Wall clock time and date at job start Wed Apr 1 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47179 * 269.99980 * 3 2 1 5 5 H 1.48492 * 109.47222 * 30.00004 * 3 2 1 6 6 H 1.48502 * 109.46929 * 150.00025 * 3 2 1 7 7 C 1.38810 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00331 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99949 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47232 * 185.44623 * 10 9 7 12 12 H 1.09004 * 109.69821 * 47.98914 * 11 10 9 13 13 C 1.53620 * 109.66495 * 168.58237 * 11 10 9 14 14 C 1.53041 * 109.23991 * 174.54966 * 13 11 10 15 15 C 1.53042 * 109.53735 * 298.51361 * 14 13 11 16 16 C 1.53193 * 109.31410 * 61.36795 * 15 14 13 17 17 N 1.46921 * 109.58630 * 287.63872 * 11 10 9 18 18 C 1.34781 * 120.63109 * 6.62601 * 17 11 10 19 19 O 1.21286 * 120.00019 * 4.75764 * 18 17 11 20 20 C 1.50697 * 120.00216 * 184.75769 * 18 17 11 21 21 H 1.09008 * 109.39550 * 31.99132 * 20 18 17 22 22 C 1.53070 * 109.42332 * 272.09372 * 20 18 17 23 23 C 1.53405 * 108.31536 * 191.75970 * 22 20 18 24 24 O 1.42827 * 108.37934 * 64.66857 * 23 22 20 25 25 C 1.35841 * 117.83827 * 310.69785 * 24 23 22 26 26 C 1.39148 * 118.49717 * 197.28180 * 25 24 23 27 27 C 1.37967 * 120.21430 * 180.41808 * 26 25 24 28 28 C 1.38291 * 119.95517 * 0.02562 * 27 26 25 29 29 C 1.38108 * 119.98661 * 359.90469 * 28 27 26 30 30 C 1.38366 * 121.80286 * 17.52941 * 25 24 23 31 31 H 0.97000 * 119.99423 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99700 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47430 * 65.44464 * 10 9 7 34 34 H 1.09005 * 109.47159 * 305.44236 * 10 9 7 35 35 H 1.08998 * 109.63120 * 54.56322 * 13 11 10 36 36 H 1.08996 * 109.43716 * 294.41505 * 13 11 10 37 37 H 1.08998 * 109.46046 * 178.49195 * 14 13 11 38 38 H 1.08997 * 109.46271 * 58.53450 * 14 13 11 39 39 H 1.08998 * 109.49543 * 301.41016 * 15 14 13 40 40 H 1.09006 * 109.52126 * 181.33151 * 15 14 13 41 41 H 1.08998 * 109.58496 * 185.57944 * 16 15 14 42 42 H 1.08998 * 109.70221 * 65.22024 * 16 15 14 43 43 H 1.08997 * 109.69387 * 72.04918 * 22 20 18 44 44 H 1.09000 * 109.69734 * 311.46171 * 22 20 18 45 45 H 1.09007 * 109.68246 * 304.94281 * 23 22 20 46 46 H 1.08998 * 109.71453 * 184.41015 * 23 22 20 47 47 H 1.08007 * 119.89452 * 0.39410 * 26 25 24 48 48 H 1.07999 * 120.02715 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.00556 * 179.87615 * 28 27 26 50 50 H 1.08004 * 119.84257 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0694 -4.8165 -0.1355 12 1 0.3741 -4.6124 -0.9498 13 6 1.8350 -6.1174 -0.4208 14 6 0.8528 -7.2910 -0.4211 15 6 0.1975 -7.4104 0.9568 16 6 -0.5825 -6.1272 1.2598 17 7 0.3235 -4.9790 1.1198 18 6 0.4634 -4.0886 2.1219 19 8 1.1427 -3.0967 1.9614 20 6 -0.2244 -4.3253 3.4417 21 1 -0.2864 -5.3971 3.6305 22 6 -1.6353 -3.7337 3.3939 23 6 -2.2012 -3.7206 4.8197 24 8 -1.4111 -2.8307 5.6096 25 6 -0.0606 -2.9696 5.5623 26 6 0.7025 -2.3855 6.5686 27 6 2.0775 -2.4971 6.5507 28 6 2.7008 -3.1910 5.5297 29 6 1.9464 -3.7732 4.5300 30 6 0.5655 -3.6668 4.5442 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6087 -3.7576 0.9368 34 1 2.7563 -3.6739 -0.8351 35 1 2.5896 -6.2748 0.3499 36 1 2.3185 -6.0475 -1.3951 37 1 1.3881 -8.2125 -0.6497 38 1 0.0843 -7.1212 -1.1752 39 1 0.9675 -7.5556 1.7144 40 1 -0.4844 -8.2608 0.9634 41 1 -0.9684 -6.1661 2.2784 42 1 -1.4110 -6.0265 0.5587 43 1 -2.2689 -4.3464 2.7527 44 1 -1.5940 -2.7159 3.0058 45 1 -2.1562 -4.7246 5.2418 46 1 -3.2351 -3.3760 4.8018 47 1 0.2168 -1.8427 7.3662 48 1 2.6669 -2.0423 7.3331 49 1 3.7773 -3.2772 5.5138 50 1 2.4356 -4.3142 3.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266880130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:41 Heat of formation + Delta-G solvation = 6.214408 kcal Electronic energy + Delta-G solvation = -32607.138702 eV Core-core repulsion = 28601.298788 eV Total energy + Delta-G solvation = -4005.839914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.96997 -39.66650 -37.32614 -36.89784 -34.95541 -33.57245 -32.43890 -31.81632 -30.45358 -29.96390 -29.75037 -26.70158 -25.63385 -24.31121 -23.61178 -22.76335 -22.47096 -21.43885 -20.56530 -19.80907 -18.66554 -17.55379 -17.17406 -16.50669 -16.39062 -15.80226 -15.37952 -15.06191 -14.68777 -14.47530 -14.41923 -14.07128 -13.84486 -13.60022 -13.48471 -13.35064 -13.12671 -13.11775 -12.80593 -12.70220 -12.21804 -12.11881 -12.05378 -11.70076 -11.61428 -11.33864 -11.04292 -10.95849 -10.86827 -10.71897 -10.68920 -10.63568 -10.57581 -10.36808 -10.28468 -9.82596 -9.45194 -8.62764 -8.55513 -8.33137 -8.00082 -7.90796 -6.43843 -5.49325 -2.68275 1.55448 1.70303 3.29884 3.35066 3.46108 3.58607 3.63218 3.65232 4.00472 4.61616 4.70341 4.75352 4.78993 4.81183 4.90030 4.94043 5.00798 5.15793 5.16292 5.26531 5.32126 5.33215 5.40788 5.51703 5.54138 5.57635 5.62279 5.69282 5.73585 5.78959 5.82084 5.86556 5.95220 5.97985 6.03506 6.06878 6.15594 6.21942 6.27634 6.35246 6.49801 6.56925 6.69363 6.70220 6.79719 6.94451 6.99754 7.27827 7.62200 7.92024 7.96658 8.68881 8.99006 9.80778 10.41202 10.75561 11.74857 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007071 B = 0.006161 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3958.938265 B = 4543.641789 C = 6915.005870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.020 4.020 3 Si 0.899 3.101 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.205 4.205 8 H 0.063 0.937 9 N -0.692 5.692 10 C 0.164 3.836 11 C 0.142 3.858 12 H 0.068 0.932 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.108 3.892 17 N -0.615 5.615 18 C 0.477 3.523 19 O -0.423 6.423 20 C -0.061 4.061 21 H 0.092 0.908 22 C -0.151 4.151 23 C 0.067 3.933 24 O -0.317 6.317 25 C 0.137 3.863 26 C -0.156 4.156 27 C -0.088 4.088 28 C -0.154 4.154 29 C -0.053 4.053 30 C -0.134 4.134 31 H 0.248 0.752 32 H 0.380 0.620 33 H 0.032 0.968 34 H 0.015 0.985 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.126 0.874 48 H 0.124 0.876 49 H 0.120 0.880 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 -18.349 8.982 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.215 4.215 3 Si 0.731 3.269 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.036 3.964 11 C 0.039 3.961 12 H 0.086 0.914 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.015 4.015 17 N -0.354 5.354 18 C 0.260 3.740 19 O -0.289 6.289 20 C -0.082 4.082 21 H 0.109 0.891 22 C -0.189 4.189 23 C -0.008 4.008 24 O -0.231 6.231 25 C 0.092 3.908 26 C -0.175 4.175 27 C -0.106 4.106 28 C -0.173 4.173 29 C -0.071 4.071 30 C -0.135 4.135 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.079 0.921 46 H 0.126 0.874 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.138 0.862 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.378 -17.480 9.019 19.813 hybrid contribution 0.035 0.742 -0.241 0.780 sum -2.342 -16.739 8.779 19.046 Atomic orbital electron populations 1.69650 1.04925 1.24727 1.59573 1.24564 0.95382 0.97059 1.04481 0.86278 0.78682 0.84778 0.77112 1.22282 1.22140 1.21144 1.19115 0.90582 0.84365 1.39673 0.91939 1.42180 1.05233 0.99383 1.86730 1.20797 0.92798 0.85172 0.97640 1.21562 0.93840 0.95216 0.85459 0.91406 1.21979 0.98079 0.94348 1.02147 1.21489 0.98825 0.98256 0.96909 1.21919 1.00009 0.97291 0.98024 1.21653 0.92426 0.85671 1.01791 1.47920 1.45501 1.26141 1.15830 1.20175 0.85133 0.83860 0.84811 1.91292 1.35171 1.24060 1.78336 1.20201 0.95169 0.99952 0.92920 0.89069 1.22206 0.94609 1.04473 0.97566 1.22925 0.94713 0.93301 0.89907 1.85973 1.14833 1.56439 1.65854 1.18604 0.82411 0.96020 0.93733 1.20473 0.93495 1.04659 0.98843 1.20847 0.93488 0.97895 0.98353 1.20951 0.99737 1.00834 0.95729 1.20816 0.92291 0.97281 0.96689 1.19271 0.94566 1.03975 0.95719 0.94193 0.78670 0.95061 0.96701 0.91673 0.90977 0.92097 0.91887 0.91682 0.91299 0.90270 0.91881 0.89681 0.88822 0.92075 0.87432 0.85612 0.85804 0.86190 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.15 13.06 55.49 0.72 -29.42 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 3 Si 0.90 24.29 29.55 -169.99 -5.02 19.27 16 4 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 5 H -0.29 -8.06 7.11 56.52 0.40 -7.65 16 6 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 7 C -0.21 -6.15 9.72 -15.06 -0.15 -6.30 16 8 H 0.06 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.69 -18.50 3.18 -59.91 -0.19 -18.69 16 10 C 0.16 3.50 4.89 -4.04 -0.02 3.48 16 11 C 0.14 2.34 2.93 -67.38 -0.20 2.14 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.13 -1.58 5.37 -26.39 -0.14 -1.72 16 14 C -0.12 -1.15 5.88 -26.69 -0.16 -1.31 16 15 C -0.13 -1.21 6.08 -26.61 -0.16 -1.37 16 16 C 0.11 1.17 6.19 -3.71 -0.02 1.14 16 17 N -0.62 -9.35 2.97 -164.97 -0.49 -9.84 16 18 C 0.48 8.59 5.47 -10.98 -0.06 8.53 16 19 O -0.42 -9.92 8.99 5.55 0.05 -9.87 16 20 C -0.06 -0.91 1.87 -92.86 -0.17 -1.08 16 21 H 0.09 1.09 6.30 -51.92 -0.33 0.76 16 22 C -0.15 -2.10 5.42 -26.49 -0.14 -2.24 16 23 C 0.07 0.79 7.03 37.37 0.26 1.06 16 24 O -0.32 -4.96 10.27 -19.24 -0.20 -5.16 16 25 C 0.14 2.28 6.47 -39.20 -0.25 2.03 16 26 C -0.16 -2.37 9.94 -39.34 -0.39 -2.76 16 27 C -0.09 -1.24 10.04 -39.66 -0.40 -1.64 16 28 C -0.15 -2.33 10.04 -39.61 -0.40 -2.73 16 29 C -0.05 -0.88 8.41 -39.53 -0.33 -1.21 16 30 C -0.13 -2.25 5.11 -104.44 -0.53 -2.78 16 31 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.38 10.85 7.15 -40.82 -0.29 10.55 16 33 H 0.03 0.73 6.42 -51.93 -0.33 0.39 16 34 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.73 5.09 -51.93 -0.26 0.47 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 44 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 48 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 49 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 50 H 0.12 2.00 7.21 -52.48 -0.38 1.62 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -36.17 383.52 -10.59 -46.76 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.88 Total: 8.66 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.36 Total: -7.49 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.05 Total: -57.95 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.15 Total: -15.04 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.02 Total: 19.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.17 -10.59 -46.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.979 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds