Wall clock time and date at job start Wed Apr 1 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48502 * 109.47292 * 239.99878 * 3 2 1 5 5 H 1.48503 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47454 * 119.99739 * 3 2 1 7 7 C 1.38811 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64751 * 0.02661 * 9 7 2 11 11 C 1.54332 * 107.40112 * 181.10129 * 10 9 7 12 12 C 1.55154 * 102.93969 * 22.11760 * 11 10 9 13 13 H 1.08999 * 111.00200 * 82.61452 * 12 11 10 14 14 C 1.52998 * 110.99913 * 206.42250 * 12 11 10 15 15 N 1.46504 * 109.47141 * 185.00321 * 14 12 11 16 16 C 1.34777 * 120.00174 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99718 * 179.97438 * 16 15 14 19 19 O 1.42893 * 109.46754 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00292 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47564 * 180.02562 * 20 19 18 22 22 C 1.32570 * 119.99926 * 136.24732 * 21 20 19 23 23 C 1.47809 * 120.00149 * 8.02540 * 22 21 20 24 24 C 1.39531 * 120.14503 * 215.11511 * 23 22 21 25 25 C 1.37973 * 119.85769 * 179.72291 * 24 23 22 26 26 C 1.38346 * 120.14097 * 0.53426 * 25 24 23 27 27 C 1.38338 * 120.28406 * 359.76424 * 26 25 24 28 28 C 1.37974 * 120.14743 * 359.95397 * 27 26 25 29 29 C 1.47747 * 125.82288 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99783 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.87999 * 61.60684 * 10 9 7 32 32 H 1.09003 * 109.88511 * 300.59528 * 10 9 7 33 33 H 1.09001 * 110.71770 * 140.48184 * 11 10 9 34 34 H 1.09000 * 110.71564 * 263.57184 * 11 10 9 35 35 H 1.08997 * 109.47268 * 304.99634 * 14 12 11 36 36 H 1.08996 * 109.47382 * 65.00233 * 14 12 11 37 37 H 0.97006 * 119.99982 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.47330 * 299.99684 * 18 16 15 39 39 H 1.08996 * 109.46898 * 60.00179 * 18 16 15 40 40 H 1.08999 * 109.47222 * 300.00423 * 20 19 18 41 41 H 1.09007 * 109.47307 * 59.99755 * 20 19 18 42 42 H 1.08001 * 119.99986 * 316.24260 * 21 20 19 43 43 H 1.08000 * 119.99836 * 188.03308 * 22 21 20 44 44 H 1.08008 * 120.06957 * 359.97438 * 24 23 22 45 45 H 1.08001 * 119.92679 * 180.27310 * 25 24 23 46 46 H 1.07996 * 119.85532 * 179.74061 * 26 25 24 47 47 H 1.08005 * 119.92580 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.07538 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.28933 * 37.02951 * 29 9 7 50 50 H 1.08994 * 110.52495 * 274.75338 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0017 11 6 -0.4517 -4.0434 0.0314 12 6 0.8480 -4.6573 0.6156 13 1 0.8539 -4.5963 1.7039 14 6 1.0292 -6.1032 0.1493 15 7 2.1976 -6.6874 0.8125 16 6 2.5528 -7.9614 0.5531 17 8 1.9050 -8.6243 -0.2290 18 6 3.7551 -8.5621 1.2350 19 8 3.9243 -9.9125 0.7996 20 6 5.0434 -10.5774 1.3891 21 6 5.1259 -11.9864 0.8610 22 6 6.2972 -12.4911 0.4992 23 6 7.5416 -11.7435 0.7768 24 6 8.6054 -11.7941 -0.1247 25 6 9.7622 -11.0893 0.1375 26 6 9.8729 -10.3424 1.2968 27 6 8.8242 -10.2931 2.1977 28 6 7.6598 -10.9887 1.9445 29 6 1.9309 -3.7358 0.0017 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5542 -2.0850 -0.9005 32 1 -0.5577 -2.0493 0.8836 33 1 -1.3015 -4.2478 0.6827 34 1 -0.6400 -4.4179 -0.9748 35 1 0.1406 -6.6810 0.4035 36 1 1.1776 -6.1209 -0.9303 37 1 2.7160 -6.1571 1.4378 38 1 4.6435 -7.9840 0.9808 39 1 3.6069 -8.5447 2.3147 40 1 5.9585 -10.0413 1.1374 41 1 4.9227 -10.6014 2.4722 42 1 4.2309 -12.5850 0.7774 43 1 6.3420 -13.4486 0.0015 44 1 8.5219 -12.3805 -1.0279 45 1 10.5846 -11.1241 -0.5617 46 1 10.7820 -9.7959 1.4994 47 1 8.9170 -9.7085 3.1011 48 1 6.8417 -10.9490 2.6484 49 1 2.8308 -3.7460 0.6167 50 1 2.1639 -4.0503 -1.0156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266519818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:50 Heat of formation + Delta-G solvation = -9.581096 kcal Electronic energy + Delta-G solvation = -28268.266312 eV Core-core repulsion = 24261.741454 eV Total energy + Delta-G solvation = -4006.524858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.99445 -39.66321 -38.06504 -37.42742 -35.04599 -34.61611 -32.54286 -31.47500 -30.47510 -29.95175 -28.87219 -27.77980 -26.28703 -25.23261 -23.39128 -22.92982 -22.69744 -20.81904 -20.00427 -19.90525 -19.53793 -17.65381 -17.11889 -16.80366 -16.75251 -16.54168 -15.99500 -15.71739 -15.34388 -15.08043 -14.75133 -14.54941 -14.43123 -13.88156 -13.81262 -13.70446 -13.48437 -13.09407 -13.01855 -12.63946 -12.43477 -12.34279 -12.00277 -11.96741 -11.74659 -11.48375 -11.39776 -11.12560 -10.91504 -10.79089 -10.49468 -10.39911 -10.17416 -10.02738 -9.89809 -9.88652 -9.68788 -9.64399 -9.29028 -8.98438 -8.67103 -8.60694 -6.84429 -5.71944 -3.05590 0.57516 0.99106 1.87331 2.60961 2.80653 3.39353 3.43413 3.43599 3.45054 3.85249 4.32246 4.44531 4.48085 4.55329 4.60431 4.69644 4.75024 4.85094 4.90189 4.92843 4.99866 5.05596 5.10647 5.11729 5.22280 5.36183 5.41363 5.53383 5.54075 5.63105 5.67610 5.88744 5.91334 5.94284 6.03450 6.05448 6.11365 6.17284 6.31025 6.34104 6.40762 6.48621 6.53000 6.57284 6.66255 6.77126 6.90094 7.51394 7.54501 7.62624 7.81982 8.22869 8.25092 9.21095 9.81284 10.47985 11.39659 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.001727 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.424475 B =16204.956960 C =17990.593274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.134 3.866 15 N -0.724 5.724 16 C 0.511 3.489 17 O -0.524 6.524 18 C 0.044 3.956 19 O -0.360 6.360 20 C 0.078 3.922 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.061 4.061 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.117 4.117 29 C 0.141 3.859 30 H 0.253 0.747 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.035 0.965 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.363 -24.920 5.935 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.399 6.399 18 C -0.036 4.036 19 O -0.278 6.278 20 C 0.002 3.998 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.061 4.061 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.139 4.139 28 C -0.135 4.135 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.054 0.946 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 14.699 -25.246 5.217 29.676 hybrid contribution 0.889 1.323 0.490 1.667 sum 15.587 -23.923 5.706 29.118 Atomic orbital electron populations 1.69956 1.04869 1.25147 1.56968 1.24815 0.95746 0.97694 1.02291 0.86190 0.78434 0.83193 0.77868 1.21185 1.21598 1.21197 1.18996 0.90370 0.82425 1.43938 0.90555 1.44541 1.01722 0.99797 1.87238 1.21150 0.84343 0.88184 1.01137 1.22857 0.95406 0.99373 0.99745 1.22601 0.98645 0.91916 1.00505 0.90182 1.21417 0.87008 0.93106 0.97386 1.45964 1.31760 1.12740 1.47224 1.20164 0.85626 0.81983 0.82624 1.90728 1.53746 1.60627 1.34825 1.22209 0.97442 0.84983 0.98938 1.88017 1.48585 1.23571 1.67643 1.22026 0.89393 0.91712 0.96660 1.23030 0.98181 0.95114 0.98609 1.21677 0.91021 1.00317 1.00335 1.19127 0.94300 0.97707 0.94951 1.21297 0.92838 0.99455 0.98925 1.21137 0.97844 0.97339 0.97455 1.21255 0.98946 0.99029 0.94488 1.21128 0.93412 0.99652 0.99664 1.21494 0.98005 0.97060 0.96905 1.21635 0.93957 0.86133 0.96782 0.93697 0.93927 0.93544 0.91968 0.92160 0.91564 0.91243 0.76385 0.90134 0.90245 0.91220 0.92125 0.85463 0.85346 0.85759 0.85878 0.85986 0.85779 0.85615 0.94638 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.34 10.29 -15.06 -0.15 -6.49 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.29 3.41 -169.83 -0.58 -15.87 16 10 C 0.18 4.24 5.37 -3.06 -0.02 4.22 16 11 C -0.13 -2.44 6.42 -24.89 -0.16 -2.60 16 12 C -0.12 -1.89 3.05 -88.49 -0.27 -2.16 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.92 5.14 -4.04 -0.02 1.90 16 15 N -0.72 -8.91 5.50 -60.29 -0.33 -9.24 16 16 C 0.51 6.99 7.91 -10.98 -0.09 6.90 16 17 O -0.52 -9.58 16.50 -14.35 -0.24 -9.82 16 18 C 0.04 0.44 6.42 36.01 0.23 0.67 16 19 O -0.36 -4.37 9.86 -55.14 -0.54 -4.92 16 20 C 0.08 0.67 4.53 36.00 0.16 0.83 16 21 C -0.13 -1.08 9.84 -36.22 -0.36 -1.44 16 22 C -0.12 -0.85 9.81 -37.58 -0.37 -1.22 16 23 C -0.06 -0.48 5.17 -105.01 -0.54 -1.02 16 24 C -0.11 -0.79 9.79 -39.20 -0.38 -1.17 16 25 C -0.12 -0.82 10.03 -39.64 -0.40 -1.21 16 26 C -0.12 -0.79 10.04 -39.50 -0.40 -1.19 16 27 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 28 C -0.12 -0.85 7.42 -39.19 -0.29 -1.14 16 29 C 0.14 2.79 6.67 -2.37 -0.02 2.77 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 31 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 32 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 37 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.59 5.32 -51.93 -0.28 0.31 16 41 H 0.06 0.40 7.51 -51.93 -0.39 0.01 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 48 H 0.13 0.75 5.83 -52.49 -0.31 0.44 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -34.97 409.10 -11.49 -46.46 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.95 Total: 0.62 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.56 Total: -3.91 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.34 Total: -51.56 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.78 Total: -14.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.97 -11.49 -46.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.875 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds