Wall clock time and date at job start Wed Apr 1 2020 03:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00338 * 2 1 4 4 H 1.48508 * 109.47439 * 270.00040 * 3 2 1 5 5 H 1.48507 * 109.47006 * 29.99848 * 3 2 1 6 6 H 1.48501 * 109.47483 * 149.99860 * 3 2 1 7 7 C 1.38814 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00485 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64749 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.39983 * 181.10549 * 10 9 7 12 12 C 1.55159 * 102.94134 * 22.11770 * 11 10 9 13 13 H 1.08989 * 111.00739 * 82.61006 * 12 11 10 14 14 C 1.53010 * 111.00026 * 206.42377 * 12 11 10 15 15 N 1.46497 * 109.46984 * 184.99828 * 14 12 11 16 16 C 1.34772 * 120.00394 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99334 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00460 * 180.02562 * 16 15 14 19 19 O 1.42899 * 109.47270 * 180.02562 * 18 16 15 20 20 C 1.42901 * 114.00103 * 180.02562 * 19 18 16 21 21 C 1.50695 * 109.47057 * 179.97438 * 20 19 18 22 22 C 1.32575 * 119.99932 * 135.00011 * 21 20 19 23 23 C 1.47807 * 119.99854 * 179.97438 * 22 21 20 24 24 C 1.39536 * 120.14497 * 359.72430 * 23 22 21 25 25 C 1.37977 * 119.85732 * 179.72003 * 24 23 22 26 26 C 1.38345 * 120.13986 * 0.53227 * 25 24 23 27 27 C 1.38347 * 120.28725 * 359.76801 * 26 25 24 28 28 C 1.37973 * 120.14251 * 359.95006 * 27 26 25 29 29 C 1.47743 * 125.82120 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88367 * 61.61048 * 10 9 7 32 32 H 1.09000 * 109.88319 * 300.59666 * 10 9 7 33 33 H 1.09004 * 110.71964 * 140.48013 * 11 10 9 34 34 H 1.08995 * 110.72102 * 263.57296 * 11 10 9 35 35 H 1.08996 * 109.46873 * 304.99862 * 14 12 11 36 36 H 1.08996 * 109.46774 * 65.00127 * 14 12 11 37 37 H 0.97011 * 119.99607 * 0.02562 * 15 14 12 38 38 H 1.09006 * 109.47138 * 299.99856 * 18 16 15 39 39 H 1.08995 * 109.47468 * 59.99924 * 18 16 15 40 40 H 1.08993 * 109.47190 * 299.99468 * 20 19 18 41 41 H 1.09002 * 109.47365 * 59.99348 * 20 19 18 42 42 H 1.08000 * 120.00447 * 314.99387 * 21 20 19 43 43 H 1.07991 * 119.99774 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.06797 * 359.97438 * 24 23 22 45 45 H 1.07996 * 119.92950 * 180.27427 * 25 24 23 46 46 H 1.07998 * 119.85368 * 179.73730 * 26 25 24 47 47 H 1.07993 * 119.92874 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.07355 * 180.02562 * 28 27 26 49 49 H 1.09003 * 110.29227 * 37.02208 * 29 9 7 50 50 H 1.08996 * 110.53057 * 274.75420 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0283 12 6 0.8472 -4.6576 0.6133 13 1 0.8525 -4.5970 1.7015 14 6 1.0287 -6.1034 0.1466 15 7 2.1966 -6.6879 0.8104 16 6 2.5515 -7.9620 0.5515 17 8 1.9041 -8.6246 -0.2314 18 6 3.7524 -8.5634 1.2348 19 8 3.9220 -9.9137 0.7988 20 6 5.0394 -10.5795 1.3906 21 6 5.1218 -11.9885 0.8626 22 6 6.2896 -12.4858 0.4798 23 6 6.3704 -13.8680 -0.0375 24 6 5.2205 -14.6541 -0.1189 25 6 5.3018 -15.9417 -0.6081 26 6 6.5219 -16.4574 -1.0072 27 6 7.6668 -15.6854 -0.9232 28 6 7.5981 -14.3944 -0.4412 29 6 1.9306 -3.7359 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5537 -2.0846 -0.9028 32 1 -0.5585 -2.0496 0.8812 33 1 -1.3022 -4.2479 0.6790 34 1 -0.6395 -4.4175 -0.9781 35 1 0.1399 -6.6812 0.3998 36 1 1.1780 -6.1206 -0.9330 37 1 2.7141 -6.1579 1.4368 38 1 4.6416 -7.9859 0.9816 39 1 3.6030 -8.5459 2.3143 40 1 5.9553 -10.0437 1.1414 41 1 4.9161 -10.6041 2.4733 42 1 4.2295 -12.5934 0.7961 43 1 7.1819 -11.8812 0.5468 44 1 4.2681 -14.2542 0.1965 45 1 4.4117 -16.5496 -0.6758 46 1 6.5809 -17.4673 -1.3855 47 1 8.6163 -16.0939 -1.2359 48 1 8.4925 -13.7926 -0.3765 49 1 2.8301 -3.7465 0.6161 50 1 2.1644 -4.0500 -1.0167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266519819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:53 Heat of formation + Delta-G solvation = -16.791389 kcal Electronic energy + Delta-G solvation = -27529.532797 eV Core-core repulsion = 23522.695277 eV Total energy + Delta-G solvation = -4006.837520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.85728 -39.57431 -38.14908 -37.45334 -34.96731 -34.62762 -32.55285 -31.38626 -30.95049 -30.02202 -28.84648 -27.68622 -25.97428 -25.20352 -23.38843 -23.32405 -22.32578 -20.83466 -20.01260 -19.94636 -19.57848 -17.75707 -17.26729 -16.97914 -16.72479 -16.56082 -15.84167 -15.66229 -15.30168 -15.11815 -14.69346 -14.51936 -14.45502 -13.87332 -13.76542 -13.58760 -13.43135 -13.31353 -13.09485 -12.61475 -12.49661 -12.35376 -11.99788 -11.81522 -11.73643 -11.48961 -11.40436 -11.22899 -10.91443 -10.81249 -10.71685 -10.41009 -10.16127 -10.04584 -10.02542 -9.89786 -9.70191 -9.65648 -9.34975 -8.99769 -8.61513 -8.52939 -6.84984 -5.72766 -3.06397 0.48310 1.01320 2.00245 2.59331 2.77623 3.38565 3.43328 3.45388 3.52290 3.77872 4.35830 4.37746 4.47511 4.57042 4.61877 4.65942 4.76347 4.82246 4.88347 4.92719 4.98501 5.03252 5.09872 5.13280 5.19946 5.21513 5.40633 5.53459 5.55274 5.62357 5.66923 5.86477 5.87997 5.99477 6.02746 6.04651 6.11899 6.17294 6.33367 6.36694 6.39653 6.47867 6.52361 6.58433 6.64891 6.73607 6.89283 7.49953 7.54251 7.62033 7.81510 8.21378 8.24359 9.20427 9.80662 10.47211 11.38959 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.001302 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.653318 B =21492.754019 C =22178.272870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.134 3.866 15 N -0.724 5.724 16 C 0.511 3.489 17 O -0.524 6.524 18 C 0.044 3.956 19 O -0.359 6.359 20 C 0.089 3.911 21 C -0.134 4.134 22 C -0.112 4.112 23 C -0.055 4.055 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.110 4.110 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.035 0.965 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.809 -29.340 4.362 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.377 5.377 16 C 0.296 3.704 17 O -0.399 6.399 18 C -0.036 4.036 19 O -0.277 6.277 20 C 0.013 3.987 21 C -0.152 4.152 22 C -0.130 4.130 23 C -0.055 4.055 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.128 4.128 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.054 0.946 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 12.154 -29.671 3.650 32.271 hybrid contribution 0.883 1.344 0.483 1.679 sum 13.037 -28.327 4.134 31.456 Atomic orbital electron populations 1.69965 1.04889 1.25037 1.57029 1.24803 0.95719 0.97670 1.02249 0.86124 0.78543 0.83510 0.77590 1.21602 1.21655 1.20726 1.19052 0.90407 0.82424 1.43877 0.90493 1.44550 1.01723 0.99807 1.87233 1.21148 0.84349 0.88193 1.01139 1.22855 0.95404 0.99360 0.99742 1.22607 0.98664 0.91919 1.00515 0.90173 1.21419 0.87017 0.93104 0.97380 1.45965 1.31835 1.12738 1.47146 1.20163 0.85641 0.81988 0.82658 1.90735 1.53730 1.60652 1.34809 1.22230 0.97506 0.84895 0.99017 1.88047 1.48473 1.23684 1.67487 1.21498 0.89338 0.90863 0.97012 1.23094 0.98391 0.95435 0.98261 1.21603 0.98141 0.94008 0.99260 1.19027 0.93537 0.93598 0.99293 1.21396 0.98166 0.94206 0.99360 1.21125 0.97925 0.95633 0.98928 1.21242 0.92806 0.99945 0.99998 1.21107 0.98585 0.94363 0.99803 1.21281 0.96953 0.95667 0.98874 1.21632 0.93948 0.86129 0.96776 0.93742 0.93934 0.93539 0.91968 0.92161 0.91563 0.91233 0.76372 0.90032 0.90137 0.92274 0.91723 0.85883 0.86082 0.85549 0.85856 0.86075 0.85930 0.85797 0.94638 0.96245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.33 10.29 -15.05 -0.15 -6.48 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.61 -15.23 3.41 -169.83 -0.58 -15.81 16 10 C 0.18 4.22 5.37 -3.06 -0.02 4.20 16 11 C -0.13 -2.42 6.42 -24.90 -0.16 -2.58 16 12 C -0.12 -1.89 3.05 -88.48 -0.27 -2.16 16 13 H 0.08 1.25 8.14 -51.94 -0.42 0.82 16 14 C 0.13 1.90 5.14 -4.04 -0.02 1.88 16 15 N -0.72 -8.72 5.50 -60.30 -0.33 -9.05 16 16 C 0.51 6.81 7.91 -10.99 -0.09 6.73 16 17 O -0.52 -9.46 16.50 -14.36 -0.24 -9.70 16 18 C 0.04 0.41 6.42 36.00 0.23 0.64 16 19 O -0.36 -4.16 9.86 -55.14 -0.54 -4.70 16 20 C 0.09 0.69 6.36 36.00 0.23 0.92 16 21 C -0.13 -1.09 9.31 -36.22 -0.34 -1.43 16 22 C -0.11 -0.84 9.51 -37.58 -0.36 -1.20 16 23 C -0.05 -0.45 5.87 -105.01 -0.62 -1.06 16 24 C -0.11 -0.91 9.40 -39.19 -0.37 -1.28 16 25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 26 C -0.12 -0.80 10.04 -39.50 -0.40 -1.20 16 27 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 28 C -0.11 -0.79 9.79 -39.19 -0.38 -1.17 16 29 C 0.14 2.77 6.67 -2.37 -0.02 2.75 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 32 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.08 7.96 -51.93 -0.41 0.67 16 37 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.37 7.88 -51.93 -0.41 -0.04 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.12 1.03 6.04 -52.49 -0.32 0.71 16 43 H 0.12 0.70 7.92 -52.49 -0.42 0.29 16 44 H 0.13 0.90 6.17 -52.49 -0.32 0.58 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.55 8.06 -52.49 -0.42 0.12 16 47 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 LS Contribution 414.15 15.07 6.24 6.24 Total: -1.00 -35.05 414.15 -11.54 -46.58 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.02 Total: 0.11 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.61 Total: -4.18 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.34 Total: -51.24 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.78 Total: -14.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.05 -11.54 -46.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds