Wall clock time and date at job start Wed Apr 1 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48503 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47129 * 299.99937 * 3 2 1 6 6 H 1.48493 * 109.47249 * 60.00247 * 3 2 1 7 7 C 1.38817 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99969 * 359.72157 * 7 2 1 10 10 C 1.46500 * 119.99739 * 180.27326 * 9 7 2 11 11 C 1.53003 * 109.46866 * 174.90865 * 10 9 7 12 12 H 1.08993 * 109.58525 * 308.47150 * 11 10 9 13 13 C 1.53189 * 109.58841 * 188.18060 * 11 10 9 14 14 C 1.53066 * 109.29528 * 185.72166 * 13 11 10 15 15 C 1.53036 * 109.65662 * 61.15829 * 14 13 11 16 16 C 1.53192 * 109.31375 * 298.69608 * 15 14 13 17 17 N 1.46918 * 108.77346 * 54.63757 * 16 15 14 18 18 C 1.34775 * 120.63157 * 126.37639 * 17 16 15 19 19 O 1.21284 * 120.00041 * 185.71204 * 18 17 16 20 20 C 1.50699 * 119.99965 * 5.70277 * 18 17 16 21 21 H 1.09001 * 109.44026 * 329.96388 * 20 18 17 22 22 C 1.53073 * 109.43822 * 210.09265 * 20 18 17 23 23 C 1.53407 * 108.30265 * 191.74238 * 22 20 18 24 24 O 1.42832 * 108.37089 * 64.71042 * 23 22 20 25 25 C 1.35837 * 117.85960 * 310.79615 * 24 23 22 26 26 C 1.39150 * 118.49872 * 196.97839 * 25 24 23 27 27 C 1.37967 * 120.21659 * 180.43940 * 26 25 24 28 28 C 1.38284 * 119.95625 * 359.96256 * 27 26 25 29 29 C 1.38103 * 119.98656 * 359.92997 * 28 27 26 30 30 C 1.38373 * 121.80609 * 17.25769 * 25 24 23 31 31 H 0.96996 * 120.00251 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99973 * 0.27706 * 9 7 2 33 33 H 1.09000 * 109.47301 * 294.91425 * 10 9 7 34 34 H 1.08996 * 109.46590 * 54.91604 * 10 9 7 35 35 H 1.09001 * 109.49690 * 305.53462 * 13 11 10 36 36 H 1.09003 * 109.49459 * 65.62714 * 13 11 10 37 37 H 1.08998 * 109.34916 * 301.13041 * 14 13 11 38 38 H 1.09001 * 109.44081 * 181.23457 * 14 13 11 39 39 H 1.09007 * 109.49784 * 178.74816 * 15 14 13 40 40 H 1.08998 * 109.50539 * 58.65289 * 15 14 13 41 41 H 1.09009 * 109.58284 * 294.84757 * 16 15 14 42 42 H 1.08999 * 109.70587 * 174.49967 * 16 15 14 43 43 H 1.08998 * 109.69482 * 311.44686 * 22 20 18 44 44 H 1.09002 * 109.69592 * 72.03819 * 22 20 18 45 45 H 1.08992 * 109.68175 * 304.99329 * 23 22 20 46 46 H 1.08996 * 109.71552 * 184.44789 * 23 22 20 47 47 H 1.08004 * 119.88679 * 0.43643 * 26 25 24 48 48 H 1.08003 * 120.01625 * 179.97438 * 27 26 25 49 49 H 1.08001 * 120.00501 * 179.91821 * 28 27 26 50 50 H 1.08004 * 119.84480 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 0.0047 10 6 2.0582 -3.6568 0.0102 11 6 1.0688 -4.8163 0.1433 12 1 0.4096 -4.6384 0.9929 13 6 1.8367 -6.1250 0.3543 14 6 0.8519 -7.2967 0.3437 15 6 0.1436 -7.3617 -1.0113 16 6 -0.6437 -6.0666 -1.2342 17 7 0.2704 -4.9260 -1.0852 18 6 0.3748 -3.9982 -2.0571 19 8 1.2060 -3.1193 -1.9698 20 6 -0.5412 -4.0528 -3.2526 21 1 -0.8135 -5.0889 -3.4538 22 6 0.1774 -3.4700 -4.4720 23 6 -0.8559 -3.2638 -5.5870 24 8 -1.7934 -2.2767 -5.1550 25 6 -2.3445 -2.4212 -3.9219 26 6 -3.4978 -1.7029 -3.6217 27 6 -4.0820 -1.8161 -2.3770 28 6 -3.5211 -2.6462 -1.4238 29 6 -2.3777 -3.3623 -1.7189 30 6 -1.7870 -3.2531 -2.9670 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0047 33 1 2.6147 -3.7591 -0.9214 34 1 2.7514 -3.6723 0.8511 35 1 2.5621 -6.2547 -0.4489 36 1 2.3559 -6.0917 1.3121 37 1 0.1136 -7.1549 1.1330 38 1 1.3931 -8.2271 0.5155 39 1 -0.5407 -8.2101 -1.0238 40 1 0.8833 -7.4787 -1.8033 41 1 -1.4429 -5.9933 -0.4965 42 1 -1.0708 -6.0641 -2.2370 43 1 0.6302 -2.5139 -4.2093 44 1 0.9489 -4.1622 -4.8094 45 1 -1.3750 -4.2016 -5.7845 46 1 -0.3556 -2.9231 -6.4935 47 1 -3.9371 -1.0547 -4.3656 48 1 -4.9770 -1.2568 -2.1473 49 1 -3.9770 -2.7344 -0.4487 50 1 -1.9418 -4.0103 -0.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266880136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:43 Heat of formation + Delta-G solvation = -13.339942 kcal Electronic energy + Delta-G solvation = -32957.963634 eV Core-core repulsion = 28951.275781 eV Total energy + Delta-G solvation = -4006.687854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.22454 -40.89769 -38.40195 -38.18668 -36.59469 -35.13145 -33.61560 -33.49172 -31.56392 -31.45024 -31.11280 -27.98984 -27.10777 -25.73344 -24.73502 -24.32248 -23.71396 -22.79978 -21.73847 -20.91817 -19.82021 -19.22227 -18.72239 -17.70549 -17.63034 -17.06005 -16.81953 -16.65430 -15.99599 -15.81999 -15.49212 -15.41577 -15.21116 -15.03196 -14.85062 -14.65554 -14.48834 -14.22778 -14.13616 -13.81122 -13.63933 -13.55010 -13.31524 -13.11272 -12.86823 -12.78700 -12.68081 -12.43994 -12.13371 -12.02313 -11.99207 -11.86600 -11.74883 -11.68301 -11.51217 -11.35320 -11.30779 -10.87546 -10.01897 -9.56238 -9.42864 -9.03712 -8.59132 -7.81920 -5.00330 0.38576 0.53108 1.39364 1.41984 1.50575 1.95142 2.13191 2.40238 2.59981 2.84336 3.48809 3.50831 3.65254 3.71803 3.76563 3.85231 3.92822 3.99817 4.13292 4.15256 4.22257 4.24132 4.35287 4.39412 4.41898 4.49579 4.54290 4.56962 4.59758 4.63787 4.69571 4.82150 4.89260 4.93237 5.00896 5.06863 5.08453 5.13618 5.16562 5.18523 5.26681 5.34898 5.36188 5.50584 5.51538 5.55135 5.63943 5.86562 5.90598 6.37337 6.50772 6.67327 7.44293 7.60288 8.25339 8.48192 9.41130 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007268 B = 0.006599 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3851.510377 B = 4242.094648 C = 6490.218963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.080 4.080 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.303 1.303 6 H -0.291 1.291 7 C -0.211 4.211 8 H 0.058 0.942 9 N -0.701 5.701 10 C 0.163 3.837 11 C 0.147 3.853 12 H 0.058 0.942 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.126 4.126 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.486 3.514 19 O -0.500 6.500 20 C -0.056 4.056 21 H 0.130 0.870 22 C -0.144 4.144 23 C 0.065 3.935 24 O -0.334 6.334 25 C 0.119 3.881 26 C -0.167 4.167 27 C -0.086 4.086 28 C -0.157 4.157 29 C -0.085 4.085 30 C -0.156 4.156 31 H 0.241 0.759 32 H 0.368 0.632 33 H 0.021 0.979 34 H 0.009 0.991 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.140 0.860 48 H 0.152 0.848 49 H 0.135 0.865 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -19.951 -7.340 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.271 4.271 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.219 1.219 7 C -0.344 4.344 8 H 0.076 0.924 9 N -0.341 5.341 10 C 0.036 3.964 11 C 0.044 3.956 12 H 0.076 0.924 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.164 4.164 16 C -0.024 4.024 17 N -0.347 5.347 18 C 0.272 3.728 19 O -0.371 6.371 20 C -0.077 4.077 21 H 0.147 0.853 22 C -0.182 4.182 23 C -0.009 4.009 24 O -0.249 6.249 25 C 0.074 3.926 26 C -0.185 4.185 27 C -0.104 4.104 28 C -0.175 4.175 29 C -0.103 4.103 30 C -0.157 4.157 31 H 0.050 0.950 32 H 0.200 0.800 33 H 0.039 0.961 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.158 0.842 48 H 0.170 0.830 49 H 0.153 0.847 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.459 -19.226 -7.437 21.602 hybrid contribution 0.463 1.535 0.299 1.631 sum -5.996 -17.691 -7.138 19.997 Atomic orbital electron populations 1.69822 1.05951 1.24641 1.60895 1.25289 0.96331 1.00017 1.05487 0.85254 0.78114 0.81243 0.76392 1.19760 1.23089 1.21854 1.19426 0.90578 0.85901 1.38503 0.92444 1.42274 1.04722 1.00438 1.86708 1.20921 0.93885 0.85080 0.96495 1.21332 0.92372 0.95578 0.86330 0.92383 1.21850 0.98302 0.93093 1.02458 1.21493 0.98151 0.97591 0.97762 1.21897 1.00052 0.96732 0.97714 1.22063 0.91991 0.85033 1.03273 1.47997 1.43632 1.25606 1.17502 1.20614 0.85774 0.81528 0.84912 1.91099 1.35798 1.34625 1.75626 1.20260 0.91922 1.01290 0.94231 0.85281 1.22097 0.99121 1.02272 0.94670 1.23228 0.88519 0.92288 0.96910 1.85928 1.58036 1.50865 1.30047 1.18866 0.92954 0.95958 0.84810 1.20817 0.95280 1.03165 0.99248 1.21202 1.00173 0.97100 0.91920 1.21237 0.97357 0.98664 1.00253 1.21127 0.95166 0.99145 0.94907 1.19492 0.97571 1.03216 0.95438 0.94972 0.79994 0.96096 0.97296 0.92079 0.90331 0.91442 0.89755 0.88036 0.91655 0.91032 0.88587 0.93628 0.87624 0.88952 0.85170 0.84202 0.83005 0.84689 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.45 13.06 21.65 0.28 -63.17 16 2 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 3 Si 0.96 51.33 29.55 68.60 2.03 53.36 16 4 H -0.27 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.30 -16.44 7.11 99.48 0.71 -15.73 16 6 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 7 C -0.21 -13.13 9.70 84.03 0.82 -12.32 16 8 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.70 -39.14 3.21 -343.44 -1.10 -40.24 16 10 C 0.16 7.31 4.87 86.38 0.42 7.73 16 11 C 0.15 4.88 2.93 44.97 0.13 5.01 16 12 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 13 C -0.12 -2.79 5.38 30.68 0.16 -2.63 16 14 C -0.11 -1.82 5.88 30.63 0.18 -1.64 16 15 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 16 C 0.10 1.93 5.00 86.36 0.43 2.36 16 17 N -0.61 -18.48 2.38 -795.03 -1.89 -20.37 16 18 C 0.49 18.24 5.25 87.66 0.46 18.70 16 19 O -0.50 -24.92 9.70 -3.04 -0.03 -24.95 16 20 C -0.06 -1.72 2.16 -12.24 -0.03 -1.75 16 21 H 0.13 2.84 5.75 -2.39 -0.01 2.83 16 22 C -0.14 -4.28 5.30 30.76 0.16 -4.12 16 23 C 0.06 1.54 7.03 72.12 0.51 2.05 16 24 O -0.33 -10.92 10.27 -91.72 -0.94 -11.86 16 25 C 0.12 4.19 6.47 22.52 0.15 4.34 16 26 C -0.17 -5.42 9.94 22.42 0.22 -5.20 16 27 C -0.09 -2.62 10.04 22.22 0.22 -2.39 16 28 C -0.16 -5.09 10.04 22.25 0.22 -4.87 16 29 C -0.09 -2.95 8.97 22.30 0.20 -2.75 16 30 C -0.16 -5.42 5.43 -19.75 -0.11 -5.52 16 31 H 0.24 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.37 21.92 7.00 -92.71 -0.65 21.27 16 33 H 0.02 1.04 6.37 -2.39 -0.02 1.03 16 34 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.34 7.60 -2.38 -0.02 1.32 16 42 H 0.10 1.62 5.28 -2.39 -0.01 1.61 16 43 H 0.04 1.86 7.44 -2.39 -0.02 1.84 16 44 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 48 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 49 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 50 H 0.12 4.13 4.96 -2.91 -0.01 4.11 16 Total: -1.00 -83.56 379.70 3.46 -80.10 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.30 Total: 36.31 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 4.81 Total: -9.18 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -2.71 Total: -123.78 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.97 Total: -36.82 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.03 Total: 53.36 kcal Total: -83.56 3.46 -80.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.759 kcal (2) G-P(sol) polarization free energy of solvation -83.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds