Wall clock time and date at job start Wed Apr 1 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47263 * 240.00244 * 3 2 1 5 5 H 1.48507 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47720 * 119.99733 * 3 2 1 7 7 C 1.38812 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00081 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46922 * 185.35340 * 10 9 7 12 12 H 1.09001 * 109.58530 * 53.01676 * 11 10 9 13 13 C 1.53190 * 109.58683 * 173.44726 * 11 10 9 14 14 C 1.53042 * 109.31412 * 174.42543 * 13 11 10 15 15 C 1.53039 * 109.53499 * 298.63152 * 14 13 11 16 16 C 1.52765 * 109.38243 * 61.24163 * 15 14 13 17 17 N 1.46924 * 109.01006 * 305.58716 * 16 15 14 18 18 C 1.34774 * 120.63179 * 233.58810 * 17 16 15 19 19 O 1.21282 * 120.00163 * 174.06389 * 18 17 16 20 20 C 1.50706 * 119.99854 * 354.05631 * 18 17 16 21 21 H 1.08996 * 109.43582 * 29.84197 * 20 18 17 22 22 C 1.53073 * 109.43363 * 149.74963 * 20 18 17 23 23 C 1.53408 * 108.28967 * 168.25544 * 22 20 18 24 24 O 1.42833 * 108.37149 * 295.25099 * 23 22 20 25 25 C 1.35846 * 117.85746 * 49.15299 * 24 23 22 26 26 C 1.39142 * 118.49824 * 162.97280 * 25 24 23 27 27 C 1.37974 * 120.21818 * 179.81693 * 26 25 24 28 28 C 1.38298 * 119.95598 * 359.97438 * 27 26 25 29 29 C 1.38104 * 119.98037 * 0.08062 * 28 27 26 30 30 C 1.38370 * 121.80940 * 342.92130 * 25 24 23 31 31 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99488 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46947 * 65.35437 * 10 9 7 34 34 H 1.08996 * 109.46905 * 305.35005 * 10 9 7 35 35 H 1.09001 * 109.49803 * 294.37428 * 13 11 10 36 36 H 1.08997 * 109.49815 * 54.43507 * 13 11 10 37 37 H 1.08996 * 109.46241 * 58.64928 * 14 13 11 38 38 H 1.08993 * 109.45999 * 178.61726 * 14 13 11 39 39 H 1.08998 * 109.49957 * 181.31868 * 15 14 13 40 40 H 1.09001 * 109.50387 * 301.38550 * 15 14 13 41 41 H 1.09001 * 109.51007 * 185.70525 * 16 15 14 42 42 H 1.08998 * 109.42944 * 65.42222 * 16 15 14 43 43 H 1.08996 * 109.70280 * 287.95700 * 22 20 18 44 44 H 1.09009 * 109.69975 * 48.51913 * 22 20 18 45 45 H 1.08991 * 109.68595 * 54.97807 * 23 22 20 46 46 H 1.09002 * 109.68610 * 175.49862 * 23 22 20 47 47 H 1.08006 * 119.89481 * 359.84537 * 26 25 24 48 48 H 1.07994 * 120.02106 * 179.97438 * 27 26 25 49 49 H 1.07992 * 120.00652 * 180.02562 * 28 27 26 50 50 H 1.07998 * 119.83674 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0694 -4.8166 -0.1332 12 1 0.4314 -4.6538 -1.0018 13 6 1.8389 -6.1311 -0.2965 14 6 0.8511 -7.3000 -0.2912 15 6 0.1098 -7.3374 1.0472 16 6 -0.6752 -6.0395 1.2285 17 7 0.2409 -4.9009 1.0774 18 6 0.3241 -3.9548 2.0336 19 8 1.1590 -3.0791 1.9493 20 6 -0.6205 -3.9849 3.2075 21 1 -0.9026 -5.0161 3.4197 22 6 0.0714 -3.3837 4.4335 23 6 -0.9874 -3.1539 5.5195 24 8 -1.9095 -2.1701 5.0483 25 6 -2.4305 -2.3326 3.8043 26 6 -3.5732 -1.6154 3.4642 27 6 -4.1301 -1.7506 2.2091 28 6 -3.5512 -2.6010 1.2847 29 6 -2.4176 -3.3153 1.6193 30 6 -1.8555 -3.1852 2.8784 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6101 -3.7567 0.9362 34 1 2.7553 -3.6745 -0.8360 35 1 2.3831 -6.1191 -1.2409 36 1 2.5430 -6.2453 0.5276 37 1 0.1325 -7.1719 -1.1007 38 1 1.3937 -8.2347 -0.4319 39 1 -0.5766 -8.1840 1.0594 40 1 0.8297 -7.4411 1.8591 41 1 -1.1216 -6.0199 2.2227 42 1 -1.4585 -5.9810 0.4728 43 1 0.8315 -4.0729 4.8013 44 1 0.5352 -2.4345 4.1650 45 1 -1.5156 -4.0859 5.7203 46 1 -0.5070 -2.8004 6.4318 47 1 -4.0257 -0.9503 4.1849 48 1 -5.0173 -1.1927 1.9486 49 1 -3.9861 -2.7071 0.3020 50 1 -1.9677 -3.9790 0.8958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266880142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:51 Heat of formation + Delta-G solvation = 10.769667 kcal Electronic energy + Delta-G solvation = -32993.908755 eV Core-core repulsion = 28988.266372 eV Total energy + Delta-G solvation = -4005.642383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.92939 -39.61329 -37.16229 -36.94820 -34.91090 -33.49556 -32.44938 -31.83202 -30.31709 -29.86795 -29.74199 -26.62358 -25.61984 -24.31732 -23.53781 -22.74555 -22.29395 -21.39023 -20.58782 -19.73193 -18.46872 -17.73886 -16.93579 -16.43859 -16.29099 -15.80077 -15.52668 -14.85729 -14.65274 -14.48804 -14.41990 -14.05302 -13.75765 -13.60535 -13.39095 -13.29143 -13.06112 -12.99326 -12.77833 -12.44904 -12.21551 -12.16427 -12.01968 -11.68406 -11.54000 -11.19743 -10.97309 -10.95764 -10.76569 -10.70223 -10.64307 -10.59481 -10.44100 -10.28852 -10.22019 -9.83417 -9.44621 -8.69333 -8.56580 -8.16445 -8.01607 -7.74663 -6.41936 -5.47807 -2.67651 1.66743 1.83226 3.36212 3.41233 3.55077 3.59399 3.62537 3.63619 4.12473 4.70259 4.73973 4.78816 4.84766 4.86599 4.97078 4.98448 5.08763 5.19354 5.23730 5.36009 5.39794 5.41799 5.46474 5.54335 5.62277 5.67002 5.74064 5.80484 5.82400 5.85111 5.85981 5.89050 5.98433 6.03154 6.08486 6.12370 6.18158 6.34758 6.37377 6.43679 6.58392 6.62501 6.70565 6.79315 6.92102 6.97922 7.12779 7.30683 7.73584 7.92292 8.00487 8.68812 9.02226 9.80489 10.40009 10.74438 11.74825 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.006666 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.814984 B = 4199.478352 C = 6456.347941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.017 4.017 3 Si 0.898 3.102 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.062 0.938 9 N -0.691 5.691 10 C 0.161 3.839 11 C 0.142 3.858 12 H 0.066 0.934 13 C -0.127 4.127 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.107 3.893 17 N -0.617 5.617 18 C 0.479 3.521 19 O -0.429 6.429 20 C -0.060 4.060 21 H 0.090 0.910 22 C -0.147 4.147 23 C 0.066 3.934 24 O -0.318 6.318 25 C 0.138 3.862 26 C -0.152 4.152 27 C -0.085 4.085 28 C -0.142 4.142 29 C -0.069 4.069 30 C -0.139 4.139 31 H 0.249 0.751 32 H 0.380 0.620 33 H 0.037 0.963 34 H 0.014 0.986 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.106 0.894 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -16.945 6.611 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.212 4.212 3 Si 0.730 3.270 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.080 0.920 9 N -0.335 5.335 10 C 0.034 3.966 11 C 0.039 3.961 12 H 0.084 0.916 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.172 4.172 16 C -0.017 4.017 17 N -0.356 5.356 18 C 0.263 3.737 19 O -0.295 6.295 20 C -0.081 4.081 21 H 0.108 0.892 22 C -0.185 4.185 23 C -0.009 4.009 24 O -0.232 6.232 25 C 0.093 3.907 26 C -0.171 4.171 27 C -0.103 4.103 28 C -0.161 4.161 29 C -0.087 4.087 30 C -0.140 4.140 31 H 0.059 0.941 32 H 0.214 0.786 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.138 0.862 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.923 -16.117 6.718 18.438 hybrid contribution 0.244 0.770 -0.140 0.820 sum -5.679 -15.347 6.578 17.637 Atomic orbital electron populations 1.69643 1.04739 1.24856 1.58685 1.24586 0.95394 0.96989 1.04222 0.86391 0.78495 0.84559 0.77514 1.21772 1.22016 1.21762 1.19049 0.90568 0.84327 1.40569 0.91979 1.42257 1.05358 0.99571 1.86288 1.20863 0.92884 0.85002 0.97864 1.21471 0.92556 0.95456 0.86596 0.91555 1.21901 0.98034 0.94278 1.02353 1.21485 0.98461 0.98260 0.97238 1.21844 0.99730 0.97253 0.98380 1.21611 0.92229 0.85806 1.02029 1.47869 1.42769 1.24438 1.20512 1.20003 0.87214 0.82242 0.84271 1.91153 1.33483 1.32840 1.72031 1.20205 0.93184 0.99206 0.95516 0.89187 1.22154 0.97968 1.04331 0.94003 1.22912 0.89592 0.91371 0.97021 1.85961 1.58930 1.48911 1.29382 1.18573 0.92500 0.95516 0.84075 1.20453 0.95512 1.02994 0.98144 1.20829 0.99431 0.97447 0.92566 1.20908 0.97305 0.98502 0.99336 1.20961 0.94689 0.98515 0.94545 1.19292 0.97120 1.02314 0.95318 0.94088 0.78567 0.94557 0.96858 0.91032 0.91623 0.91903 0.92114 0.91253 0.91699 0.90050 0.91977 0.90102 0.88321 0.92280 0.87641 0.85759 0.85891 0.86237 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.59 13.06 55.49 0.72 -28.87 16 2 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 3 Si 0.90 24.16 29.55 -169.99 -5.02 19.14 16 4 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 7 C -0.21 -6.38 9.67 -15.06 -0.15 -6.53 16 8 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.69 -18.50 3.16 -59.91 -0.19 -18.69 16 10 C 0.16 3.49 4.87 -4.04 -0.02 3.47 16 11 C 0.14 2.37 2.95 -67.60 -0.20 2.17 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.13 -1.61 5.37 -26.61 -0.14 -1.75 16 14 C -0.12 -1.16 5.89 -26.69 -0.16 -1.32 16 15 C -0.13 -1.25 6.06 -26.83 -0.16 -1.41 16 16 C 0.11 1.21 4.99 -3.93 -0.02 1.19 16 17 N -0.62 -9.59 2.38 -165.48 -0.39 -9.98 16 18 C 0.48 8.91 5.17 -10.98 -0.06 8.86 16 19 O -0.43 -10.24 9.60 5.56 0.05 -10.19 16 20 C -0.06 -0.94 2.17 -92.85 -0.20 -1.14 16 21 H 0.09 1.13 5.73 -51.93 -0.30 0.83 16 22 C -0.15 -2.22 5.30 -26.48 -0.14 -2.36 16 23 C 0.07 0.85 7.03 37.37 0.26 1.11 16 24 O -0.32 -5.29 10.27 -19.26 -0.20 -5.49 16 25 C 0.14 2.45 6.47 -39.20 -0.25 2.20 16 26 C -0.15 -2.52 9.94 -39.34 -0.39 -2.91 16 27 C -0.08 -1.32 10.04 -39.66 -0.40 -1.72 16 28 C -0.14 -2.33 10.05 -39.61 -0.40 -2.73 16 29 C -0.07 -1.20 8.97 -39.53 -0.35 -1.55 16 30 C -0.14 -2.44 5.43 -104.44 -0.57 -3.00 16 31 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 32 H 0.38 10.80 6.85 -40.82 -0.28 10.52 16 33 H 0.04 0.85 6.48 -51.93 -0.34 0.52 16 34 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.84 5.28 -51.93 -0.27 0.56 16 42 H 0.06 0.67 7.62 -51.93 -0.40 0.28 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.10 1.92 7.44 -51.92 -0.39 1.54 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 49 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 50 H 0.12 2.06 5.00 -52.49 -0.26 1.80 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -35.82 379.48 -10.45 -46.27 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.70 Total: 10.14 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.44 Total: -8.04 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.14 Total: -57.54 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.14 Total: -15.68 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.02 Total: 19.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.82 -10.45 -46.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds