Wall clock time and date at job start Wed Apr 1 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48502 * 109.46972 * 269.99661 * 3 2 1 5 5 H 1.48491 * 109.47258 * 30.00374 * 3 2 1 6 6 H 1.48509 * 109.46923 * 150.00478 * 3 2 1 7 7 C 1.38814 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 166.14906 * 7 2 1 9 9 N 1.36933 * 120.00019 * 345.87589 * 7 2 1 10 10 C 1.47148 * 120.98130 * 332.20058 * 9 7 2 11 11 C 1.53299 * 108.38364 * 230.51285 * 10 9 7 12 12 O 1.42958 * 109.22260 * 307.70083 * 11 10 9 13 13 C 1.42953 * 114.16872 * 62.58072 * 12 11 10 14 14 H 1.09003 * 109.51677 * 57.39534 * 13 12 11 15 15 C 1.53005 * 109.51551 * 177.49472 * 13 12 11 16 16 N 1.46504 * 109.47019 * 300.00092 * 15 13 12 17 17 C 1.34767 * 119.99844 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00731 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00112 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47318 * 185.08597 * 19 17 16 21 21 C 1.50694 * 115.54743 * 279.32965 * 20 19 17 22 22 C 1.38239 * 119.99925 * 114.02448 * 21 20 19 23 23 C 1.38239 * 120.00009 * 179.74359 * 22 21 20 24 24 C 1.38236 * 119.99686 * 0.53570 * 23 22 21 25 25 C 1.38234 * 120.00115 * 359.73909 * 24 23 22 26 26 C 1.38227 * 120.00301 * 359.97438 * 25 24 23 27 27 C 1.52997 * 117.49825 * 133.62902 * 20 19 17 28 28 C 1.52991 * 117.50041 * 65.00303 * 20 19 17 29 29 C 1.47152 * 120.98251 * 151.91841 * 9 7 2 30 30 H 0.97003 * 119.99653 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.68552 * 350.23429 * 10 9 7 32 32 H 1.09000 * 109.68691 * 110.75475 * 10 9 7 33 33 H 1.09001 * 109.51338 * 67.62437 * 11 10 9 34 34 H 1.09007 * 109.51250 * 187.77004 * 11 10 9 35 35 H 1.08999 * 109.46709 * 59.99724 * 15 13 12 36 36 H 1.08991 * 109.47222 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99779 * 359.97438 * 16 15 13 38 38 H 1.09012 * 109.46702 * 305.08329 * 19 17 16 39 39 H 1.08995 * 109.47204 * 65.07923 * 19 17 16 40 40 H 1.07999 * 119.99993 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.99844 * 180.29835 * 23 22 21 42 42 H 1.08000 * 119.99660 * 179.76647 * 24 23 22 43 43 H 1.08000 * 119.99655 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.00453 * 179.97438 * 26 25 24 45 45 H 1.08996 * 117.50002 * 359.97438 * 27 20 19 46 46 H 1.08997 * 117.49933 * 145.02076 * 27 20 19 47 47 H 1.09002 * 117.49645 * 214.97941 * 28 20 19 48 48 H 1.09002 * 117.50249 * 359.97438 * 28 20 19 49 49 H 1.08993 * 109.68187 * 249.20759 * 29 9 7 50 50 H 1.09000 * 109.68052 * 9.76749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0666 -1.2158 -0.2245 9 7 1.3565 -2.3702 0.2883 10 6 0.1674 -2.3784 1.1551 11 6 0.3670 -3.4435 2.2395 12 8 0.7107 -4.6859 1.6214 13 6 1.9410 -4.6571 0.8940 14 1 2.7501 -4.3543 1.5588 15 6 2.2352 -6.0495 0.3322 16 7 2.3427 -7.0082 1.4347 17 6 2.5994 -8.3058 1.1767 18 8 2.7420 -8.6799 0.0318 19 6 2.7094 -9.2922 2.3107 20 6 3.1276 -10.6573 1.7607 21 6 2.0193 -11.4837 1.1611 22 6 2.0212 -11.7646 -0.1925 23 6 1.0073 -12.5272 -0.7416 24 6 -0.0144 -12.9994 0.0609 25 6 -0.0194 -12.7137 1.4134 26 6 0.9976 -11.9562 1.9636 27 6 4.2474 -11.4006 2.4917 28 6 4.5146 -10.7678 1.1246 29 6 1.8187 -3.6535 -0.2639 30 1 -0.4850 0.8401 -0.0004 31 1 0.0450 -1.4000 1.6197 32 1 -0.7165 -2.6171 0.5637 33 1 1.1701 -3.1354 2.9090 34 1 -0.5559 -3.5622 2.8074 35 1 1.4267 -6.3508 -0.3338 36 1 3.1731 -6.0266 -0.2226 37 1 2.2290 -6.7090 2.3505 38 1 3.4562 -8.9437 3.0243 39 1 1.7443 -9.3816 2.8094 40 1 2.8173 -11.3922 -0.8201 41 1 1.0114 -12.7507 -1.7982 42 1 -0.8086 -13.5920 -0.3688 43 1 -0.8174 -13.0830 2.0404 44 1 0.9935 -11.7326 3.0201 45 1 4.6864 -10.9169 3.3643 46 1 4.1826 -12.4876 2.5391 47 1 4.6256 -11.4386 0.2725 48 1 5.1291 -9.8679 1.0975 49 1 1.0983 -4.0190 -0.9956 50 1 2.7903 -3.5199 -0.7394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270657529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:08 Heat of formation + Delta-G solvation = -8.375624 kcal Electronic energy + Delta-G solvation = -29742.880373 eV Core-core repulsion = 25736.407788 eV Total energy + Delta-G solvation = -4006.472585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.38742 -39.19902 -38.39253 -37.05508 -34.81723 -34.23956 -31.67458 -31.11050 -30.82901 -30.70075 -29.44950 -27.37966 -25.33360 -23.44627 -23.20988 -23.15774 -21.92699 -21.84487 -20.73100 -19.77364 -19.29067 -17.30506 -17.02365 -16.74456 -16.14086 -15.97363 -15.51052 -15.09806 -14.94640 -14.92136 -14.74368 -14.37799 -14.12275 -13.94307 -13.64396 -13.51036 -13.22226 -13.05776 -12.89320 -12.72920 -12.61588 -12.37448 -11.92375 -11.66348 -11.55748 -11.28544 -11.18072 -11.12188 -10.88247 -10.72235 -10.64447 -10.42397 -10.30383 -10.20335 -10.03293 -9.77836 -9.59743 -9.07981 -9.00514 -8.89695 -8.76268 -8.57837 -6.75612 -5.86833 -3.33253 1.23024 1.32261 2.76683 3.13700 3.31858 3.38685 3.40355 3.58616 3.78774 4.23174 4.32857 4.40399 4.49367 4.65899 4.70777 4.88491 4.90104 5.03081 5.07620 5.16012 5.29551 5.31376 5.31810 5.41169 5.47985 5.48508 5.52359 5.56612 5.64181 5.75510 5.78960 5.86723 5.90608 5.93577 5.98430 6.03677 6.14914 6.28854 6.35154 6.36758 6.42192 6.47335 6.55432 6.58330 6.74056 6.90215 7.08681 7.50419 7.63825 7.67849 7.83651 8.31844 8.35791 9.08973 9.70848 10.28575 11.21022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.002017 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.213158 B =13875.853379 C =14267.677754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.140 3.860 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.132 3.868 16 N -0.723 5.723 17 C 0.510 3.490 18 O -0.533 6.533 19 C -0.102 4.102 20 C -0.072 4.072 21 C -0.041 4.041 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.168 4.168 28 C -0.151 4.151 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.402 0.598 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.030 0.970 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -24.336 7.174 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.008 3.992 16 N -0.375 5.375 17 C 0.296 3.704 18 O -0.409 6.409 19 C -0.142 4.142 20 C -0.072 4.072 21 C -0.041 4.041 22 C -0.110 4.110 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.205 4.205 28 C -0.188 4.188 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.236 0.764 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.048 0.952 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.405 -24.580 6.335 25.763 hybrid contribution 0.269 1.475 0.374 1.545 sum 4.674 -23.105 6.709 24.510 Atomic orbital electron populations 1.70007 1.05283 1.25675 1.53836 1.25114 0.95416 0.98508 1.00563 0.86237 0.79029 0.83312 0.77827 1.21241 1.21471 1.20433 1.19177 0.91692 0.84045 1.43579 0.91449 1.44062 1.32096 1.01829 1.53813 1.21443 0.88924 0.97766 0.90451 1.23329 0.98942 0.85458 0.96086 1.87776 1.39978 1.33942 1.69222 1.22891 0.87145 0.94044 0.95399 0.92430 1.21383 1.01898 0.86626 0.89277 1.45959 1.72660 1.07995 1.10863 1.20500 0.76624 0.82631 0.90689 1.90686 1.49430 1.78465 1.22364 1.21218 1.04046 0.91970 0.96953 1.19641 0.88999 0.94446 1.04117 1.18932 0.94796 0.96948 0.93410 1.21088 0.98778 0.96594 0.94516 1.21165 0.94825 0.98409 0.99770 1.21133 0.98581 1.00475 0.94069 1.21074 0.98575 0.99285 0.95326 1.20945 0.94306 0.98362 0.99637 1.23187 1.01047 0.99906 0.96345 1.22917 0.97133 1.02724 0.95977 1.21534 0.98925 0.87218 0.92882 0.93460 0.88753 0.95393 0.94146 0.90082 0.90933 0.90379 0.76405 0.88738 0.88361 0.85693 0.86237 0.86389 0.86266 0.86264 0.88462 0.88623 0.88564 0.88636 0.95236 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.08 55.49 0.61 -25.26 16 2 C 0.00 0.07 5.00 -17.43 -0.09 -0.01 16 3 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.90 9.65 -15.06 -0.15 -7.05 16 8 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 9 N -0.59 -14.79 3.04 -171.57 -0.52 -15.31 16 10 C 0.14 3.31 5.41 -3.53 -0.02 3.29 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -7.20 10.13 -35.23 -0.36 -7.56 16 13 C 0.07 1.12 2.88 -26.36 -0.08 1.05 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.99 5.37 -4.04 -0.02 1.97 16 16 N -0.72 -9.28 5.45 -60.29 -0.33 -9.61 16 17 C 0.51 6.60 7.68 -10.99 -0.08 6.51 16 18 O -0.53 -8.58 15.15 5.56 0.08 -8.50 16 19 C -0.10 -0.95 5.62 -27.88 -0.16 -1.11 16 20 C -0.07 -0.69 1.18 -155.67 -0.18 -0.88 16 21 C -0.04 -0.44 4.95 -104.62 -0.52 -0.96 16 22 C -0.09 -1.06 9.00 -39.58 -0.36 -1.41 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 26 C -0.11 -1.12 9.47 -39.58 -0.37 -1.50 16 27 C -0.17 -1.29 9.88 -26.73 -0.26 -1.55 16 28 C -0.15 -1.42 8.63 -26.74 -0.23 -1.65 16 29 C 0.12 2.53 6.05 -3.31 -0.02 2.51 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 4.48 8.35 -40.82 -0.34 4.14 16 38 H 0.09 0.67 7.94 -51.92 -0.41 0.26 16 39 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 40 H 0.13 1.47 7.05 -52.49 -0.37 1.11 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.90 7.16 -51.93 -0.37 0.53 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 LS Contribution 405.93 15.07 6.12 6.12 Total: -1.00 -31.91 405.93 -10.99 -42.90 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.10 Total: 5.57 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.47 Total: -4.62 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.24 Total: -50.18 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.27 Total: -16.05 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.91 -10.99 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270657529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.529 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds