Wall clock time and date at job start Wed Apr 1 2020 02:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47179 * 269.99980 * 3 2 1 5 5 H 1.48492 * 109.47222 * 30.00004 * 3 2 1 6 6 H 1.48502 * 109.46929 * 150.00025 * 3 2 1 7 7 C 1.38810 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00331 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99949 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47232 * 185.44623 * 10 9 7 12 12 H 1.09004 * 109.69821 * 47.98914 * 11 10 9 13 13 C 1.53620 * 109.66495 * 168.58237 * 11 10 9 14 14 C 1.53041 * 109.23991 * 174.54966 * 13 11 10 15 15 C 1.53042 * 109.53735 * 298.51361 * 14 13 11 16 16 C 1.53193 * 109.31410 * 61.36795 * 15 14 13 17 17 N 1.46921 * 109.58630 * 287.63872 * 11 10 9 18 18 C 1.34781 * 120.63109 * 6.62601 * 17 11 10 19 19 O 1.21286 * 120.00019 * 4.75764 * 18 17 11 20 20 C 1.50697 * 120.00216 * 184.75769 * 18 17 11 21 21 H 1.09008 * 109.39550 * 31.99132 * 20 18 17 22 22 C 1.53070 * 109.42332 * 272.09372 * 20 18 17 23 23 C 1.53405 * 108.31536 * 191.75970 * 22 20 18 24 24 O 1.42827 * 108.37934 * 64.66857 * 23 22 20 25 25 C 1.35841 * 117.83827 * 310.69785 * 24 23 22 26 26 C 1.39148 * 118.49717 * 197.28180 * 25 24 23 27 27 C 1.37967 * 120.21430 * 180.41808 * 26 25 24 28 28 C 1.38291 * 119.95517 * 0.02562 * 27 26 25 29 29 C 1.38108 * 119.98661 * 359.90469 * 28 27 26 30 30 C 1.38366 * 121.80286 * 17.52941 * 25 24 23 31 31 H 0.97000 * 119.99423 * 359.97438 * 1 2 3 32 32 H 0.96997 * 119.99700 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47430 * 65.44464 * 10 9 7 34 34 H 1.09005 * 109.47159 * 305.44236 * 10 9 7 35 35 H 1.08998 * 109.63120 * 54.56322 * 13 11 10 36 36 H 1.08996 * 109.43716 * 294.41505 * 13 11 10 37 37 H 1.08998 * 109.46046 * 178.49195 * 14 13 11 38 38 H 1.08997 * 109.46271 * 58.53450 * 14 13 11 39 39 H 1.08998 * 109.49543 * 301.41016 * 15 14 13 40 40 H 1.09006 * 109.52126 * 181.33151 * 15 14 13 41 41 H 1.08998 * 109.58496 * 185.57944 * 16 15 14 42 42 H 1.08998 * 109.70221 * 65.22024 * 16 15 14 43 43 H 1.08997 * 109.69387 * 72.04918 * 22 20 18 44 44 H 1.09000 * 109.69734 * 311.46171 * 22 20 18 45 45 H 1.09007 * 109.68246 * 304.94281 * 23 22 20 46 46 H 1.08998 * 109.71453 * 184.41015 * 23 22 20 47 47 H 1.08007 * 119.89452 * 0.39410 * 26 25 24 48 48 H 1.07999 * 120.02715 * 179.97438 * 27 26 25 49 49 H 1.08006 * 120.00556 * 179.87615 * 28 27 26 50 50 H 1.08004 * 119.84257 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0694 -4.8165 -0.1355 12 1 0.3741 -4.6124 -0.9498 13 6 1.8350 -6.1174 -0.4208 14 6 0.8528 -7.2910 -0.4211 15 6 0.1975 -7.4104 0.9568 16 6 -0.5825 -6.1272 1.2598 17 7 0.3235 -4.9790 1.1198 18 6 0.4634 -4.0886 2.1219 19 8 1.1427 -3.0967 1.9614 20 6 -0.2244 -4.3253 3.4417 21 1 -0.2864 -5.3971 3.6305 22 6 -1.6353 -3.7337 3.3939 23 6 -2.2012 -3.7206 4.8197 24 8 -1.4111 -2.8307 5.6096 25 6 -0.0606 -2.9696 5.5623 26 6 0.7025 -2.3855 6.5686 27 6 2.0775 -2.4971 6.5507 28 6 2.7008 -3.1910 5.5297 29 6 1.9464 -3.7732 4.5300 30 6 0.5655 -3.6668 4.5442 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6087 -3.7576 0.9368 34 1 2.7563 -3.6739 -0.8351 35 1 2.5896 -6.2748 0.3499 36 1 2.3185 -6.0475 -1.3951 37 1 1.3881 -8.2125 -0.6497 38 1 0.0843 -7.1212 -1.1752 39 1 0.9675 -7.5556 1.7144 40 1 -0.4844 -8.2608 0.9634 41 1 -0.9684 -6.1661 2.2784 42 1 -1.4110 -6.0265 0.5587 43 1 -2.2689 -4.3464 2.7527 44 1 -1.5940 -2.7159 3.0058 45 1 -2.1562 -4.7246 5.2418 46 1 -3.2351 -3.3760 4.8018 47 1 0.2168 -1.8427 7.3662 48 1 2.6669 -2.0423 7.3331 49 1 3.7773 -3.2772 5.5138 50 1 2.4356 -4.3142 3.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266880130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:40 Heat of formation + Delta-G solvation = -16.588472 kcal Electronic energy + Delta-G solvation = -32608.127509 eV Core-core repulsion = 28601.298788 eV Total energy + Delta-G solvation = -4006.828721 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.18672 -40.89924 -38.46949 -38.09452 -36.61530 -35.15060 -33.58724 -33.46223 -31.57511 -31.48401 -31.12515 -28.00329 -27.11718 -25.66781 -24.75610 -24.31297 -23.78037 -22.82459 -21.67652 -20.91266 -19.97233 -19.12422 -18.67835 -17.88565 -17.61305 -17.01501 -16.69527 -16.54576 -16.16206 -15.76941 -15.46462 -15.33897 -15.18802 -15.04457 -14.92979 -14.63964 -14.45492 -14.27989 -14.20100 -13.87006 -13.71785 -13.46957 -13.27608 -13.10275 -12.85966 -12.79261 -12.66825 -12.49166 -12.18061 -12.08145 -12.03447 -11.86066 -11.74956 -11.69892 -11.53058 -11.44352 -11.32266 -10.84037 -9.87517 -9.69482 -9.35466 -9.09538 -8.60213 -7.84392 -5.01083 0.37195 0.49590 1.39146 1.42611 1.49970 1.96371 2.13648 2.39415 2.59849 2.81723 3.46845 3.48793 3.62863 3.71232 3.76663 3.84366 3.94590 4.00080 4.10543 4.15222 4.19507 4.22205 4.35603 4.39382 4.43042 4.48703 4.50453 4.54088 4.56888 4.65138 4.67671 4.76888 4.87198 4.90891 5.01721 5.02899 5.06036 5.10702 5.15307 5.16514 5.26299 5.31569 5.34278 5.49717 5.50756 5.53999 5.60843 5.86108 5.88760 6.36584 6.48712 6.70162 7.43371 7.64301 8.25434 8.47644 9.40387 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007071 B = 0.006161 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3958.938265 B = 4543.641789 C = 6915.005870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.084 4.084 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.205 4.205 8 H 0.058 0.942 9 N -0.697 5.697 10 C 0.167 3.833 11 C 0.148 3.852 12 H 0.057 0.943 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.612 5.612 18 C 0.476 3.524 19 O -0.491 6.491 20 C -0.054 4.054 21 H 0.128 0.872 22 C -0.144 4.144 23 C 0.064 3.936 24 O -0.334 6.334 25 C 0.119 3.881 26 C -0.168 4.168 27 C -0.086 4.086 28 C -0.165 4.165 29 C -0.072 4.072 30 C -0.154 4.154 31 H 0.242 0.758 32 H 0.367 0.633 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.038 0.962 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.143 0.857 48 H 0.157 0.843 49 H 0.137 0.863 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -21.063 9.891 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.338 4.338 8 H 0.076 0.924 9 N -0.337 5.337 10 C 0.040 3.960 11 C 0.044 3.956 12 H 0.075 0.925 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.349 5.349 18 C 0.262 3.738 19 O -0.362 6.362 20 C -0.075 4.075 21 H 0.146 0.854 22 C -0.182 4.182 23 C -0.010 4.010 24 O -0.248 6.248 25 C 0.074 3.926 26 C -0.186 4.186 27 C -0.104 4.104 28 C -0.184 4.184 29 C -0.090 4.090 30 C -0.155 4.155 31 H 0.051 0.949 32 H 0.198 0.802 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.057 0.943 45 H 0.113 0.887 46 H 0.150 0.850 47 H 0.161 0.839 48 H 0.174 0.826 49 H 0.155 0.845 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.973 -20.283 9.912 22.770 hybrid contribution 0.242 1.486 -0.505 1.588 sum -2.731 -18.797 9.407 21.196 Atomic orbital electron populations 1.69815 1.06244 1.24828 1.61609 1.25293 0.96295 1.00210 1.05735 0.85285 0.77451 0.80707 0.77357 1.21191 1.22669 1.20529 1.19428 0.90582 0.85960 1.37834 0.92384 1.42235 1.04587 1.00307 1.86588 1.20835 0.93716 0.85198 0.96262 1.21394 0.93039 0.95324 0.85848 0.92526 1.21919 0.98313 0.93232 1.02212 1.21492 0.98340 0.97506 0.97714 1.21906 1.00311 0.97053 0.97269 1.22044 0.92100 0.84684 1.03477 1.48048 1.45470 1.26813 1.14532 1.20791 0.83782 0.83165 0.86049 1.91250 1.38306 1.26783 1.79910 1.20222 0.94935 1.01937 0.90438 0.85426 1.22151 0.94815 1.01649 0.99626 1.23253 0.95034 0.94740 0.87975 1.85940 1.14565 1.57743 1.66573 1.18875 0.83091 0.96361 0.94273 1.20853 0.94118 1.04521 0.99139 1.21227 0.93480 0.97033 0.98624 1.21261 1.00716 1.00698 0.95682 1.20886 0.92785 0.98300 0.97058 1.19519 0.94863 1.04685 0.96425 0.94917 0.80161 0.96725 0.97042 0.92022 0.90484 0.89846 0.91502 0.91802 0.88000 0.88187 0.90911 0.86588 0.94338 0.88719 0.85013 0.83909 0.82579 0.84519 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.99 13.06 21.65 0.28 -64.71 16 2 C -0.08 -5.38 5.50 84.86 0.47 -4.92 16 3 Si 0.96 51.59 29.55 68.60 2.03 53.62 16 4 H -0.28 -14.66 7.11 99.48 0.71 -13.96 16 5 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 6 H -0.28 -14.54 7.11 99.48 0.71 -13.84 16 7 C -0.20 -12.79 9.72 84.03 0.82 -11.98 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.70 -39.08 3.18 -343.45 -1.09 -40.17 16 10 C 0.17 7.45 4.89 86.38 0.42 7.88 16 11 C 0.15 4.89 2.93 45.12 0.13 5.02 16 12 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 13 C -0.12 -2.78 5.37 30.82 0.17 -2.62 16 14 C -0.11 -1.83 5.88 30.62 0.18 -1.65 16 15 C -0.13 -1.78 6.08 30.67 0.19 -1.59 16 16 C 0.10 1.83 6.19 86.36 0.53 2.36 16 17 N -0.61 -18.26 2.97 -794.22 -2.36 -20.62 16 18 C 0.48 17.57 5.47 87.66 0.48 18.05 16 19 O -0.49 -24.37 8.99 -3.05 -0.03 -24.40 16 20 C -0.05 -1.59 1.87 -12.24 -0.02 -1.61 16 21 H 0.13 2.70 6.30 -2.38 -0.02 2.69 16 22 C -0.14 -3.93 5.42 30.75 0.17 -3.76 16 23 C 0.06 1.40 7.03 72.12 0.51 1.91 16 24 O -0.33 -10.26 10.27 -91.77 -0.94 -11.20 16 25 C 0.12 3.96 6.47 22.52 0.15 4.10 16 26 C -0.17 -5.02 9.94 22.42 0.22 -4.80 16 27 C -0.09 -2.36 10.04 22.22 0.22 -2.14 16 28 C -0.17 -5.02 10.04 22.25 0.22 -4.80 16 29 C -0.07 -2.48 8.41 22.30 0.19 -2.29 16 30 C -0.15 -5.21 5.11 -19.75 -0.10 -5.31 16 31 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.37 22.10 7.15 -92.71 -0.66 21.43 16 33 H 0.02 0.73 6.42 -2.39 -0.02 0.71 16 34 H 0.01 0.53 8.10 -2.38 -0.02 0.51 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.10 1.44 5.09 -2.39 -0.01 1.42 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.12 2.33 7.72 -2.39 -0.02 2.31 16 44 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 45 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 46 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 48 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 49 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 50 H 0.11 3.81 7.21 -2.91 -0.02 3.78 16 Total: -1.00 -84.94 383.52 3.11 -81.83 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.28 Total: 33.80 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 4.94 Total: -8.14 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -3.16 Total: -125.49 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.97 Total: -35.60 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.03 Total: 53.62 kcal Total: -84.94 3.11 -81.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.238 kcal (2) G-P(sol) polarization free energy of solvation -84.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds