Wall clock time and date at job start Wed Apr 1 2020 03:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00338 * 2 1 4 4 H 1.48508 * 109.47439 * 270.00040 * 3 2 1 5 5 H 1.48507 * 109.47006 * 29.99848 * 3 2 1 6 6 H 1.48501 * 109.47483 * 149.99860 * 3 2 1 7 7 C 1.38814 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00485 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64749 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.39983 * 181.10549 * 10 9 7 12 12 C 1.55159 * 102.94134 * 22.11770 * 11 10 9 13 13 H 1.08989 * 111.00739 * 82.61006 * 12 11 10 14 14 C 1.53010 * 111.00026 * 206.42377 * 12 11 10 15 15 N 1.46497 * 109.46984 * 184.99828 * 14 12 11 16 16 C 1.34772 * 120.00394 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99334 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00460 * 180.02562 * 16 15 14 19 19 O 1.42899 * 109.47270 * 180.02562 * 18 16 15 20 20 C 1.42901 * 114.00103 * 180.02562 * 19 18 16 21 21 C 1.50695 * 109.47057 * 179.97438 * 20 19 18 22 22 C 1.32575 * 119.99932 * 135.00011 * 21 20 19 23 23 C 1.47807 * 119.99854 * 179.97438 * 22 21 20 24 24 C 1.39536 * 120.14497 * 359.72430 * 23 22 21 25 25 C 1.37977 * 119.85732 * 179.72003 * 24 23 22 26 26 C 1.38345 * 120.13986 * 0.53227 * 25 24 23 27 27 C 1.38347 * 120.28725 * 359.76801 * 26 25 24 28 28 C 1.37973 * 120.14251 * 359.95006 * 27 26 25 29 29 C 1.47743 * 125.82120 * 179.97438 * 9 7 2 30 30 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88367 * 61.61048 * 10 9 7 32 32 H 1.09000 * 109.88319 * 300.59666 * 10 9 7 33 33 H 1.09004 * 110.71964 * 140.48013 * 11 10 9 34 34 H 1.08995 * 110.72102 * 263.57296 * 11 10 9 35 35 H 1.08996 * 109.46873 * 304.99862 * 14 12 11 36 36 H 1.08996 * 109.46774 * 65.00127 * 14 12 11 37 37 H 0.97011 * 119.99607 * 0.02562 * 15 14 12 38 38 H 1.09006 * 109.47138 * 299.99856 * 18 16 15 39 39 H 1.08995 * 109.47468 * 59.99924 * 18 16 15 40 40 H 1.08993 * 109.47190 * 299.99468 * 20 19 18 41 41 H 1.09002 * 109.47365 * 59.99348 * 20 19 18 42 42 H 1.08000 * 120.00447 * 314.99387 * 21 20 19 43 43 H 1.07991 * 119.99774 * 0.02562 * 22 21 20 44 44 H 1.08000 * 120.06797 * 359.97438 * 24 23 22 45 45 H 1.07996 * 119.92950 * 180.27427 * 25 24 23 46 46 H 1.07998 * 119.85368 * 179.73730 * 26 25 24 47 47 H 1.07993 * 119.92874 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.07355 * 180.02562 * 28 27 26 49 49 H 1.09003 * 110.29227 * 37.02208 * 29 9 7 50 50 H 1.08996 * 110.53057 * 274.75420 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0283 12 6 0.8472 -4.6576 0.6133 13 1 0.8525 -4.5970 1.7015 14 6 1.0287 -6.1034 0.1466 15 7 2.1966 -6.6879 0.8104 16 6 2.5515 -7.9620 0.5515 17 8 1.9041 -8.6246 -0.2314 18 6 3.7524 -8.5634 1.2348 19 8 3.9220 -9.9137 0.7988 20 6 5.0394 -10.5795 1.3906 21 6 5.1218 -11.9885 0.8626 22 6 6.2896 -12.4858 0.4798 23 6 6.3704 -13.8680 -0.0375 24 6 5.2205 -14.6541 -0.1189 25 6 5.3018 -15.9417 -0.6081 26 6 6.5219 -16.4574 -1.0072 27 6 7.6668 -15.6854 -0.9232 28 6 7.5981 -14.3944 -0.4412 29 6 1.9306 -3.7359 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5537 -2.0846 -0.9028 32 1 -0.5585 -2.0496 0.8812 33 1 -1.3022 -4.2479 0.6790 34 1 -0.6395 -4.4175 -0.9781 35 1 0.1399 -6.6812 0.3998 36 1 1.1780 -6.1206 -0.9330 37 1 2.7141 -6.1579 1.4368 38 1 4.6416 -7.9859 0.9816 39 1 3.6030 -8.5459 2.3143 40 1 5.9553 -10.0437 1.1414 41 1 4.9161 -10.6041 2.4733 42 1 4.2295 -12.5934 0.7961 43 1 7.1819 -11.8812 0.5468 44 1 4.2681 -14.2542 0.1965 45 1 4.4117 -16.5496 -0.6758 46 1 6.5809 -17.4673 -1.3855 47 1 8.6163 -16.0939 -1.2359 48 1 8.4925 -13.7926 -0.3765 49 1 2.8301 -3.7465 0.6161 50 1 2.1644 -4.0500 -1.0167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266519819.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:52 Heat of formation + Delta-G solvation = -37.504295 kcal Electronic energy + Delta-G solvation = -27530.430976 eV Core-core repulsion = 23522.695277 eV Total energy + Delta-G solvation = -4007.735699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.87621 -40.09853 -39.34877 -38.58370 -36.02603 -35.49751 -34.31983 -31.92529 -31.82616 -31.36288 -30.23630 -28.82553 -27.16168 -26.38908 -24.88178 -23.84857 -22.84484 -22.15675 -21.59698 -21.13719 -20.32613 -18.87965 -18.34527 -18.02080 -17.75669 -17.26801 -16.89187 -16.62239 -16.46469 -16.06083 -15.92532 -15.62537 -15.48272 -15.16085 -14.68856 -14.53066 -14.23806 -14.05730 -13.91570 -13.88032 -13.80041 -13.48302 -13.25177 -13.16460 -12.99567 -12.74666 -12.63348 -12.33168 -12.01289 -11.98815 -11.87740 -11.83103 -11.73986 -11.53832 -11.45204 -11.28313 -10.83294 -10.69578 -10.66206 -10.08654 -9.86910 -9.07070 -8.88756 -7.83910 -5.19376 -0.05885 0.49343 1.44188 1.46763 1.48651 1.57162 1.60406 1.93902 2.50438 2.96469 3.09365 3.34630 3.61971 3.69751 3.83243 3.87132 3.89321 4.03867 4.05927 4.10291 4.19429 4.23112 4.28171 4.31934 4.41857 4.46315 4.47543 4.54543 4.62766 4.63000 4.69000 4.72571 4.83459 4.93695 5.06181 5.07038 5.09120 5.13493 5.34659 5.35105 5.45994 5.46926 5.48911 5.61023 5.63349 5.68651 5.79292 5.83649 6.07703 6.11308 6.21087 6.58340 7.11386 7.25018 7.79115 8.44045 9.26676 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.001302 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.653318 B =21492.754019 C =22178.272870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.094 0.906 14 C 0.145 3.855 15 N -0.712 5.712 16 C 0.507 3.493 17 O -0.579 6.579 18 C 0.047 3.953 19 O -0.396 6.396 20 C 0.088 3.912 21 C -0.151 4.151 22 C -0.108 4.108 23 C -0.076 4.076 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.118 4.118 29 C 0.137 3.863 30 H 0.246 0.754 31 H 0.001 0.999 32 H 0.013 0.987 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.141 0.859 49 H 0.053 0.947 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.203 -30.590 5.453 34.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.371 4.371 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.113 4.113 13 H 0.113 0.887 14 C 0.021 3.979 15 N -0.366 5.366 16 C 0.294 3.706 17 O -0.458 6.458 18 C -0.032 4.032 19 O -0.315 6.315 20 C 0.013 3.987 21 C -0.169 4.169 22 C -0.126 4.126 23 C -0.076 4.076 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.136 4.136 29 C 0.012 3.988 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.254 0.746 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.071 0.929 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 14.597 -30.936 4.773 34.539 hybrid contribution 0.178 1.658 0.105 1.671 sum 14.775 -29.278 4.877 33.156 Atomic orbital electron populations 1.70196 1.06375 1.25199 1.58447 1.25658 0.96583 1.01079 1.02753 0.85088 0.77790 0.79162 0.77352 1.21620 1.22159 1.19002 1.19494 0.91098 0.83718 1.42743 0.89726 1.44883 1.02441 1.01254 1.87021 1.20914 0.83952 0.91810 0.97613 1.22720 0.97327 0.94989 1.01206 1.22403 0.95846 0.92138 1.00921 0.88748 1.21135 0.88284 0.91764 0.96716 1.45821 1.31201 1.12717 1.46891 1.20930 0.86152 0.81670 0.81817 1.90713 1.55774 1.61962 1.37368 1.22339 0.96349 0.84313 1.00223 1.87997 1.50113 1.24758 1.68679 1.21657 0.88954 0.90194 0.97882 1.23146 0.98299 0.96041 0.99421 1.21779 0.98600 0.93895 0.98279 1.19274 0.94055 0.94161 1.00102 1.21572 0.98414 0.94935 1.00140 1.21388 0.98960 0.95576 0.98907 1.21571 0.92590 1.00959 0.99490 1.21451 0.99579 0.94226 0.99275 1.21572 0.97212 0.96266 0.98574 1.21826 0.95499 0.84258 0.97221 0.94500 0.98047 0.96838 0.89614 0.91304 0.90959 0.92598 0.74579 0.87239 0.86751 0.90458 0.89816 0.87109 0.84267 0.85721 0.84555 0.84061 0.83771 0.84087 0.92893 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.31 21.65 0.22 -57.28 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.24 -13.35 10.29 84.03 0.86 -12.49 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.63 -31.69 3.41 -691.23 -2.35 -34.04 16 10 C 0.18 8.93 5.37 86.73 0.47 9.39 16 11 C -0.12 -4.32 6.42 31.78 0.20 -4.11 16 12 C -0.09 -2.80 3.05 -9.41 -0.03 -2.83 16 13 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.15 3.80 5.14 86.38 0.44 4.25 16 15 N -0.71 -15.27 5.50 -463.06 -2.55 -17.82 16 16 C 0.51 12.56 7.91 87.66 0.69 13.25 16 17 O -0.58 -20.66 16.50 15.98 0.26 -20.40 16 18 C 0.05 0.74 6.42 71.23 0.46 1.20 16 19 O -0.40 -8.55 9.86 -129.94 -1.28 -9.83 16 20 C 0.09 1.20 6.36 71.23 0.45 1.65 16 21 C -0.15 -2.38 9.31 24.53 0.23 -2.15 16 22 C -0.11 -1.52 9.51 23.65 0.22 -1.29 16 23 C -0.08 -1.21 5.87 -20.12 -0.12 -1.33 16 24 C -0.13 -2.18 9.40 22.52 0.21 -1.97 16 25 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 26 C -0.13 -1.54 10.04 22.32 0.22 -1.32 16 27 C -0.13 -1.48 10.03 22.23 0.22 -1.26 16 28 C -0.12 -1.56 9.79 22.52 0.22 -1.34 16 29 C 0.14 5.15 6.67 86.78 0.58 5.73 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.00 0.07 7.51 -2.39 -0.02 0.05 16 32 H 0.01 0.73 7.37 -2.39 -0.02 0.72 16 33 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 34 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 37 H 0.42 6.47 8.47 -92.70 -0.79 5.69 16 38 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.74 7.88 -2.39 -0.02 0.72 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.95 6.04 -2.91 -0.02 1.93 16 43 H 0.14 1.35 7.92 -2.92 -0.02 1.32 16 44 H 0.12 1.94 6.17 -2.91 -0.02 1.92 16 45 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 48 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.02 0.66 7.90 -2.39 -0.02 0.64 16 Total: -1.00 -79.33 414.15 2.51 -76.82 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.14 Total: 14.77 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 6.03 Total: 0.39 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.68 Total: -109.15 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.02 Total: -30.23 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.33 2.51 -76.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266519819.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.313 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds