Wall clock time and date at job start Wed Apr 1 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48503 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47129 * 299.99937 * 3 2 1 6 6 H 1.48493 * 109.47249 * 60.00247 * 3 2 1 7 7 C 1.38817 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99969 * 359.72157 * 7 2 1 10 10 C 1.46500 * 119.99739 * 180.27326 * 9 7 2 11 11 C 1.53003 * 109.46866 * 174.90865 * 10 9 7 12 12 H 1.08993 * 109.58525 * 308.47150 * 11 10 9 13 13 C 1.53189 * 109.58841 * 188.18060 * 11 10 9 14 14 C 1.53066 * 109.29528 * 185.72166 * 13 11 10 15 15 C 1.53036 * 109.65662 * 61.15829 * 14 13 11 16 16 C 1.53192 * 109.31375 * 298.69608 * 15 14 13 17 17 N 1.46918 * 108.77346 * 54.63757 * 16 15 14 18 18 C 1.34775 * 120.63157 * 126.37639 * 17 16 15 19 19 O 1.21284 * 120.00041 * 185.71204 * 18 17 16 20 20 C 1.50699 * 119.99965 * 5.70277 * 18 17 16 21 21 H 1.09001 * 109.44026 * 329.96388 * 20 18 17 22 22 C 1.53073 * 109.43822 * 210.09265 * 20 18 17 23 23 C 1.53407 * 108.30265 * 191.74238 * 22 20 18 24 24 O 1.42832 * 108.37089 * 64.71042 * 23 22 20 25 25 C 1.35837 * 117.85960 * 310.79615 * 24 23 22 26 26 C 1.39150 * 118.49872 * 196.97839 * 25 24 23 27 27 C 1.37967 * 120.21659 * 180.43940 * 26 25 24 28 28 C 1.38284 * 119.95625 * 359.96256 * 27 26 25 29 29 C 1.38103 * 119.98656 * 359.92997 * 28 27 26 30 30 C 1.38373 * 121.80609 * 17.25769 * 25 24 23 31 31 H 0.96996 * 120.00251 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99973 * 0.27706 * 9 7 2 33 33 H 1.09000 * 109.47301 * 294.91425 * 10 9 7 34 34 H 1.08996 * 109.46590 * 54.91604 * 10 9 7 35 35 H 1.09001 * 109.49690 * 305.53462 * 13 11 10 36 36 H 1.09003 * 109.49459 * 65.62714 * 13 11 10 37 37 H 1.08998 * 109.34916 * 301.13041 * 14 13 11 38 38 H 1.09001 * 109.44081 * 181.23457 * 14 13 11 39 39 H 1.09007 * 109.49784 * 178.74816 * 15 14 13 40 40 H 1.08998 * 109.50539 * 58.65289 * 15 14 13 41 41 H 1.09009 * 109.58284 * 294.84757 * 16 15 14 42 42 H 1.08999 * 109.70587 * 174.49967 * 16 15 14 43 43 H 1.08998 * 109.69482 * 311.44686 * 22 20 18 44 44 H 1.09002 * 109.69592 * 72.03819 * 22 20 18 45 45 H 1.08992 * 109.68175 * 304.99329 * 23 22 20 46 46 H 1.08996 * 109.71552 * 184.44789 * 23 22 20 47 47 H 1.08004 * 119.88679 * 0.43643 * 26 25 24 48 48 H 1.08003 * 120.01625 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.00501 * 179.91821 * 28 27 26 50 50 H 1.08004 * 119.84480 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 0.0047 10 6 2.0582 -3.6568 0.0102 11 6 1.0688 -4.8163 0.1433 12 1 0.4096 -4.6384 0.9929 13 6 1.8367 -6.1250 0.3543 14 6 0.8519 -7.2967 0.3437 15 6 0.1436 -7.3617 -1.0113 16 6 -0.6437 -6.0666 -1.2342 17 7 0.2704 -4.9260 -1.0852 18 6 0.3748 -3.9982 -2.0571 19 8 1.2060 -3.1193 -1.9698 20 6 -0.5412 -4.0528 -3.2526 21 1 -0.8135 -5.0889 -3.4538 22 6 0.1774 -3.4700 -4.4720 23 6 -0.8559 -3.2638 -5.5870 24 8 -1.7934 -2.2767 -5.1550 25 6 -2.3445 -2.4212 -3.9219 26 6 -3.4978 -1.7029 -3.6217 27 6 -4.0820 -1.8161 -2.3770 28 6 -3.5211 -2.6462 -1.4238 29 6 -2.3777 -3.3623 -1.7189 30 6 -1.7870 -3.2531 -2.9670 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0047 33 1 2.6147 -3.7591 -0.9214 34 1 2.7514 -3.6723 0.8511 35 1 2.5621 -6.2547 -0.4489 36 1 2.3559 -6.0917 1.3121 37 1 0.1136 -7.1549 1.1330 38 1 1.3931 -8.2271 0.5155 39 1 -0.5407 -8.2101 -1.0238 40 1 0.8833 -7.4787 -1.8033 41 1 -1.4429 -5.9933 -0.4965 42 1 -1.0708 -6.0641 -2.2370 43 1 0.6302 -2.5139 -4.2093 44 1 0.9489 -4.1622 -4.8094 45 1 -1.3750 -4.2016 -5.7845 46 1 -0.3556 -2.9231 -6.4935 47 1 -3.9371 -1.0547 -4.3656 48 1 -4.9770 -1.2568 -2.1473 49 1 -3.9770 -2.7344 -0.4487 50 1 -1.9418 -4.0103 -0.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266880136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:44 Heat of formation + Delta-G solvation = 8.899294 kcal Electronic energy + Delta-G solvation = -32956.999269 eV Core-core repulsion = 28951.275781 eV Total energy + Delta-G solvation = -4005.723488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.94682 -39.62118 -37.18077 -36.95363 -34.90702 -33.52362 -32.46816 -31.82363 -30.33464 -29.88027 -29.73611 -26.63990 -25.62151 -24.32814 -23.55590 -22.76109 -22.30171 -21.40000 -20.59889 -19.74770 -18.48970 -17.74820 -16.93005 -16.45441 -16.31127 -15.81896 -15.53643 -14.87573 -14.66883 -14.48819 -14.42654 -14.06241 -13.76865 -13.60905 -13.39716 -13.30260 -13.06723 -13.00793 -12.79650 -12.44955 -12.22662 -12.16305 -12.04375 -11.69495 -11.55633 -11.21541 -10.98504 -10.96736 -10.77615 -10.70145 -10.67716 -10.61207 -10.45290 -10.26464 -10.23757 -9.79447 -9.45396 -8.72248 -8.56287 -8.17640 -8.02926 -7.76309 -6.44341 -5.48027 -2.68335 1.64830 1.81429 3.33407 3.39090 3.53506 3.58495 3.62993 3.65140 4.10607 4.68330 4.73029 4.78289 4.83434 4.84753 4.96067 4.97019 5.06686 5.18565 5.22319 5.34683 5.38395 5.39912 5.44979 5.52921 5.61222 5.65983 5.72870 5.78975 5.81774 5.83595 5.85469 5.88190 5.97493 6.02495 6.08064 6.10824 6.17634 6.33042 6.36848 6.41669 6.58438 6.60857 6.70453 6.77523 6.90508 6.97340 7.11088 7.31326 7.71870 7.93456 7.97947 8.68728 8.99182 9.80512 10.40296 10.74728 11.74913 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007268 B = 0.006599 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.510377 B = 4242.094648 C = 6490.218963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.018 4.018 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.210 4.210 8 H 0.063 0.937 9 N -0.695 5.695 10 C 0.161 3.839 11 C 0.142 3.858 12 H 0.067 0.933 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.133 4.133 16 C 0.106 3.894 17 N -0.617 5.617 18 C 0.484 3.516 19 O -0.433 6.433 20 C -0.061 4.061 21 H 0.091 0.909 22 C -0.147 4.147 23 C 0.066 3.934 24 O -0.318 6.318 25 C 0.138 3.862 26 C -0.152 4.152 27 C -0.084 4.084 28 C -0.142 4.142 29 C -0.069 4.069 30 C -0.140 4.140 31 H 0.248 0.752 32 H 0.380 0.620 33 H 0.039 0.961 34 H 0.013 0.987 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.336 -17.236 -6.779 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.213 4.213 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.342 4.342 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.033 3.967 11 C 0.039 3.961 12 H 0.085 0.915 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.018 4.018 17 N -0.355 5.355 18 C 0.269 3.731 19 O -0.299 6.299 20 C -0.082 4.082 21 H 0.109 0.891 22 C -0.185 4.185 23 C -0.009 4.009 24 O -0.232 6.232 25 C 0.093 3.907 26 C -0.171 4.171 27 C -0.103 4.103 28 C -0.160 4.160 29 C -0.088 4.088 30 C -0.141 4.141 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.712 -16.425 -6.889 18.705 hybrid contribution 0.204 0.783 0.154 0.824 sum -5.507 -15.642 -6.735 17.899 Atomic orbital electron populations 1.69662 1.04746 1.24607 1.59016 1.24590 0.95403 0.97006 1.04344 0.86233 0.78723 0.85163 0.76882 1.20942 1.22329 1.22381 1.19137 0.90626 0.84290 1.40137 0.91867 1.42233 1.05310 0.99587 1.86682 1.20889 0.92925 0.84970 0.97916 1.21479 0.93070 0.95467 0.86072 0.91549 1.21906 0.98075 0.94280 1.02295 1.21491 0.98610 0.98263 0.97104 1.21909 0.99789 0.97211 0.98235 1.21713 0.92246 0.85746 1.02046 1.47890 1.43740 1.25067 1.18816 1.20016 0.86692 0.82278 0.84160 1.91124 1.33001 1.32107 1.73701 1.20211 0.93185 0.99306 0.95482 0.89135 1.22153 0.97980 1.04472 0.93859 1.22915 0.89401 0.91290 0.97295 1.85962 1.57398 1.49316 1.30490 1.18578 0.92301 0.95627 0.84179 1.20460 0.95216 1.03036 0.98390 1.20833 0.99427 0.97500 0.92493 1.20913 0.97299 0.98569 0.99256 1.20972 0.94563 0.98444 0.94780 1.19287 0.97004 1.02609 0.95213 0.94206 0.78660 0.94313 0.96969 0.91646 0.90972 0.91913 0.92100 0.91254 0.91667 0.91916 0.90023 0.88320 0.90063 0.92262 0.87610 0.85727 0.85855 0.86194 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.68 13.06 55.49 0.72 -28.95 16 2 C -0.02 -0.57 5.50 -17.43 -0.10 -0.66 16 3 Si 0.90 24.19 29.55 -169.99 -5.02 19.17 16 4 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 5 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 7 C -0.21 -6.29 9.70 -15.06 -0.15 -6.43 16 8 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -18.60 3.21 -59.91 -0.19 -18.80 16 10 C 0.16 3.47 4.87 -4.04 -0.02 3.45 16 11 C 0.14 2.36 2.93 -67.60 -0.20 2.16 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.13 -1.60 5.38 -26.60 -0.14 -1.75 16 14 C -0.12 -1.16 5.88 -26.68 -0.16 -1.32 16 15 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 16 C 0.11 1.19 5.00 -3.71 -0.02 1.17 16 17 N -0.62 -9.53 2.38 -165.22 -0.39 -9.92 16 18 C 0.48 8.96 5.25 -10.99 -0.06 8.90 16 19 O -0.43 -10.27 9.70 5.55 0.05 -10.22 16 20 C -0.06 -0.94 2.16 -92.85 -0.20 -1.15 16 21 H 0.09 1.12 5.75 -51.93 -0.30 0.82 16 22 C -0.15 -2.20 5.30 -26.48 -0.14 -2.34 16 23 C 0.07 0.84 7.03 37.37 0.26 1.10 16 24 O -0.32 -5.25 10.27 -19.23 -0.20 -5.44 16 25 C 0.14 2.43 6.47 -39.19 -0.25 2.17 16 26 C -0.15 -2.50 9.94 -39.34 -0.39 -2.89 16 27 C -0.08 -1.31 10.04 -39.66 -0.40 -1.71 16 28 C -0.14 -2.32 10.04 -39.61 -0.40 -2.72 16 29 C -0.07 -1.20 8.97 -39.53 -0.35 -1.55 16 30 C -0.14 -2.43 5.43 -104.44 -0.57 -3.00 16 31 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.38 10.80 7.00 -40.82 -0.29 10.51 16 33 H 0.04 0.91 6.37 -51.93 -0.33 0.58 16 34 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.68 7.60 -51.92 -0.39 0.28 16 42 H 0.08 0.83 5.28 -51.93 -0.27 0.56 16 43 H 0.10 1.90 7.44 -51.93 -0.39 1.52 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 48 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 49 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 50 H 0.12 2.06 4.96 -52.48 -0.26 1.79 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -35.97 379.70 -10.44 -46.41 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.70 Total: 9.97 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -3.44 Total: -7.93 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.14 Total: -57.67 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.14 Total: -15.66 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.02 Total: 19.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.97 -10.44 -46.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.308 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds