Wall clock time and date at job start Wed Apr 1 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99732 * 2 1 4 4 H 1.48502 * 109.47292 * 239.99878 * 3 2 1 5 5 H 1.48503 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47454 * 119.99739 * 3 2 1 7 7 C 1.38811 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00069 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64751 * 0.02661 * 9 7 2 11 11 C 1.54332 * 107.40112 * 181.10129 * 10 9 7 12 12 C 1.55154 * 102.93969 * 22.11760 * 11 10 9 13 13 H 1.08999 * 111.00200 * 82.61452 * 12 11 10 14 14 C 1.52998 * 110.99913 * 206.42250 * 12 11 10 15 15 N 1.46504 * 109.47141 * 185.00321 * 14 12 11 16 16 C 1.34777 * 120.00174 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00066 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99718 * 179.97438 * 16 15 14 19 19 O 1.42893 * 109.46754 * 179.97438 * 18 16 15 20 20 C 1.42899 * 114.00292 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47564 * 180.02562 * 20 19 18 22 22 C 1.32570 * 119.99926 * 136.24732 * 21 20 19 23 23 C 1.47809 * 120.00149 * 8.02540 * 22 21 20 24 24 C 1.39531 * 120.14503 * 215.11511 * 23 22 21 25 25 C 1.37973 * 119.85769 * 179.72291 * 24 23 22 26 26 C 1.38346 * 120.14097 * 0.53426 * 25 24 23 27 27 C 1.38338 * 120.28406 * 359.76424 * 26 25 24 28 28 C 1.37974 * 120.14743 * 359.95397 * 27 26 25 29 29 C 1.47747 * 125.82288 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99783 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.87999 * 61.60684 * 10 9 7 32 32 H 1.09003 * 109.88511 * 300.59528 * 10 9 7 33 33 H 1.09001 * 110.71770 * 140.48184 * 11 10 9 34 34 H 1.09000 * 110.71564 * 263.57184 * 11 10 9 35 35 H 1.08997 * 109.47268 * 304.99634 * 14 12 11 36 36 H 1.08996 * 109.47382 * 65.00233 * 14 12 11 37 37 H 0.97006 * 119.99982 * 359.97438 * 15 14 12 38 38 H 1.08994 * 109.47330 * 299.99684 * 18 16 15 39 39 H 1.08996 * 109.46898 * 60.00179 * 18 16 15 40 40 H 1.08999 * 109.47222 * 300.00423 * 20 19 18 41 41 H 1.09007 * 109.47307 * 59.99755 * 20 19 18 42 42 H 1.08001 * 119.99986 * 316.24260 * 21 20 19 43 43 H 1.08000 * 119.99836 * 188.03308 * 22 21 20 44 44 H 1.08008 * 120.06957 * 359.97438 * 24 23 22 45 45 H 1.08001 * 119.92679 * 180.27310 * 25 24 23 46 46 H 1.07996 * 119.85532 * 179.74061 * 26 25 24 47 47 H 1.08005 * 119.92580 * 179.97438 * 27 26 25 48 48 H 1.08000 * 120.07538 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.28933 * 37.02951 * 29 9 7 50 50 H 1.08994 * 110.52495 * 274.75338 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0017 11 6 -0.4517 -4.0434 0.0314 12 6 0.8480 -4.6573 0.6156 13 1 0.8539 -4.5963 1.7039 14 6 1.0292 -6.1032 0.1493 15 7 2.1976 -6.6874 0.8125 16 6 2.5528 -7.9614 0.5531 17 8 1.9050 -8.6243 -0.2290 18 6 3.7551 -8.5621 1.2350 19 8 3.9243 -9.9125 0.7996 20 6 5.0434 -10.5774 1.3891 21 6 5.1259 -11.9864 0.8610 22 6 6.2972 -12.4911 0.4992 23 6 7.5416 -11.7435 0.7768 24 6 8.6054 -11.7941 -0.1247 25 6 9.7622 -11.0893 0.1375 26 6 9.8729 -10.3424 1.2968 27 6 8.8242 -10.2931 2.1977 28 6 7.6598 -10.9887 1.9445 29 6 1.9309 -3.7358 0.0017 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5542 -2.0850 -0.9005 32 1 -0.5577 -2.0493 0.8836 33 1 -1.3015 -4.2478 0.6827 34 1 -0.6400 -4.4179 -0.9748 35 1 0.1406 -6.6810 0.4035 36 1 1.1776 -6.1209 -0.9303 37 1 2.7160 -6.1571 1.4378 38 1 4.6435 -7.9840 0.9808 39 1 3.6069 -8.5447 2.3147 40 1 5.9585 -10.0413 1.1374 41 1 4.9227 -10.6014 2.4722 42 1 4.2309 -12.5850 0.7774 43 1 6.3420 -13.4486 0.0015 44 1 8.5219 -12.3805 -1.0279 45 1 10.5846 -11.1241 -0.5617 46 1 10.7820 -9.7959 1.4994 47 1 8.9170 -9.7085 3.1011 48 1 6.8417 -10.9490 2.6484 49 1 2.8308 -3.7460 0.6167 50 1 2.1639 -4.0503 -1.0156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266519818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:48 Heat of formation + Delta-G solvation = -30.256310 kcal Electronic energy + Delta-G solvation = -28269.162857 eV Core-core repulsion = 24261.741454 eV Total energy + Delta-G solvation = -4007.421403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.91338 -40.32720 -39.32513 -38.52450 -36.03606 -35.58689 -34.32164 -31.97716 -31.78989 -30.90709 -30.21263 -28.92949 -27.29696 -26.68120 -24.90550 -23.43388 -23.21532 -22.15852 -21.60373 -21.13941 -20.25833 -18.88513 -18.33195 -17.97827 -17.47092 -17.28413 -16.91474 -16.63906 -16.59319 -16.18988 -15.85689 -15.65445 -15.54664 -15.13491 -14.80380 -14.51368 -14.28225 -14.23544 -13.94881 -13.80143 -13.55125 -13.45420 -13.33890 -13.13170 -12.97065 -12.76794 -12.59830 -12.53769 -12.06442 -11.94468 -11.88475 -11.82941 -11.66128 -11.53969 -11.45092 -11.11124 -10.84523 -10.68674 -10.51258 -10.09364 -9.79060 -9.20202 -8.88860 -7.83698 -5.19224 0.04892 0.49949 1.30833 1.46423 1.49781 1.55991 1.58841 1.92481 2.50445 2.91410 3.10464 3.34242 3.61757 3.70464 3.79788 3.86653 3.98030 4.03698 4.05737 4.09080 4.14403 4.22989 4.25678 4.29985 4.36017 4.41910 4.46108 4.59514 4.62039 4.62956 4.72292 4.82824 4.83568 4.93387 5.05865 5.06759 5.09100 5.16115 5.34253 5.39894 5.41755 5.46449 5.48198 5.62957 5.65515 5.68782 5.77488 5.79345 6.06275 6.11687 6.21072 6.56834 7.11287 7.23468 7.79032 8.44066 9.26539 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012850 B = 0.001727 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.424475 B =16204.956960 C =17990.593274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.094 0.906 14 C 0.145 3.855 15 N -0.712 5.712 16 C 0.509 3.491 17 O -0.577 6.577 18 C 0.047 3.953 19 O -0.394 6.394 20 C 0.078 3.922 21 C -0.150 4.150 22 C -0.110 4.110 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.124 4.124 29 C 0.136 3.864 30 H 0.246 0.754 31 H 0.002 0.998 32 H 0.014 0.986 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.137 0.863 49 H 0.052 0.948 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.359 -25.815 7.314 31.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.163 4.163 12 C -0.113 4.113 13 H 0.113 0.887 14 C 0.021 3.979 15 N -0.366 5.366 16 C 0.296 3.704 17 O -0.456 6.456 18 C -0.032 4.032 19 O -0.314 6.314 20 C 0.004 3.996 21 C -0.168 4.168 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.142 4.142 29 C 0.011 3.989 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.151 0.849 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.154 0.846 49 H 0.070 0.930 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 16.745 -26.157 6.625 31.756 hybrid contribution 0.340 1.570 0.036 1.607 sum 17.085 -24.587 6.660 30.672 Atomic orbital electron populations 1.70191 1.06326 1.25272 1.58367 1.25690 0.96650 1.01159 1.02820 0.85137 0.77089 0.78737 0.78271 1.20504 1.22284 1.19940 1.19435 0.91058 0.83712 1.42820 0.89794 1.44875 1.02458 1.01225 1.87028 1.20919 0.83917 0.91808 0.97639 1.22725 0.97309 0.94994 1.01227 1.22396 0.95837 0.92107 1.00914 0.88748 1.21145 0.88243 0.91787 0.96720 1.45820 1.31159 1.12669 1.46959 1.20863 0.86066 0.81709 0.81799 1.90707 1.55716 1.61910 1.37288 1.22316 0.96239 0.84400 1.00282 1.87971 1.49996 1.24588 1.68830 1.22150 0.88346 0.91413 0.97734 1.23093 0.98416 0.95378 0.99874 1.21838 0.90754 1.00693 0.99445 1.19314 0.94596 0.98414 0.95623 1.21526 0.93088 0.99884 0.99387 1.21411 0.98176 0.97200 0.97998 1.21566 0.99678 0.98950 0.94374 1.21418 0.93224 0.99657 1.00360 1.21690 0.98636 0.96936 0.96949 1.21831 0.95513 0.84310 0.97205 0.94493 0.98012 0.96814 0.89571 0.91284 0.90853 0.92590 0.74622 0.87854 0.86747 0.91077 0.90004 0.85658 0.84153 0.84890 0.84359 0.84329 0.84013 0.84566 0.92955 0.96543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 10.31 21.65 0.22 -57.34 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 45.52 29.55 68.60 2.03 47.55 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.24 -13.38 10.29 84.03 0.86 -12.52 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -31.80 3.41 -691.20 -2.35 -34.16 16 10 C 0.18 8.94 5.37 86.73 0.47 9.41 16 11 C -0.12 -4.33 6.42 31.78 0.20 -4.13 16 12 C -0.09 -2.80 3.05 -9.41 -0.03 -2.83 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 3.83 5.14 86.38 0.44 4.28 16 15 N -0.71 -15.60 5.50 -463.05 -2.55 -18.15 16 16 C 0.51 12.91 7.91 87.66 0.69 13.60 16 17 O -0.58 -20.75 16.50 16.00 0.26 -20.49 16 18 C 0.05 0.81 6.42 71.24 0.46 1.26 16 19 O -0.39 -8.98 9.86 -129.94 -1.28 -10.26 16 20 C 0.08 1.21 4.53 71.23 0.32 1.54 16 21 C -0.15 -2.33 9.84 24.53 0.24 -2.09 16 22 C -0.11 -1.52 9.81 23.65 0.23 -1.29 16 23 C -0.08 -1.16 5.17 -20.12 -0.10 -1.27 16 24 C -0.12 -1.67 9.79 22.52 0.22 -1.45 16 25 C -0.13 -1.60 10.03 22.23 0.22 -1.37 16 26 C -0.13 -1.48 10.04 22.32 0.22 -1.25 16 27 C -0.13 -1.48 10.03 22.23 0.22 -1.26 16 28 C -0.12 -1.60 7.42 22.52 0.17 -1.43 16 29 C 0.14 5.17 6.67 86.78 0.58 5.75 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.00 0.09 7.51 -2.39 -0.02 0.07 16 32 H 0.01 0.75 7.37 -2.39 -0.02 0.73 16 33 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 34 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.67 7.96 -2.39 -0.02 1.65 16 37 H 0.42 6.72 8.47 -92.70 -0.79 5.93 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.06 5.32 -2.39 -0.01 1.05 16 41 H 0.08 0.87 7.51 -2.38 -0.02 0.85 16 42 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 48 H 0.14 1.34 5.83 -2.91 -0.02 1.33 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.02 0.65 7.90 -2.39 -0.02 0.63 16 Total: -1.00 -78.35 409.10 2.37 -75.98 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.14 Total: 15.45 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.89 Total: 1.40 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.68 Total: -109.64 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.02 Total: -30.74 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -78.35 2.37 -75.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.725 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds