Wall clock time and date at job start Wed Apr 1 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47263 * 240.00244 * 3 2 1 5 5 H 1.48507 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47720 * 119.99733 * 3 2 1 7 7 C 1.38812 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99906 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00081 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46922 * 185.35340 * 10 9 7 12 12 H 1.09001 * 109.58530 * 53.01676 * 11 10 9 13 13 C 1.53190 * 109.58683 * 173.44726 * 11 10 9 14 14 C 1.53042 * 109.31412 * 174.42543 * 13 11 10 15 15 C 1.53039 * 109.53499 * 298.63152 * 14 13 11 16 16 C 1.52765 * 109.38243 * 61.24163 * 15 14 13 17 17 N 1.46924 * 109.01006 * 305.58716 * 16 15 14 18 18 C 1.34774 * 120.63179 * 233.58810 * 17 16 15 19 19 O 1.21282 * 120.00163 * 174.06389 * 18 17 16 20 20 C 1.50706 * 119.99854 * 354.05631 * 18 17 16 21 21 H 1.08996 * 109.43582 * 29.84197 * 20 18 17 22 22 C 1.53073 * 109.43363 * 149.74963 * 20 18 17 23 23 C 1.53408 * 108.28967 * 168.25544 * 22 20 18 24 24 O 1.42833 * 108.37149 * 295.25099 * 23 22 20 25 25 C 1.35846 * 117.85746 * 49.15299 * 24 23 22 26 26 C 1.39142 * 118.49824 * 162.97280 * 25 24 23 27 27 C 1.37974 * 120.21818 * 179.81693 * 26 25 24 28 28 C 1.38298 * 119.95598 * 359.97438 * 27 26 25 29 29 C 1.38104 * 119.98037 * 0.08062 * 28 27 26 30 30 C 1.38370 * 121.80940 * 342.92130 * 25 24 23 31 31 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 32 32 H 0.97003 * 119.99488 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46947 * 65.35437 * 10 9 7 34 34 H 1.08996 * 109.46905 * 305.35005 * 10 9 7 35 35 H 1.09001 * 109.49803 * 294.37428 * 13 11 10 36 36 H 1.08997 * 109.49815 * 54.43507 * 13 11 10 37 37 H 1.08996 * 109.46241 * 58.64928 * 14 13 11 38 38 H 1.08993 * 109.45999 * 178.61726 * 14 13 11 39 39 H 1.08998 * 109.49957 * 181.31868 * 15 14 13 40 40 H 1.09001 * 109.50387 * 301.38550 * 15 14 13 41 41 H 1.09001 * 109.51007 * 185.70525 * 16 15 14 42 42 H 1.08998 * 109.42944 * 65.42222 * 16 15 14 43 43 H 1.08996 * 109.70280 * 287.95700 * 22 20 18 44 44 H 1.09009 * 109.69975 * 48.51913 * 22 20 18 45 45 H 1.08991 * 109.68595 * 54.97807 * 23 22 20 46 46 H 1.09002 * 109.68610 * 175.49862 * 23 22 20 47 47 H 1.08006 * 119.89481 * 359.84537 * 26 25 24 48 48 H 1.07994 * 120.02106 * 179.97438 * 27 26 25 49 49 H 1.07992 * 120.00652 * 180.02562 * 28 27 26 50 50 H 1.07998 * 119.83674 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0694 -4.8166 -0.1332 12 1 0.4314 -4.6538 -1.0018 13 6 1.8389 -6.1311 -0.2965 14 6 0.8511 -7.3000 -0.2912 15 6 0.1098 -7.3374 1.0472 16 6 -0.6752 -6.0395 1.2285 17 7 0.2409 -4.9009 1.0774 18 6 0.3241 -3.9548 2.0336 19 8 1.1590 -3.0791 1.9493 20 6 -0.6205 -3.9849 3.2075 21 1 -0.9026 -5.0161 3.4197 22 6 0.0714 -3.3837 4.4335 23 6 -0.9874 -3.1539 5.5195 24 8 -1.9095 -2.1701 5.0483 25 6 -2.4305 -2.3326 3.8043 26 6 -3.5732 -1.6154 3.4642 27 6 -4.1301 -1.7506 2.2091 28 6 -3.5512 -2.6010 1.2847 29 6 -2.4176 -3.3153 1.6193 30 6 -1.8555 -3.1852 2.8784 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6101 -3.7567 0.9362 34 1 2.7553 -3.6745 -0.8360 35 1 2.3831 -6.1191 -1.2409 36 1 2.5430 -6.2453 0.5276 37 1 0.1325 -7.1719 -1.1007 38 1 1.3937 -8.2347 -0.4319 39 1 -0.5766 -8.1840 1.0594 40 1 0.8297 -7.4411 1.8591 41 1 -1.1216 -6.0199 2.2227 42 1 -1.4585 -5.9810 0.4728 43 1 0.8315 -4.0729 4.8013 44 1 0.5352 -2.4345 4.1650 45 1 -1.5156 -4.0859 5.7203 46 1 -0.5070 -2.8004 6.4318 47 1 -4.0257 -0.9503 4.1849 48 1 -5.0173 -1.1927 1.9486 49 1 -3.9861 -2.7071 0.3020 50 1 -1.9677 -3.9790 0.8958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266880142.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:50 Heat of formation + Delta-G solvation = -11.327318 kcal Electronic energy + Delta-G solvation = -32994.866952 eV Core-core repulsion = 28988.266372 eV Total energy + Delta-G solvation = -4006.600580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.21840 -40.89775 -38.39361 -38.18794 -36.59769 -35.11054 -33.61314 -33.48722 -31.56318 -31.45408 -31.10551 -27.98460 -27.10496 -25.73142 -24.72815 -24.30874 -23.70905 -22.79345 -21.72912 -20.91302 -19.80727 -19.23310 -18.71162 -17.69668 -17.62089 -17.05335 -16.81648 -16.64516 -15.99004 -15.81410 -15.47865 -15.42626 -15.20772 -15.03493 -14.84005 -14.65361 -14.47902 -14.22795 -14.12888 -13.81748 -13.62878 -13.54366 -13.30404 -13.10150 -12.82209 -12.77095 -12.69420 -12.43155 -12.20117 -12.01836 -11.98950 -11.86321 -11.73938 -11.68129 -11.50716 -11.34944 -11.29762 -10.84360 -10.02102 -9.56104 -9.42564 -9.03047 -8.55185 -7.80954 -4.98812 0.39553 0.54014 1.39486 1.43781 1.48956 1.97394 2.14208 2.40686 2.60512 2.85283 3.49943 3.51399 3.66000 3.72738 3.77018 3.85478 3.93154 4.00612 4.13707 4.16185 4.22772 4.24788 4.35563 4.39765 4.42265 4.50181 4.54711 4.57519 4.60531 4.64162 4.70056 4.82515 4.89287 4.93727 5.01268 5.06686 5.09111 5.13974 5.16961 5.18739 5.26959 5.34658 5.36903 5.51127 5.51593 5.55256 5.64623 5.87206 5.91390 6.37702 6.51392 6.68792 7.44991 7.62157 8.25985 8.48948 9.41511 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.006666 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.814984 B = 4199.478352 C = 6456.347941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.078 4.078 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.215 4.215 8 H 0.057 0.943 9 N -0.698 5.698 10 C 0.164 3.836 11 C 0.147 3.853 12 H 0.059 0.941 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.099 3.901 17 N -0.611 5.611 18 C 0.482 3.518 19 O -0.496 6.496 20 C -0.056 4.056 21 H 0.129 0.871 22 C -0.143 4.143 23 C 0.065 3.935 24 O -0.334 6.334 25 C 0.119 3.881 26 C -0.167 4.167 27 C -0.086 4.086 28 C -0.157 4.157 29 C -0.085 4.085 30 C -0.155 4.155 31 H 0.242 0.758 32 H 0.369 0.631 33 H 0.018 0.982 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.140 0.860 48 H 0.152 0.848 49 H 0.135 0.865 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.358 -19.648 7.152 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.270 4.270 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.348 4.348 8 H 0.075 0.925 9 N -0.339 5.339 10 C 0.037 3.963 11 C 0.044 3.956 12 H 0.077 0.923 13 C -0.157 4.157 14 C -0.150 4.150 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.348 5.348 18 C 0.267 3.733 19 O -0.367 6.367 20 C -0.077 4.077 21 H 0.147 0.853 22 C -0.181 4.181 23 C -0.009 4.009 24 O -0.249 6.249 25 C 0.074 3.926 26 C -0.185 4.185 27 C -0.104 4.104 28 C -0.175 4.175 29 C -0.103 4.103 30 C -0.157 4.157 31 H 0.050 0.950 32 H 0.201 0.799 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.148 0.852 47 H 0.158 0.842 48 H 0.170 0.830 49 H 0.153 0.847 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.746 -18.905 7.246 21.341 hybrid contribution 0.526 1.510 -0.274 1.622 sum -6.220 -17.396 6.972 19.746 Atomic orbital electron populations 1.69811 1.05924 1.24776 1.60614 1.25281 0.96319 0.99990 1.05374 0.85414 0.77283 0.80690 0.77647 1.20426 1.22209 1.21888 1.19359 0.90568 0.85959 1.38950 0.92493 1.42289 1.04771 1.00388 1.86443 1.20892 0.93839 0.85133 0.96416 1.21333 0.91918 0.95573 0.86795 0.92315 1.21844 0.98277 0.93052 1.02535 1.21487 0.98007 0.97608 0.97869 1.21832 0.99983 0.96757 0.97901 1.21961 0.91977 0.85115 1.03235 1.47982 1.42678 1.24963 1.19204 1.20604 0.86280 0.81525 0.84848 1.91130 1.36211 1.35283 1.74117 1.20257 0.91906 1.01179 0.94325 0.85340 1.22095 0.99113 1.02142 0.94796 1.23223 0.88678 0.92382 0.96651 1.85927 1.59557 1.50456 1.28955 1.18864 0.93158 0.95849 0.84717 1.20811 0.95580 1.03144 0.98986 1.21199 1.00146 0.97050 0.92010 1.21235 0.97338 0.98586 1.00337 1.21117 0.95293 0.99210 0.94669 1.19493 0.97676 1.02921 0.95572 0.94969 0.79882 0.96406 0.97178 0.90340 0.92105 0.91396 0.89767 0.88024 0.91723 0.88642 0.91049 0.87684 0.93676 0.88960 0.85201 0.84241 0.83027 0.84684 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.27 13.06 21.65 0.28 -62.99 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 3 Si 0.96 51.27 29.55 68.60 2.03 53.29 16 4 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 6 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 7 C -0.22 -13.41 9.67 84.03 0.81 -12.59 16 8 H 0.06 3.51 7.83 -2.91 -0.02 3.48 16 9 N -0.70 -38.99 3.16 -343.46 -1.08 -40.07 16 10 C 0.16 7.36 4.87 86.38 0.42 7.78 16 11 C 0.15 4.88 2.95 44.97 0.13 5.02 16 12 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.12 -2.79 5.37 30.67 0.16 -2.63 16 14 C -0.11 -1.82 5.89 30.62 0.18 -1.64 16 15 C -0.13 -1.85 6.06 30.53 0.19 -1.66 16 16 C 0.10 1.96 4.99 86.22 0.43 2.39 16 17 N -0.61 -18.59 2.38 -795.84 -1.89 -20.48 16 18 C 0.48 18.21 5.17 87.66 0.45 18.66 16 19 O -0.50 -24.89 9.60 -3.04 -0.03 -24.92 16 20 C -0.06 -1.73 2.17 -12.24 -0.03 -1.75 16 21 H 0.13 2.87 5.73 -2.39 -0.01 2.86 16 22 C -0.14 -4.33 5.30 30.76 0.16 -4.17 16 23 C 0.06 1.57 7.03 72.12 0.51 2.07 16 24 O -0.33 -11.03 10.27 -91.82 -0.94 -11.97 16 25 C 0.12 4.22 6.47 22.52 0.15 4.37 16 26 C -0.17 -5.46 9.94 22.42 0.22 -5.24 16 27 C -0.09 -2.63 10.04 22.22 0.22 -2.41 16 28 C -0.16 -5.11 10.05 22.25 0.22 -4.88 16 29 C -0.08 -2.94 8.97 22.30 0.20 -2.74 16 30 C -0.16 -5.44 5.43 -19.75 -0.11 -5.55 16 31 H 0.24 15.67 8.31 -92.70 -0.77 14.90 16 32 H 0.37 21.93 6.85 -92.71 -0.64 21.30 16 33 H 0.02 0.89 6.48 -2.39 -0.02 0.87 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.63 5.28 -2.39 -0.01 1.62 16 42 H 0.07 1.34 7.62 -2.39 -0.02 1.33 16 43 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.04 1.86 7.44 -2.38 -0.02 1.84 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 48 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 49 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 50 H 0.12 4.14 5.00 -2.91 -0.01 4.13 16 Total: -1.00 -83.35 379.48 3.47 -79.88 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.32 Total: 36.70 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.80 Total: -9.43 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -2.70 Total: -123.55 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.97 Total: -36.89 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.03 Total: 53.29 kcal Total: -83.35 3.47 -79.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266880142.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.549 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds