Wall clock time and date at job start Wed Apr 1 2020 02:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46896 * 240.00129 * 3 2 1 5 5 H 1.48501 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47334 * 120.00229 * 3 2 1 7 7 C 1.38808 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 145.97817 * 7 2 1 9 9 N 1.36934 * 120.00062 * 325.98205 * 7 2 1 10 10 C 1.47428 * 125.64941 * 348.09168 * 9 7 2 11 11 C 1.54909 * 104.83177 * 204.09213 * 10 9 7 12 12 C 1.55156 * 101.58520 * 322.99367 * 11 10 9 13 13 O 1.42898 * 110.71754 * 276.95875 * 12 11 10 14 14 C 1.52995 * 110.72190 * 153.86355 * 12 11 10 15 15 N 1.46501 * 109.47435 * 185.00036 * 14 12 11 16 16 C 1.34774 * 119.99960 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99702 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.38256 * 120.00190 * 269.72752 * 19 18 16 21 21 C 1.38209 * 120.00049 * 179.78284 * 20 19 18 22 22 C 1.38261 * 120.00015 * 0.45052 * 21 20 19 23 23 C 1.38214 * 119.99848 * 359.80242 * 22 21 20 24 24 C 1.50693 * 120.00189 * 180.02562 * 23 22 21 25 25 C 1.53003 * 117.49807 * 8.72725 * 24 23 22 26 26 C 1.52994 * 117.49892 * 300.07030 * 24 23 22 27 27 C 1.38210 * 119.99524 * 90.00100 * 19 18 16 28 28 C 1.47022 * 125.64790 * 167.78848 * 9 7 2 29 29 H 0.97004 * 119.99808 * 174.25644 * 1 2 3 30 30 H 1.08995 * 110.36440 * 322.93608 * 10 9 7 31 31 H 1.09004 * 110.36476 * 85.25907 * 10 9 7 32 32 H 1.09008 * 111.00348 * 81.06686 * 11 10 9 33 33 H 1.09000 * 111.00478 * 204.91821 * 11 10 9 34 34 H 0.96701 * 113.99984 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.47435 * 305.00101 * 14 12 11 36 36 H 1.09008 * 109.47052 * 64.99670 * 14 12 11 37 37 H 0.96998 * 119.99392 * 359.97438 * 15 14 12 38 38 H 1.08997 * 109.47644 * 300.00024 * 18 16 15 39 39 H 1.09004 * 109.46920 * 60.00089 * 18 16 15 40 40 H 1.08004 * 119.99861 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.00338 * 180.27484 * 21 20 19 42 42 H 1.07998 * 120.00204 * 179.83567 * 22 21 20 43 43 H 1.08997 * 115.55392 * 154.39361 * 24 23 22 44 44 H 1.09003 * 117.49660 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50024 * 145.01704 * 25 24 23 46 46 H 1.09000 * 117.49859 * 214.97645 * 26 24 23 47 47 H 1.09001 * 117.50509 * 359.97436 * 26 24 23 48 48 H 1.07998 * 120.00252 * 359.97438 * 27 19 18 49 49 H 1.09001 * 109.88532 * 298.39571 * 28 9 7 50 50 H 1.09005 * 109.88581 * 59.55849 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9516 -1.2823 -0.5228 9 7 1.5014 -2.2862 0.6645 10 6 0.3735 -2.2609 1.6136 11 6 0.5848 -3.5038 2.5137 12 6 1.1334 -4.5370 1.4946 13 8 0.0635 -5.1628 0.7834 14 6 1.9987 -5.5845 2.1981 15 7 2.5980 -6.4734 1.1997 16 6 3.4046 -7.4797 1.5911 17 8 3.6346 -7.6491 2.7697 18 6 4.0206 -8.3945 0.5640 19 6 4.8730 -9.4261 1.2570 20 6 6.2123 -9.1734 1.4892 21 6 6.9930 -10.1177 2.1288 22 6 6.4368 -11.3189 2.5280 23 6 5.0991 -11.5737 2.2912 24 6 4.4927 -12.8826 2.7269 25 6 5.3478 -13.8006 3.6027 26 6 5.0845 -14.1655 2.1397 27 6 4.3171 -10.6272 1.6553 28 6 1.9853 -3.6693 0.5441 29 1 -0.4850 -0.8359 -0.0841 30 1 0.4014 -1.3501 2.2116 31 1 -0.5736 -2.3361 1.0793 32 1 1.3164 -3.3000 3.2957 33 1 -0.3591 -3.8409 2.9422 34 1 0.3532 -5.8174 0.1333 35 1 2.7878 -5.0855 2.7606 36 1 1.3801 -6.1683 2.8798 37 1 2.4137 -6.3381 0.2570 38 1 3.2313 -8.8932 0.0016 39 1 4.6394 -7.8109 -0.1177 40 1 6.6475 -8.2365 1.1743 41 1 8.0381 -9.9186 2.3142 42 1 7.0474 -12.0579 3.0254 43 1 3.4193 -12.8639 2.9155 44 1 6.3489 -13.4575 3.8641 45 1 4.8370 -14.3860 4.3672 46 1 4.4004 -14.9909 1.9422 47 1 5.9122 -14.0628 1.4379 48 1 3.2719 -10.8262 1.4704 49 1 1.8673 -4.0154 -0.4827 50 1 3.0339 -3.7220 0.8370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271166511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:57 Heat of formation + Delta-G solvation = -14.629764 kcal Electronic energy + Delta-G solvation = -29288.854358 eV Core-core repulsion = 25282.110573 eV Total energy + Delta-G solvation = -4006.743785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.42769 -39.63659 -38.58797 -37.08120 -35.39662 -34.22998 -32.92868 -32.26445 -31.02692 -29.69331 -28.83939 -27.46554 -25.41289 -24.10465 -23.60873 -22.90913 -22.28165 -21.08562 -20.26339 -20.09674 -19.73446 -17.78231 -17.47922 -17.17467 -16.47834 -16.29716 -15.77901 -15.54281 -15.13165 -14.79449 -14.56161 -14.30241 -14.16855 -13.93159 -13.73307 -13.38629 -13.35290 -13.14634 -12.98990 -12.83954 -12.52347 -12.44076 -12.01105 -11.94914 -11.84453 -11.45881 -11.22901 -11.06199 -10.97267 -10.79314 -10.70662 -10.64994 -10.50438 -10.42183 -10.04470 -9.94852 -9.77228 -9.55917 -9.16554 -8.97076 -8.71680 -8.36077 -7.00424 -6.17624 -3.11319 1.08532 1.18447 2.54510 2.99682 3.35953 3.49125 3.54592 3.72072 3.77774 4.15175 4.30761 4.39198 4.50419 4.52141 4.59462 4.68537 4.68976 4.75540 4.86852 4.89275 5.02102 5.03696 5.14745 5.19281 5.21933 5.24481 5.27093 5.38551 5.48197 5.49932 5.65844 5.69462 5.72562 5.79414 5.84139 5.85886 5.98148 6.16190 6.23982 6.25586 6.29977 6.34854 6.38973 6.41124 6.46026 6.78313 6.93863 7.06659 7.33820 7.74240 7.78374 8.11404 8.45310 8.97374 9.78926 10.33835 11.16869 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.001860 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.436111 B =15047.720988 C =15699.206530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.020 4.020 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.285 1.285 6 H -0.294 1.294 7 C -0.348 4.348 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.148 3.852 11 C -0.119 4.119 12 C 0.106 3.894 13 O -0.543 6.543 14 C 0.105 3.895 15 N -0.729 5.729 16 C 0.515 3.485 17 O -0.531 6.531 18 C -0.104 4.104 19 C -0.060 4.060 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.052 4.052 24 C -0.117 4.117 25 C -0.177 4.177 26 C -0.170 4.170 27 C -0.098 4.098 28 C 0.118 3.882 29 H 0.270 0.730 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.366 0.634 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.024 0.976 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 -26.631 2.832 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.223 4.223 3 Si 0.886 3.114 4 H -0.220 1.220 5 H -0.211 1.211 6 H -0.221 1.221 7 C -0.475 4.475 8 H 0.084 0.916 9 N -0.325 5.325 10 C 0.023 3.977 11 C -0.158 4.158 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.019 4.019 15 N -0.382 5.382 16 C 0.301 3.699 17 O -0.407 6.407 18 C -0.144 4.144 19 C -0.060 4.060 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.052 4.052 24 C -0.135 4.135 25 C -0.214 4.214 26 C -0.207 4.207 27 C -0.116 4.116 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.212 0.788 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.137 0.863 49 H 0.042 0.958 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.622 -24.598 4.090 26.728 hybrid contribution 0.456 -1.909 -1.006 2.206 sum 10.078 -26.508 3.084 28.526 Atomic orbital electron populations 1.70783 1.06871 1.30226 1.46583 1.25672 0.96163 1.00931 0.99559 0.83648 0.75107 0.76365 0.76240 1.22035 1.21095 1.22103 1.19659 1.04058 0.89596 1.34176 0.91588 1.44512 1.37566 1.01827 1.48584 1.21502 0.91387 0.94591 0.90264 1.22824 1.01124 0.95266 0.96582 1.22532 0.86907 0.90951 0.93187 1.86628 1.33557 1.58612 1.55998 1.22030 0.96981 0.91455 0.91391 1.45997 1.49866 1.31626 1.10732 1.20488 0.78607 0.80865 0.89990 1.90737 1.60093 1.71483 1.18345 1.20699 1.00107 0.96124 0.97486 1.19216 0.93778 0.94061 0.98949 1.20995 0.93434 0.99126 0.99107 1.21055 0.99819 0.93824 0.98556 1.20997 0.94742 0.97538 1.00797 1.19035 0.93578 0.94225 0.98352 1.21036 0.98871 0.88774 1.04859 1.23075 1.01433 1.03010 0.93885 1.23034 1.03440 0.97663 0.96531 1.20735 0.99368 0.93027 0.98491 1.21918 0.95935 0.87192 0.95833 0.91948 0.92770 0.95221 0.90106 0.90560 0.78785 0.90295 0.90717 0.76681 0.87821 0.87687 0.86135 0.86014 0.86177 0.86977 0.88342 0.88433 0.88476 0.88588 0.86251 0.95807 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.37 12.87 55.49 0.71 -26.66 16 2 C -0.02 -0.59 4.95 -17.43 -0.09 -0.67 16 3 Si 1.06 25.28 30.03 -169.99 -5.10 20.18 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.35 -9.82 9.97 -15.06 -0.15 -9.97 16 8 H 0.07 1.86 8.02 -52.48 -0.42 1.44 16 9 N -0.60 -15.06 3.33 -170.06 -0.57 -15.62 16 10 C 0.15 3.47 5.33 -2.53 -0.01 3.46 16 11 C -0.12 -2.16 6.26 -24.58 -0.15 -2.31 16 12 C 0.11 1.73 0.93 -88.78 -0.08 1.65 16 13 O -0.54 -8.63 13.10 -35.23 -0.46 -9.10 16 14 C 0.11 1.48 4.74 -4.04 -0.02 1.46 16 15 N -0.73 -8.33 5.13 -60.29 -0.31 -8.64 16 16 C 0.51 6.31 7.82 -10.99 -0.09 6.22 16 17 O -0.53 -8.76 16.03 5.56 0.09 -8.67 16 18 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 19 C -0.06 -0.62 4.37 -104.62 -0.46 -1.08 16 20 C -0.11 -1.12 9.70 -39.59 -0.38 -1.50 16 21 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.14 9.30 -39.58 -0.37 -1.51 16 23 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 24 C -0.12 -0.93 6.04 -91.78 -0.55 -1.48 16 25 C -0.18 -1.15 9.86 -26.69 -0.26 -1.41 16 26 C -0.17 -1.07 10.17 -26.70 -0.27 -1.34 16 27 C -0.10 -1.01 9.39 -39.58 -0.37 -1.38 16 28 C 0.12 2.33 6.04 -3.06 -0.02 2.31 16 29 H 0.27 8.25 6.45 -40.82 -0.26 7.99 16 30 H 0.05 1.38 7.82 -51.93 -0.41 0.97 16 31 H 0.03 0.76 7.03 -51.93 -0.36 0.40 16 32 H 0.08 1.37 8.04 -51.92 -0.42 0.95 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.37 4.22 8.05 45.56 0.37 4.59 16 35 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.40 3.64 7.37 -40.82 -0.30 3.34 16 38 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.89 6.02 -52.49 -0.32 0.57 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.10 0.61 6.18 -51.93 -0.32 0.28 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 49 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 50 H 0.03 0.64 7.82 -51.93 -0.41 0.23 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -35.55 406.37 -11.08 -46.63 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.13 Total: 6.97 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -4.43 Total: -11.21 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.16 Total: -50.92 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.37 Total: -17.77 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.10 Total: 20.18 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.55 -11.08 -46.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271166511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.001 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds