Wall clock time and date at job start Wed Apr 1 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48502 * 109.46972 * 269.99661 * 3 2 1 5 5 H 1.48491 * 109.47258 * 30.00374 * 3 2 1 6 6 H 1.48509 * 109.46923 * 150.00478 * 3 2 1 7 7 C 1.38814 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 166.14906 * 7 2 1 9 9 N 1.36933 * 120.00019 * 345.87589 * 7 2 1 10 10 C 1.47148 * 120.98130 * 332.20058 * 9 7 2 11 11 C 1.53299 * 108.38364 * 230.51285 * 10 9 7 12 12 O 1.42958 * 109.22260 * 307.70083 * 11 10 9 13 13 C 1.42953 * 114.16872 * 62.58072 * 12 11 10 14 14 H 1.09003 * 109.51677 * 57.39534 * 13 12 11 15 15 C 1.53005 * 109.51551 * 177.49472 * 13 12 11 16 16 N 1.46504 * 109.47019 * 300.00092 * 15 13 12 17 17 C 1.34767 * 119.99844 * 179.97438 * 16 15 13 18 18 O 1.21283 * 120.00731 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00112 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47318 * 185.08597 * 19 17 16 21 21 C 1.50694 * 115.54743 * 279.32965 * 20 19 17 22 22 C 1.38239 * 119.99925 * 114.02448 * 21 20 19 23 23 C 1.38239 * 120.00009 * 179.74359 * 22 21 20 24 24 C 1.38236 * 119.99686 * 0.53570 * 23 22 21 25 25 C 1.38234 * 120.00115 * 359.73909 * 24 23 22 26 26 C 1.38227 * 120.00301 * 359.97438 * 25 24 23 27 27 C 1.52997 * 117.49825 * 133.62902 * 20 19 17 28 28 C 1.52991 * 117.50041 * 65.00303 * 20 19 17 29 29 C 1.47152 * 120.98251 * 151.91841 * 9 7 2 30 30 H 0.97003 * 119.99653 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.68552 * 350.23429 * 10 9 7 32 32 H 1.09000 * 109.68691 * 110.75475 * 10 9 7 33 33 H 1.09001 * 109.51338 * 67.62437 * 11 10 9 34 34 H 1.09007 * 109.51250 * 187.77004 * 11 10 9 35 35 H 1.08999 * 109.46709 * 59.99724 * 15 13 12 36 36 H 1.08991 * 109.47222 * 179.97438 * 15 13 12 37 37 H 0.97006 * 119.99779 * 359.97438 * 16 15 13 38 38 H 1.09012 * 109.46702 * 305.08329 * 19 17 16 39 39 H 1.08995 * 109.47204 * 65.07923 * 19 17 16 40 40 H 1.07999 * 119.99993 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.99844 * 180.29835 * 23 22 21 42 42 H 1.08000 * 119.99660 * 179.76647 * 24 23 22 43 43 H 1.08000 * 119.99655 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.00453 * 179.97438 * 26 25 24 45 45 H 1.08996 * 117.50002 * 359.97438 * 27 20 19 46 46 H 1.08997 * 117.49933 * 145.02076 * 27 20 19 47 47 H 1.09002 * 117.49645 * 214.97941 * 28 20 19 48 48 H 1.09002 * 117.50249 * 359.97438 * 28 20 19 49 49 H 1.08993 * 109.68187 * 249.20759 * 29 9 7 50 50 H 1.09000 * 109.68052 * 9.76749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0666 -1.2158 -0.2245 9 7 1.3565 -2.3702 0.2883 10 6 0.1674 -2.3784 1.1551 11 6 0.3670 -3.4435 2.2395 12 8 0.7107 -4.6859 1.6214 13 6 1.9410 -4.6571 0.8940 14 1 2.7501 -4.3543 1.5588 15 6 2.2352 -6.0495 0.3322 16 7 2.3427 -7.0082 1.4347 17 6 2.5994 -8.3058 1.1767 18 8 2.7420 -8.6799 0.0318 19 6 2.7094 -9.2922 2.3107 20 6 3.1276 -10.6573 1.7607 21 6 2.0193 -11.4837 1.1611 22 6 2.0212 -11.7646 -0.1925 23 6 1.0073 -12.5272 -0.7416 24 6 -0.0144 -12.9994 0.0609 25 6 -0.0194 -12.7137 1.4134 26 6 0.9976 -11.9562 1.9636 27 6 4.2474 -11.4006 2.4917 28 6 4.5146 -10.7678 1.1246 29 6 1.8187 -3.6535 -0.2639 30 1 -0.4850 0.8401 -0.0004 31 1 0.0450 -1.4000 1.6197 32 1 -0.7165 -2.6171 0.5637 33 1 1.1701 -3.1354 2.9090 34 1 -0.5559 -3.5622 2.8074 35 1 1.4267 -6.3508 -0.3338 36 1 3.1731 -6.0266 -0.2226 37 1 2.2290 -6.7090 2.3505 38 1 3.4562 -8.9437 3.0243 39 1 1.7443 -9.3816 2.8094 40 1 2.8173 -11.3922 -0.8201 41 1 1.0114 -12.7507 -1.7982 42 1 -0.8086 -13.5920 -0.3688 43 1 -0.8174 -13.0830 2.0404 44 1 0.9935 -11.7326 3.0201 45 1 4.6864 -10.9169 3.3643 46 1 4.1826 -12.4876 2.5391 47 1 4.6256 -11.4386 0.2725 48 1 5.1291 -9.8679 1.0975 49 1 1.0983 -4.0190 -0.9956 50 1 2.7903 -3.5199 -0.7394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270657529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:07 Heat of formation + Delta-G solvation = -26.823140 kcal Electronic energy + Delta-G solvation = -29743.680317 eV Core-core repulsion = 25736.407788 eV Total energy + Delta-G solvation = -4007.272529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.25033 -40.34268 -39.69619 -37.81504 -36.46952 -35.63872 -33.38790 -32.49519 -31.79513 -31.41945 -30.47036 -29.04059 -26.91870 -24.98671 -24.22639 -23.88506 -23.32652 -22.61153 -21.84870 -21.28509 -20.15416 -18.90480 -18.05907 -17.82329 -17.52567 -17.07761 -16.80520 -16.42528 -16.20386 -15.90288 -15.74346 -15.52562 -15.44615 -15.09604 -14.99668 -14.83811 -14.59556 -14.28309 -14.17540 -13.86511 -13.53147 -13.23606 -13.07450 -12.99166 -12.82454 -12.70690 -12.50350 -12.32643 -12.19803 -12.08328 -12.00660 -11.91246 -11.85969 -11.37979 -11.32669 -10.95124 -10.80160 -10.65698 -10.53846 -10.01314 -9.75803 -9.50493 -8.74640 -7.92339 -5.42819 0.49412 0.56454 1.46042 1.46656 1.56726 1.77925 2.16684 2.47061 2.77146 2.85139 3.04343 3.23356 3.49151 3.64783 3.79264 3.90828 3.96362 4.00262 4.06495 4.18916 4.22506 4.23447 4.33781 4.36452 4.48603 4.51662 4.61602 4.63952 4.64671 4.70936 4.75285 4.80391 4.82892 4.88494 4.89636 4.96152 5.05744 5.09117 5.21235 5.23372 5.24809 5.29604 5.47898 5.54816 5.59859 5.64304 5.67496 5.80236 6.18033 6.25149 6.32860 6.66272 7.05042 7.37124 7.72197 8.26638 9.13335 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.002017 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.213158 B =13875.853379 C =14267.677754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.267 4.267 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.055 3.945 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.070 0.930 15 C 0.144 3.856 16 N -0.717 5.717 17 C 0.506 3.494 18 O -0.570 6.570 19 C -0.094 4.094 20 C -0.084 4.084 21 C -0.052 4.052 22 C -0.116 4.116 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.166 4.166 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.068 0.932 32 H -0.004 1.004 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.014 0.986 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -25.494 9.657 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.397 4.397 8 H 0.090 0.910 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.088 0.912 15 C 0.019 3.981 16 N -0.370 5.370 17 C 0.294 3.706 18 O -0.448 6.448 19 C -0.134 4.134 20 C -0.084 4.084 21 C -0.052 4.052 22 C -0.134 4.134 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.178 4.178 28 C -0.203 4.203 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.249 0.751 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.032 0.968 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.268 -25.770 8.845 27.750 hybrid contribution -0.012 1.777 -0.493 1.844 sum 5.256 -23.993 8.352 25.943 Atomic orbital electron populations 1.70174 1.06762 1.26091 1.55255 1.25911 0.96187 1.01734 1.00776 0.85192 0.78081 0.79062 0.77584 1.21259 1.21700 1.19154 1.19540 0.92138 0.85119 1.42873 0.91028 1.44348 1.32192 1.02653 1.54577 1.21318 0.87631 0.98175 0.91134 1.23161 1.00801 0.83936 0.94408 1.87791 1.40563 1.33357 1.69121 1.22716 0.87077 0.94171 0.93902 0.91172 1.21091 1.01444 0.85897 0.89664 1.45866 1.72573 1.07768 1.10748 1.21202 0.75400 0.82783 0.91227 1.90684 1.50931 1.78988 1.24225 1.21262 1.05817 0.90512 0.95795 1.19713 0.88811 0.94889 1.04995 1.19149 0.95635 0.97212 0.93198 1.21138 0.99135 0.97894 0.95240 1.21382 0.95077 0.98576 1.00569 1.21430 0.98735 1.00528 0.94433 1.21440 0.99006 0.98705 0.95514 1.21232 0.93948 0.98127 1.00610 1.23250 0.98674 1.00107 0.95801 1.22882 0.97468 1.02820 0.97101 1.21692 0.98619 0.86561 0.94152 0.93901 0.91369 0.98552 0.92927 0.87313 0.92876 0.89776 0.75063 0.85729 0.86903 0.87282 0.85444 0.84444 0.83934 0.84179 0.86224 0.88258 0.89626 0.89162 0.96812 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.96 11.08 21.65 0.24 -54.72 16 2 C -0.05 -2.79 5.00 84.86 0.42 -2.37 16 3 Si 0.97 43.99 29.58 68.60 2.03 46.02 16 4 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.27 -14.48 9.65 84.03 0.81 -13.67 16 8 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 9 N -0.61 -30.80 3.04 -696.73 -2.12 -32.92 16 10 C 0.14 6.87 5.41 86.36 0.47 7.34 16 11 C 0.05 1.98 6.98 72.08 0.50 2.48 16 12 O -0.39 -13.66 10.13 -148.98 -1.51 -15.17 16 13 C 0.08 2.68 2.88 30.84 0.09 2.77 16 14 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.14 4.18 5.37 86.38 0.46 4.64 16 16 N -0.72 -16.94 5.45 -463.06 -2.52 -19.47 16 17 C 0.51 12.32 7.68 87.66 0.67 12.99 16 18 O -0.57 -18.31 15.15 -3.04 -0.05 -18.35 16 19 C -0.09 -1.50 5.62 29.85 0.17 -1.33 16 20 C -0.08 -1.47 1.18 -52.93 -0.06 -1.53 16 21 C -0.05 -1.08 4.95 -19.86 -0.10 -1.18 16 22 C -0.12 -2.74 9.00 22.27 0.20 -2.54 16 23 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.12 -2.13 9.47 22.27 0.21 -1.92 16 27 C -0.14 -1.81 9.88 30.59 0.30 -1.51 16 28 C -0.17 -3.00 8.63 30.59 0.26 -2.74 16 29 C 0.12 4.84 6.05 86.50 0.52 5.36 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.07 3.62 6.17 -2.39 -0.01 3.60 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.41 7.93 8.35 -92.70 -0.77 7.15 16 38 H 0.12 1.24 7.94 -2.38 -0.02 1.22 16 39 H 0.11 1.51 7.88 -2.39 -0.02 1.49 16 40 H 0.11 2.80 7.05 -2.91 -0.02 2.78 16 41 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 44 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.12 1.01 8.08 -2.39 -0.02 0.99 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.69 7.16 -2.39 -0.02 1.67 16 48 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 2.80 7.96 -2.39 -0.02 2.78 16 Total: -1.00 -70.71 405.93 1.84 -68.87 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.16 Total: 25.75 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 5.61 Total: -0.01 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.40 Total: -107.10 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.56 Total: -33.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.71 1.84 -68.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270657529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.048 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds