788 eV Core-core repulsion = 23534.821339 eV Total energy + Delta-G solvation = -4007.738450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.88359 -40.09891 -39.35346 -38.58285 -36.02133 -35.49800 -34.31085 -31.92692 -31.82912 -31.36674 -30.23719 -28.80958 -27.17332 -26.38947 -24.88663 -23.84850 -22.84428 -22.18759 -21.52092 -21.15264 -20.32890 -18.88227 -18.34486 -18.02930 -17.71958 -17.33045 -16.85962 -16.62565 -16.39484 -16.17946 -15.84869 -15.66241 -15.53000 -15.09062 -14.75059 -14.52607 -14.23486 -13.99844 -13.95138 -13.88157 -13.80434 -13.46611 -13.27345 -13.13999 -12.97013 -12.76429 -12.59356 -12.33493 -12.06147 -11.98814 -11.89874 -11.82084 -11.73928 -11.52875 -11.44578 -11.28331 -10.83454 -10.68796 -10.66342 -10.08784 -9.86886 -9.07076 -8.88326 -7.83684 -5.19052 -0.05848 0.49430 1.44336 1.46977 1.50135 1.56392 1.60265 1.93787 2.50985 2.96521 3.09184 3.34966 3.61809 3.69778 3.83992 3.87194 3.90113 4.04292 4.04597 4.10325 4.19463 4.22881 4.28422 4.31433 4.41836 4.46037 4.48074 4.54506 4.62481 4.63170 4.69147 4.72553 4.82512 4.93668 5.06231 5.07391 5.09373 5.13517 5.34943 5.36155 5.45752 5.46942 5.47899 5.61132 5.63276 5.68371 5.78774 5.83787 6.07673 6.11356 6.21149 6.58040 7.11242 7.24698 7.79453 8.44478 9.27026 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029583 B = 0.001284 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.262111 B =21802.347317 C =22316.643487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.093 0.907 14 C 0.146 3.854 15 N -0.713 5.713 16 C 0.508 3.492 17 O -0.579 6.579 18 C 0.047 3.953 19 O -0.396 6.396 20 C 0.088 3.912 21 C -0.152 4.152 22 C -0.106 4.106 23 C -0.076 4.076 24 C -0.133 4.133 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.118 4.118 29 C 0.138 3.862 30 H 0.246 0.754 31 H 0.013 0.987 32 H 0.002 0.998 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.142 0.858 49 H 0.016 0.984 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.711 -30.840 -6.322 34.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.111 0.889 14 C 0.021 3.979 15 N -0.367 5.367 16 C 0.295 3.705 17 O -0.458 6.458 18 C -0.032 4.032 19 O -0.315 6.315 20 C 0.013 3.987 21 C -0.170 4.170 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.151 4.151 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.135 4.135 29 C 0.013 3.987 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.020 0.980 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.159 0.841 47 H 0.163 0.837 48 H 0.160 0.840 49 H 0.034 0.966 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.051 -31.213 -5.701 34.701 hybrid contribution 0.322 1.740 0.101 1.773 sum 14.373 -29.473 -5.599 33.265 Atomic orbital electron populations 1.70184 1.06384 1.25290 1.58361 1.25658 0.96568 1.01087 1.02716 0.85161 0.77127 0.78823 0.78278 1.19944 1.22272 1.20489 1.19459 0.91096 0.83738 1.42908 0.89694 1.44858 1.02418 1.01268 1.87030 1.20960 0.83917 0.91773 0.97607 1.22718 0.97318 0.95000 1.01207 1.22421 0.95941 0.92189 1.00878 0.88878 1.21132 0.86203 0.92398 0.98134 1.45818 1.24600 1.13391 1.52841 1.20921 0.87784 0.81557 0.80282 1.90707 1.56321 1.59299 1.39454 1.22340 0.95004 0.84625 1.01274 1.87997 1.42990 1.25822 1.74729 1.21658 0.86951 0.91100 0.98975 1.23140 0.99818 0.93750 1.00287 1.21778 1.00396 0.90263 0.99986 1.19276 1.00500 0.93937 0.93890 1.21570 1.00358 0.97666 0.95520 1.21383 0.99844 0.92728 1.00922 1.21570 0.98910 1.00066 0.94055 1.21454 0.99666 0.97181 0.96204 1.21573 0.99162 0.92490 1.00309 1.21752 0.95459 0.84323 0.97195 0.94492 0.96828 0.97957 0.89623 0.91288 0.92587 0.90945 0.74623 0.86819 0.87212 0.90205 0.90075 0.87261 0.84117 0.85835 0.84639 0.84071 0.83717 0.83977 0.96583 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 10.34 21.65 0.22 -57.22 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 3 Si 0.98 45.26 29.55 68.60 2.03 47.28 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -31.60 3.40 -691.29 -2.35 -33.95 16 10 C 0.18 8.92 5.38 86.68 0.47 9.39 16 11 C -0.12 -4.32 6.42 31.78 0.20 -4.12 16 12 C -0.09 -2.85 3.10 -9.40 -0.03 -2.88 16 13 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 14 C 0.15 3.82 5.13 86.38 0.44 4.26 16 15 N -0.71 -15.48 5.41 -463.08 -2.50 -17.99 16 16 C 0.51 12.67 7.91 87.66 0.69 13.36 16 17 O -0.58 -20.70 16.50 16.03 0.26 -20.44 16 18 C 0.05 0.75 6.42 71.24 0.46 1.21 16 19 O -0.40 -8.62 9.86 -129.94 -1.28 -9.91 16 20 C 0.09 1.21 6.36 71.24 0.45 1.67 16 21 C -0.15 -2.42 9.31 24.54 0.23 -2.19 16 22 C -0.11 -1.48 9.51 23.65 0.22 -1.25 16 23 C -0.08 -1.20 5.87 -20.12 -0.12 -1.32 16 24 C -0.13 -2.21 9.40 22.52 0.21 -2.00 16 25 C -0.13 -1.85 10.03 22.23 0.22 -1.62 16 26 C -0.13 -1.53 10.04 22.32 0.22 -1.31 16 27 C -0.13 -1.45 10.03 22.23 0.22 -1.22 16 28 C -0.12 -1.51 9.79 22.52 0.22 -1.29 16 29 C 0.14 5.16 6.40 86.86 0.56 5.71 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.01 0.74 7.39 -2.38 -0.02 0.72 16 32 H 0.00 0.12 7.52 -2.39 -0.02 0.10 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 35 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.42 6.69 8.34 -92.71 -0.77 5.91 16 38 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 0.73 7.88 -2.39 -0.02 0.71 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.11 1.98 6.04 -2.91 -0.02 1.96 16 43 H 0.14 1.29 7.92 -2.91 -0.02 1.26 16 44 H 0.12 1.97 6.17 -2.91 -0.02 1.96 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 47 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 48 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 49 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 50 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -79.04 414.00 2.54 -76.49 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.15 Total: 15.20 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.01 Total: 0.53 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.63 Total: -109.16 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.02 Total: -30.34 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -79.04 2.54 -76.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.927 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds