Wall clock time and date at job start Wed Apr 1 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99655 * 2 1 4 4 H 1.48508 * 109.47249 * 244.99748 * 3 2 1 5 5 H 1.48504 * 109.47181 * 4.99566 * 3 2 1 6 6 H 1.48494 * 109.47433 * 124.99809 * 3 2 1 7 7 C 1.38803 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99954 * 185.06434 * 7 2 1 9 9 N 1.36937 * 120.00314 * 5.06258 * 7 2 1 10 10 C 1.46497 * 120.00396 * 181.27274 * 9 7 2 11 11 C 1.53004 * 110.01546 * 293.91871 * 10 9 7 12 12 N 1.46494 * 109.46993 * 56.33807 * 11 10 9 13 13 C 1.34783 * 120.00085 * 88.22475 * 12 11 10 14 14 O 1.21280 * 119.99550 * 5.10350 * 13 12 11 15 15 C 1.50696 * 120.00046 * 185.10409 * 13 12 11 16 16 H 1.08999 * 109.20811 * 42.50100 * 15 13 12 17 17 O 1.42728 * 109.33955 * 162.09952 * 15 13 12 18 18 C 1.43078 * 113.10275 * 172.04719 * 17 15 13 19 19 C 1.52965 * 108.56060 * 289.31007 * 18 17 15 20 20 C 1.50751 * 109.72304 * 49.19244 * 19 18 17 21 21 C 1.38594 * 118.76752 * 163.05286 * 20 19 18 22 22 C 1.38073 * 120.27732 * 179.76178 * 21 20 19 23 23 C 1.38263 * 119.85948 * 0.02562 * 22 21 20 24 24 C 1.38053 * 119.89765 * 0.09813 * 23 22 21 25 25 C 1.37898 * 121.34749 * 343.00347 * 20 19 18 26 26 C 1.54270 * 110.03525 * 55.30807 * 10 9 7 27 27 C 1.54966 * 104.15790 * 95.75552 * 26 10 9 28 28 C 1.54891 * 102.77809 * 37.88969 * 27 26 10 29 29 C 1.53880 * 110.03372 * 172.52907 * 10 9 7 30 30 H 0.96994 * 120.00102 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00039 * 1.26964 * 9 7 2 32 32 H 1.08998 * 109.47100 * 296.33818 * 11 10 9 33 33 H 1.09005 * 109.47369 * 176.34245 * 11 10 9 34 34 H 0.97005 * 120.00205 * 268.21677 * 12 11 10 35 35 H 1.08993 * 109.56019 * 169.60902 * 18 17 15 36 36 H 1.09001 * 109.63631 * 49.05340 * 18 17 15 37 37 H 1.09000 * 109.42712 * 289.12656 * 19 18 17 38 38 H 1.09003 * 109.42051 * 169.24847 * 19 18 17 39 39 H 1.08004 * 119.86389 * 359.76915 * 21 20 19 40 40 H 1.07995 * 120.07155 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.05284 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.85065 * 180.02562 * 24 23 22 43 43 H 1.08995 * 110.48712 * 214.40561 * 26 10 9 44 44 H 1.09004 * 110.48032 * 337.04977 * 26 10 9 45 45 H 1.09001 * 110.71987 * 279.57390 * 27 26 10 46 46 H 1.08999 * 110.76088 * 156.22970 * 27 26 10 47 47 H 1.08995 * 110.48737 * 203.40155 * 28 27 26 48 48 H 1.08999 * 110.48164 * 80.76259 * 28 27 26 49 49 H 1.08991 * 110.03182 * 359.94905 * 29 10 9 50 50 H 1.09000 * 110.03114 * 121.33319 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0101 1.7506 -1.2689 5 1 1.2897 2.7438 0.1219 6 1 3.1930 1.6451 1.1468 7 6 2.0103 -1.2020 0.0005 8 1 3.0871 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 2.0598 -3.6555 -0.0750 11 6 2.9487 -3.7766 -1.3144 12 7 3.8492 -2.6232 -1.3840 13 6 5.0430 -2.6617 -0.7594 14 8 5.4115 -3.6825 -0.2182 15 6 5.9196 -1.4362 -0.7334 16 1 5.3040 -0.5590 -0.5341 17 8 6.8944 -1.5741 0.3000 18 6 7.8829 -0.5399 0.2810 19 6 8.7813 -0.7474 -0.9395 20 6 7.9316 -0.9500 -2.1682 21 6 8.5168 -0.8019 -3.4157 22 6 7.7688 -0.9851 -4.5617 23 6 6.4302 -1.3173 -4.4643 24 6 5.8460 -1.4625 -3.2219 25 6 6.5958 -1.2780 -2.0704 26 6 2.9201 -3.7418 1.2027 27 6 2.0402 -4.5385 2.1990 28 6 1.3622 -5.5933 1.2897 29 6 1.0694 -4.8319 -0.0197 30 1 -0.4850 0.8400 -0.0004 31 1 0.3641 -2.3835 -0.1962 32 1 2.3247 -3.8047 -2.2077 33 1 3.5358 -4.6929 -1.2524 34 1 3.5865 -1.8319 -1.8797 35 1 8.4822 -0.5912 1.1899 36 1 7.3946 0.4324 0.2152 37 1 9.4079 -1.6255 -0.7833 38 1 9.4140 0.1295 -1.0771 39 1 9.5624 -0.5421 -3.4918 40 1 8.2284 -0.8692 -5.5321 41 1 5.8423 -1.4617 -5.3586 42 1 4.8004 -1.7224 -3.1467 43 1 3.8485 -4.2764 1.0020 44 1 3.1290 -2.7445 1.5900 45 1 1.2953 -3.8896 2.6598 46 1 2.6560 -5.0211 2.9579 47 1 0.4352 -5.9467 1.7410 48 1 2.0388 -6.4272 1.1030 49 1 0.0456 -4.4581 -0.0132 50 1 1.2215 -5.4886 -0.8763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270777863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:38 Heat of formation + Delta-G solvation = -36.578475 kcal Electronic energy + Delta-G solvation = -32303.417974 eV Core-core repulsion = 28295.722421 eV Total energy + Delta-G solvation = -4007.695552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.75170 -39.20576 -37.79475 -37.22443 -34.20806 -33.23863 -32.97960 -31.88397 -30.47493 -29.58054 -28.33177 -27.73486 -26.17640 -24.09007 -23.93341 -23.27971 -22.26877 -20.48814 -20.13525 -19.86504 -18.43605 -17.45157 -17.12527 -16.84654 -16.41651 -15.81908 -15.58143 -15.26733 -14.90438 -14.53907 -14.46226 -14.13056 -13.96177 -13.63411 -13.54305 -13.41425 -13.21803 -12.92860 -12.56552 -12.40054 -12.30854 -11.96454 -11.83068 -11.73225 -11.48369 -11.15385 -10.92126 -10.78049 -10.70007 -10.56487 -10.52971 -10.34808 -10.17703 -9.99578 -9.91215 -9.67851 -9.62169 -9.40601 -8.92096 -8.81427 -8.59228 -8.17749 -6.93425 -5.80714 -3.05943 1.21165 1.29426 2.94985 3.33277 3.34844 3.39637 3.42600 3.71082 4.21346 4.52501 4.55805 4.58321 4.73188 4.94844 5.00286 5.05165 5.14199 5.27791 5.31574 5.35227 5.35427 5.40737 5.46259 5.57536 5.60857 5.67402 5.77974 5.79699 5.89091 5.92616 5.98262 6.04466 6.17068 6.22120 6.31329 6.33828 6.38078 6.42320 6.43301 6.46663 6.52129 6.67047 6.88146 6.89322 6.89766 7.02104 7.12385 7.21806 7.28972 7.69386 8.07600 8.40127 8.75480 9.49087 10.11024 10.47173 11.41957 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.004678 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.746007 B = 5983.635136 C = 6976.562536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.074 0.926 9 N -0.713 5.713 10 C 0.182 3.818 11 C 0.113 3.887 12 N -0.696 5.696 13 C 0.528 3.472 14 O -0.525 6.525 15 C 0.111 3.889 16 H 0.096 0.904 17 O -0.343 6.343 18 C 0.055 3.945 19 C -0.115 4.115 20 C -0.068 4.068 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.109 4.109 25 C -0.106 4.106 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.119 4.119 29 C -0.119 4.119 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 -3.492 -6.415 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.092 0.908 9 N -0.354 5.354 10 C 0.090 3.910 11 C -0.013 4.013 12 N -0.348 5.348 13 C 0.313 3.687 14 O -0.402 6.402 15 C 0.049 3.951 16 H 0.113 0.887 17 O -0.260 6.260 18 C -0.022 4.022 19 C -0.152 4.152 20 C -0.068 4.068 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.175 4.175 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.158 4.158 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.694 -4.227 -5.854 15.481 hybrid contribution -0.073 1.834 -0.441 1.887 sum 13.621 -2.394 -6.296 15.195 Atomic orbital electron populations 1.69647 1.04963 1.25534 1.57549 1.24705 0.95347 0.97282 1.03562 0.86561 0.78993 0.84710 0.77899 1.21295 1.21632 1.21121 1.19252 0.91476 0.83959 1.41494 0.90796 1.42575 1.06122 0.99479 1.87207 1.20653 0.90930 0.86888 0.92558 1.22206 0.91393 0.87902 0.99836 1.45915 1.16126 1.19965 1.52829 1.19573 0.81709 0.88322 0.79134 1.90614 1.73041 1.31872 1.44655 1.20836 0.90290 0.98365 0.85581 0.88709 1.88172 1.39242 1.49315 1.49298 1.22683 0.90016 0.91236 0.98244 1.21159 0.98037 1.03156 0.92886 1.19455 0.93060 0.99149 0.95114 1.21014 0.99759 1.01369 0.91716 1.21116 0.94396 0.99679 0.98276 1.21086 0.95224 0.99990 0.97367 1.21301 1.00462 0.99036 0.91934 1.19882 0.94289 1.01570 0.94921 1.23034 0.98114 1.00615 0.95732 1.22407 0.98786 0.97055 0.97362 1.22282 0.99528 0.97754 0.96100 1.22308 0.99800 0.96608 0.97078 0.93570 0.78287 0.91221 0.91156 0.75708 0.87797 0.92403 0.89474 0.89651 0.85968 0.85970 0.85675 0.85153 0.90683 0.91328 0.91887 0.93106 0.92640 0.92369 0.91355 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.07 55.49 0.73 -25.82 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.89 21.03 29.56 -169.99 -5.02 16.00 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -5.71 7.24 -15.06 -0.11 -5.82 16 8 H 0.07 1.79 5.18 -52.49 -0.27 1.52 16 9 N -0.71 -16.28 5.16 -46.19 -0.24 -16.52 16 10 C 0.18 3.48 0.95 -130.70 -0.12 3.36 16 11 C 0.11 1.97 5.09 -4.04 -0.02 1.95 16 12 N -0.70 -12.33 2.21 -60.29 -0.13 -12.47 16 13 C 0.53 10.00 5.19 -10.98 -0.06 9.94 16 14 O -0.53 -11.34 13.71 -13.78 -0.19 -11.53 16 15 C 0.11 1.91 3.13 -29.06 -0.09 1.82 16 16 H 0.10 1.67 8.10 -51.93 -0.42 1.25 16 17 O -0.34 -5.96 10.02 -54.57 -0.55 -6.51 16 18 C 0.06 0.69 6.84 37.14 0.25 0.95 16 19 C -0.12 -1.27 6.01 -27.88 -0.17 -1.44 16 20 C -0.07 -0.89 5.78 -104.59 -0.60 -1.50 16 21 C -0.12 -1.35 9.67 -39.51 -0.38 -1.74 16 22 C -0.12 -1.27 10.05 -39.63 -0.40 -1.66 16 23 C -0.12 -1.42 10.05 -39.64 -0.40 -1.82 16 24 C -0.11 -1.54 9.09 -39.50 -0.36 -1.90 16 25 C -0.11 -1.61 5.46 -104.62 -0.57 -2.18 16 26 C -0.14 -2.74 4.85 -25.03 -0.12 -2.86 16 27 C -0.12 -2.12 6.91 -24.70 -0.17 -2.29 16 28 C -0.12 -1.85 6.83 -25.07 -0.17 -2.02 16 29 C -0.12 -1.97 6.24 -25.61 -0.16 -2.13 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.38 9.50 7.30 -40.82 -0.30 9.20 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.22 7.34 -51.93 -0.38 0.84 16 34 H 0.41 7.05 6.32 -40.82 -0.26 6.79 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.81 5.07 -52.49 -0.27 1.55 16 43 H 0.07 1.57 5.39 -51.93 -0.28 1.29 16 44 H 0.07 1.60 6.69 -51.93 -0.35 1.26 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.18 7.46 -51.93 -0.39 0.79 16 50 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -30.96 382.13 -10.91 -41.87 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -7.51 Total: 19.00 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.75 Total: -9.79 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.35 Total: -54.80 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.74 Total: -18.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.96 -10.91 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270777863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.293 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds