Wall clock time and date at job start Wed Apr 1 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99655 * 2 1 4 4 H 1.48508 * 109.47249 * 244.99748 * 3 2 1 5 5 H 1.48504 * 109.47181 * 4.99566 * 3 2 1 6 6 H 1.48494 * 109.47433 * 124.99809 * 3 2 1 7 7 C 1.38803 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99954 * 185.06434 * 7 2 1 9 9 N 1.36937 * 120.00314 * 5.06258 * 7 2 1 10 10 C 1.46497 * 120.00396 * 181.27274 * 9 7 2 11 11 C 1.53004 * 110.01546 * 293.91871 * 10 9 7 12 12 N 1.46494 * 109.46993 * 56.33807 * 11 10 9 13 13 C 1.34783 * 120.00085 * 88.22475 * 12 11 10 14 14 O 1.21280 * 119.99550 * 5.10350 * 13 12 11 15 15 C 1.50696 * 120.00046 * 185.10409 * 13 12 11 16 16 H 1.08999 * 109.20811 * 42.50100 * 15 13 12 17 17 O 1.42728 * 109.33955 * 162.09952 * 15 13 12 18 18 C 1.43078 * 113.10275 * 172.04719 * 17 15 13 19 19 C 1.52965 * 108.56060 * 289.31007 * 18 17 15 20 20 C 1.50751 * 109.72304 * 49.19244 * 19 18 17 21 21 C 1.38594 * 118.76752 * 163.05286 * 20 19 18 22 22 C 1.38073 * 120.27732 * 179.76178 * 21 20 19 23 23 C 1.38263 * 119.85948 * 0.02562 * 22 21 20 24 24 C 1.38053 * 119.89765 * 0.09813 * 23 22 21 25 25 C 1.37898 * 121.34749 * 343.00347 * 20 19 18 26 26 C 1.54270 * 110.03525 * 55.30807 * 10 9 7 27 27 C 1.54966 * 104.15790 * 95.75552 * 26 10 9 28 28 C 1.54891 * 102.77809 * 37.88969 * 27 26 10 29 29 C 1.53880 * 110.03372 * 172.52907 * 10 9 7 30 30 H 0.96994 * 120.00102 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00039 * 1.26964 * 9 7 2 32 32 H 1.08998 * 109.47100 * 296.33818 * 11 10 9 33 33 H 1.09005 * 109.47369 * 176.34245 * 11 10 9 34 34 H 0.97005 * 120.00205 * 268.21677 * 12 11 10 35 35 H 1.08993 * 109.56019 * 169.60902 * 18 17 15 36 36 H 1.09001 * 109.63631 * 49.05340 * 18 17 15 37 37 H 1.09000 * 109.42712 * 289.12656 * 19 18 17 38 38 H 1.09003 * 109.42051 * 169.24847 * 19 18 17 39 39 H 1.08004 * 119.86389 * 359.76915 * 21 20 19 40 40 H 1.07995 * 120.07155 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.05284 * 180.02562 * 23 22 21 42 42 H 1.07996 * 119.85065 * 180.02562 * 24 23 22 43 43 H 1.08995 * 110.48712 * 214.40561 * 26 10 9 44 44 H 1.09004 * 110.48032 * 337.04977 * 26 10 9 45 45 H 1.09001 * 110.71987 * 279.57390 * 27 26 10 46 46 H 1.08999 * 110.76088 * 156.22970 * 27 26 10 47 47 H 1.08995 * 110.48737 * 203.40155 * 28 27 26 48 48 H 1.08999 * 110.48164 * 80.76259 * 28 27 26 49 49 H 1.08991 * 110.03182 * 359.94905 * 29 10 9 50 50 H 1.09000 * 110.03114 * 121.33319 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0101 1.7506 -1.2689 5 1 1.2897 2.7438 0.1219 6 1 3.1930 1.6451 1.1468 7 6 2.0103 -1.2020 0.0005 8 1 3.0871 -1.2038 0.0831 9 7 1.3297 -2.3857 -0.1036 10 6 2.0598 -3.6555 -0.0750 11 6 2.9487 -3.7766 -1.3144 12 7 3.8492 -2.6232 -1.3840 13 6 5.0430 -2.6617 -0.7594 14 8 5.4115 -3.6825 -0.2182 15 6 5.9196 -1.4362 -0.7334 16 1 5.3040 -0.5590 -0.5341 17 8 6.8944 -1.5741 0.3000 18 6 7.8829 -0.5399 0.2810 19 6 8.7813 -0.7474 -0.9395 20 6 7.9316 -0.9500 -2.1682 21 6 8.5168 -0.8019 -3.4157 22 6 7.7688 -0.9851 -4.5617 23 6 6.4302 -1.3173 -4.4643 24 6 5.8460 -1.4625 -3.2219 25 6 6.5958 -1.2780 -2.0704 26 6 2.9201 -3.7418 1.2027 27 6 2.0402 -4.5385 2.1990 28 6 1.3622 -5.5933 1.2897 29 6 1.0694 -4.8319 -0.0197 30 1 -0.4850 0.8400 -0.0004 31 1 0.3641 -2.3835 -0.1962 32 1 2.3247 -3.8047 -2.2077 33 1 3.5358 -4.6929 -1.2524 34 1 3.5865 -1.8319 -1.8797 35 1 8.4822 -0.5912 1.1899 36 1 7.3946 0.4324 0.2152 37 1 9.4079 -1.6255 -0.7833 38 1 9.4140 0.1295 -1.0771 39 1 9.5624 -0.5421 -3.4918 40 1 8.2284 -0.8692 -5.5321 41 1 5.8423 -1.4617 -5.3586 42 1 4.8004 -1.7224 -3.1467 43 1 3.8485 -4.2764 1.0020 44 1 3.1290 -2.7445 1.5900 45 1 1.2953 -3.8896 2.6598 46 1 2.6560 -5.0211 2.9579 47 1 0.4352 -5.9467 1.7410 48 1 2.0388 -6.4272 1.1030 49 1 0.0456 -4.4581 -0.0132 50 1 1.2215 -5.4886 -0.8763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270777863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:36 Heat of formation + Delta-G solvation = -53.787626 kcal Electronic energy + Delta-G solvation = -32304.164218 eV Core-core repulsion = 28295.722421 eV Total energy + Delta-G solvation = -4008.441797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.95033 -40.56973 -39.13457 -38.46088 -35.76744 -34.94734 -34.08221 -33.01530 -32.19058 -30.56908 -29.89005 -29.22214 -27.45075 -25.71125 -24.97007 -24.89289 -23.28768 -21.73219 -21.57978 -21.04179 -20.03612 -19.01998 -18.49854 -18.29636 -17.68252 -17.10704 -16.76386 -16.51790 -16.18928 -16.05657 -15.85136 -15.58042 -15.23589 -14.96108 -14.93615 -14.65317 -14.49510 -14.26619 -13.89460 -13.59734 -13.51950 -13.36122 -13.24432 -12.94352 -12.76471 -12.74572 -12.48258 -12.35393 -12.12368 -11.96302 -11.89425 -11.73504 -11.67723 -11.62520 -11.50427 -11.34119 -10.86072 -10.85099 -10.77531 -9.83424 -9.72217 -9.59698 -8.86166 -7.87176 -5.10297 0.24573 0.37267 1.41141 1.44959 1.48417 1.52997 2.05341 2.56681 2.74726 2.99006 3.43427 3.45232 3.61907 3.74894 3.81807 3.86083 3.91311 3.98871 4.02110 4.10536 4.21659 4.24738 4.25463 4.45957 4.51273 4.53472 4.60036 4.65850 4.69466 4.76227 4.80430 4.88054 4.89078 4.93063 4.99457 5.06325 5.10631 5.15095 5.18590 5.30173 5.42652 5.44816 5.52514 5.52750 5.55433 5.56249 5.64435 5.71815 5.93355 6.00933 6.36926 6.60529 7.27050 7.42203 8.20114 8.45872 9.36413 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010184 B = 0.004678 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.746007 B = 5983.635136 C = 6976.562536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.288 1.288 7 C -0.206 4.206 8 H 0.077 0.923 9 N -0.718 5.718 10 C 0.176 3.824 11 C 0.114 3.886 12 N -0.692 5.692 13 C 0.527 3.473 14 O -0.558 6.558 15 C 0.114 3.886 16 H 0.079 0.921 17 O -0.374 6.374 18 C 0.044 3.956 19 C -0.110 4.110 20 C -0.082 4.082 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.110 4.110 29 C -0.117 4.117 30 H 0.246 0.754 31 H 0.373 0.627 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.407 0.593 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.026 0.974 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.600 -4.171 -8.178 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.228 1.228 6 H -0.215 1.215 7 C -0.338 4.338 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.085 3.915 11 C -0.012 4.012 12 N -0.343 5.343 13 C 0.313 3.687 14 O -0.436 6.436 15 C 0.053 3.947 16 H 0.097 0.903 17 O -0.293 6.293 18 C -0.032 4.032 19 C -0.147 4.147 20 C -0.082 4.082 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.168 4.168 27 C -0.156 4.156 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.205 0.795 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.244 0.756 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.970 -4.924 -7.634 18.373 hybrid contribution -0.660 1.980 0.120 2.090 sum 15.310 -2.944 -7.513 17.306 Atomic orbital electron populations 1.69787 1.06164 1.25324 1.60458 1.25271 0.95944 0.99877 1.05281 0.85747 0.77698 0.81503 0.78337 1.19567 1.22830 1.21477 1.19484 0.91589 0.84613 1.38124 0.90537 1.42721 1.05740 1.00363 1.86929 1.20915 0.91519 0.86405 0.92680 1.22170 0.91317 0.88058 0.99638 1.45906 1.15941 1.20048 1.52427 1.19964 0.81912 0.88615 0.78222 1.90574 1.73804 1.33191 1.46072 1.20669 0.90341 0.96429 0.87277 0.90323 1.88112 1.40196 1.51230 1.49735 1.23030 0.89616 0.90156 1.00413 1.21190 0.97599 1.04777 0.91089 1.19805 0.92492 0.98925 0.96958 1.21410 1.01298 1.00137 0.90822 1.21563 0.93800 0.97726 0.99791 1.21394 0.96253 0.99494 0.97092 1.21378 1.00309 1.00262 0.92823 1.19847 0.95625 1.04206 0.93775 1.22900 0.98545 0.98482 0.96898 1.22396 0.98242 0.97375 0.97632 1.22262 1.00548 0.97201 0.94710 1.22310 0.98371 0.95882 0.98950 0.94543 0.79453 0.89335 0.90616 0.75594 0.85621 0.92353 0.89052 0.86359 0.82744 0.82624 0.83634 0.86024 0.91306 0.95466 0.93833 0.91748 0.90774 0.90459 0.92095 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.90 13.07 21.65 0.28 -56.61 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.94 44.42 29.56 68.60 2.03 46.45 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.21 -10.47 7.24 84.03 0.61 -9.87 16 8 H 0.08 3.84 5.18 -2.91 -0.02 3.82 16 9 N -0.72 -33.40 5.16 -300.06 -1.55 -34.95 16 10 C 0.18 6.71 0.95 4.33 0.00 6.71 16 11 C 0.11 3.93 5.09 86.38 0.44 4.37 16 12 N -0.69 -24.97 2.21 -463.06 -1.03 -26.00 16 13 C 0.53 20.56 5.19 87.65 0.45 21.01 16 14 O -0.56 -24.72 13.71 15.46 0.21 -24.51 16 15 C 0.11 4.08 3.13 29.09 0.09 4.17 16 16 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 17 O -0.37 -13.34 10.02 -130.49 -1.31 -14.65 16 18 C 0.04 1.07 6.84 71.97 0.49 1.56 16 19 C -0.11 -2.19 6.01 29.85 0.18 -2.01 16 20 C -0.08 -2.02 5.78 -19.84 -0.11 -2.13 16 21 C -0.12 -2.27 9.67 22.32 0.22 -2.05 16 22 C -0.11 -2.02 10.05 22.24 0.22 -1.80 16 23 C -0.12 -2.72 10.05 22.23 0.22 -2.50 16 24 C -0.13 -3.61 9.09 22.32 0.20 -3.41 16 25 C -0.13 -4.05 5.46 -19.86 -0.11 -4.16 16 26 C -0.13 -5.31 4.85 31.70 0.15 -5.15 16 27 C -0.12 -4.22 6.91 31.91 0.22 -4.00 16 28 C -0.11 -3.18 6.83 31.67 0.22 -2.96 16 29 C -0.12 -3.67 6.24 31.32 0.20 -3.47 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.37 18.88 7.30 -92.70 -0.68 18.20 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 2.57 7.34 -2.38 -0.02 2.55 16 34 H 0.41 14.50 6.32 -92.70 -0.59 13.92 16 35 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 1.39 8.07 -2.39 -0.02 1.37 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.12 3.45 5.07 -2.91 -0.01 3.43 16 43 H 0.07 2.93 5.39 -2.39 -0.01 2.92 16 44 H 0.03 1.31 6.69 -2.38 -0.02 1.29 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 2.03 7.46 -2.39 -0.02 2.01 16 50 H 0.09 2.25 7.67 -2.39 -0.02 2.23 16 Total: -1.00 -69.87 382.13 2.51 -67.36 By element: Atomic # 1 Polarization: 52.32 SS G_CDS: -0.29 Total: 52.03 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 4.16 Total: -9.12 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -2.29 Total: -117.56 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.10 Total: -39.16 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.87 2.51 -67.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270777863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.568 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds