Wall clock time and date at job start Wed Apr 1 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46896 * 240.00129 * 3 2 1 5 5 H 1.48501 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47334 * 120.00229 * 3 2 1 7 7 C 1.38808 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 145.97817 * 7 2 1 9 9 N 1.36934 * 120.00062 * 325.98205 * 7 2 1 10 10 C 1.47428 * 125.64941 * 348.09168 * 9 7 2 11 11 C 1.54909 * 104.83177 * 204.09213 * 10 9 7 12 12 C 1.55156 * 101.58520 * 322.99367 * 11 10 9 13 13 O 1.42898 * 110.71754 * 276.95875 * 12 11 10 14 14 C 1.52995 * 110.72190 * 153.86355 * 12 11 10 15 15 N 1.46501 * 109.47435 * 185.00036 * 14 12 11 16 16 C 1.34774 * 119.99960 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99702 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.38256 * 120.00190 * 269.72752 * 19 18 16 21 21 C 1.38209 * 120.00049 * 179.78284 * 20 19 18 22 22 C 1.38261 * 120.00015 * 0.45052 * 21 20 19 23 23 C 1.38214 * 119.99848 * 359.80242 * 22 21 20 24 24 C 1.50693 * 120.00189 * 180.02562 * 23 22 21 25 25 C 1.53003 * 117.49807 * 8.72725 * 24 23 22 26 26 C 1.52994 * 117.49892 * 300.07030 * 24 23 22 27 27 C 1.38210 * 119.99524 * 90.00100 * 19 18 16 28 28 C 1.47022 * 125.64790 * 167.78848 * 9 7 2 29 29 H 0.97004 * 119.99808 * 174.25644 * 1 2 3 30 30 H 1.08995 * 110.36440 * 322.93608 * 10 9 7 31 31 H 1.09004 * 110.36476 * 85.25907 * 10 9 7 32 32 H 1.09008 * 111.00348 * 81.06686 * 11 10 9 33 33 H 1.09000 * 111.00478 * 204.91821 * 11 10 9 34 34 H 0.96701 * 113.99984 * 179.97438 * 13 12 11 35 35 H 1.09001 * 109.47435 * 305.00101 * 14 12 11 36 36 H 1.09008 * 109.47052 * 64.99670 * 14 12 11 37 37 H 0.96998 * 119.99392 * 359.97438 * 15 14 12 38 38 H 1.08997 * 109.47644 * 300.00024 * 18 16 15 39 39 H 1.09004 * 109.46920 * 60.00089 * 18 16 15 40 40 H 1.08004 * 119.99861 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.00338 * 180.27484 * 21 20 19 42 42 H 1.07998 * 120.00204 * 179.83567 * 22 21 20 43 43 H 1.08997 * 115.55392 * 154.39361 * 24 23 22 44 44 H 1.09003 * 117.49660 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.50024 * 145.01704 * 25 24 23 46 46 H 1.09000 * 117.49859 * 214.97645 * 26 24 23 47 47 H 1.09001 * 117.50509 * 359.97436 * 26 24 23 48 48 H 1.07998 * 120.00252 * 359.97438 * 27 19 18 49 49 H 1.09001 * 109.88532 * 298.39571 * 28 9 7 50 50 H 1.09005 * 109.88581 * 59.55849 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9516 -1.2823 -0.5228 9 7 1.5014 -2.2862 0.6645 10 6 0.3735 -2.2609 1.6136 11 6 0.5848 -3.5038 2.5137 12 6 1.1334 -4.5370 1.4946 13 8 0.0635 -5.1628 0.7834 14 6 1.9987 -5.5845 2.1981 15 7 2.5980 -6.4734 1.1997 16 6 3.4046 -7.4797 1.5911 17 8 3.6346 -7.6491 2.7697 18 6 4.0206 -8.3945 0.5640 19 6 4.8730 -9.4261 1.2570 20 6 6.2123 -9.1734 1.4892 21 6 6.9930 -10.1177 2.1288 22 6 6.4368 -11.3189 2.5280 23 6 5.0991 -11.5737 2.2912 24 6 4.4927 -12.8826 2.7269 25 6 5.3478 -13.8006 3.6027 26 6 5.0845 -14.1655 2.1397 27 6 4.3171 -10.6272 1.6553 28 6 1.9853 -3.6693 0.5441 29 1 -0.4850 -0.8359 -0.0841 30 1 0.4014 -1.3501 2.2116 31 1 -0.5736 -2.3361 1.0793 32 1 1.3164 -3.3000 3.2957 33 1 -0.3591 -3.8409 2.9422 34 1 0.3532 -5.8174 0.1333 35 1 2.7878 -5.0855 2.7606 36 1 1.3801 -6.1683 2.8798 37 1 2.4137 -6.3381 0.2570 38 1 3.2313 -8.8932 0.0016 39 1 4.6394 -7.8109 -0.1177 40 1 6.6475 -8.2365 1.1743 41 1 8.0381 -9.9186 2.3142 42 1 7.0474 -12.0579 3.0254 43 1 3.4193 -12.8639 2.9155 44 1 6.3489 -13.4575 3.8641 45 1 4.8370 -14.3860 4.3672 46 1 4.4004 -14.9909 1.9422 47 1 5.9122 -14.0628 1.4379 48 1 3.2719 -10.8262 1.4704 49 1 1.8673 -4.0154 -0.4827 50 1 3.0339 -3.7220 0.8370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271166511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:55 Heat of formation + Delta-G solvation = -38.096944 kcal Electronic energy + Delta-G solvation = -29289.871971 eV Core-core repulsion = 25282.110573 eV Total energy + Delta-G solvation = -4007.761398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.35523 -40.60609 -39.80687 -37.69828 -37.03832 -35.34644 -34.19370 -33.61802 -31.69950 -31.35932 -30.21232 -28.52527 -27.05799 -25.32279 -24.64536 -23.50215 -22.95124 -22.46355 -21.60444 -21.47654 -20.51739 -19.57006 -18.74712 -17.86547 -17.66155 -17.02668 -16.81747 -16.46381 -16.41427 -15.94656 -15.70741 -15.64533 -15.26541 -15.10245 -15.03716 -14.88127 -14.69277 -14.39109 -14.04119 -13.71915 -13.57689 -13.39455 -13.11540 -12.86164 -12.74937 -12.55046 -12.52238 -12.46911 -12.26749 -12.07163 -11.91759 -11.90098 -11.85931 -11.67741 -11.56119 -11.23860 -11.10526 -10.98895 -10.46988 -10.21055 -9.68926 -9.39679 -9.07065 -8.41131 -5.30265 0.37513 0.47432 1.56675 1.60998 1.64499 1.83965 2.07849 2.61652 2.70618 3.02141 3.14922 3.16164 3.30544 3.54805 3.56234 3.71702 3.73760 3.79984 3.94557 4.00467 4.01739 4.14406 4.18139 4.24915 4.34043 4.36752 4.40980 4.51317 4.59504 4.61584 4.69349 4.75929 4.79138 4.79203 4.83333 4.92801 4.96156 5.05555 5.10625 5.13930 5.18633 5.23072 5.24319 5.29323 5.56123 5.64030 5.64852 5.69487 6.10317 6.26417 6.44118 6.69644 6.84248 7.18860 7.67795 8.26297 8.92993 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024082 B = 0.001860 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.436111 B =15047.720988 C =15699.206530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.075 4.075 3 Si 1.110 2.890 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.356 4.356 8 H 0.063 0.937 9 N -0.621 5.621 10 C 0.151 3.849 11 C -0.111 4.111 12 C 0.127 3.873 13 O -0.554 6.554 14 C 0.120 3.880 15 N -0.720 5.720 16 C 0.516 3.484 17 O -0.576 6.576 18 C -0.097 4.097 19 C -0.073 4.073 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.061 4.061 24 C -0.135 4.135 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.116 4.116 28 C 0.114 3.886 29 H 0.253 0.747 30 H 0.023 0.977 31 H 0.002 0.998 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.386 0.614 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.030 0.970 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 -28.406 2.641 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.272 4.272 3 Si 0.934 3.066 4 H -0.198 1.198 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.484 4.484 8 H 0.081 0.919 9 N -0.349 5.349 10 C 0.026 3.974 11 C -0.150 4.150 12 C 0.085 3.915 13 O -0.362 6.362 14 C -0.005 4.005 15 N -0.373 5.373 16 C 0.304 3.696 17 O -0.455 6.455 18 C -0.136 4.136 19 C -0.074 4.074 20 C -0.146 4.146 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.061 4.061 24 C -0.154 4.154 25 C -0.211 4.211 26 C -0.197 4.197 27 C -0.134 4.134 28 C -0.011 4.011 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.020 0.980 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.114 0.886 48 H 0.145 0.855 49 H 0.048 0.952 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.906 -26.422 3.855 28.843 hybrid contribution 0.073 -1.448 -0.971 1.745 sum 10.978 -27.870 2.884 30.093 Atomic orbital electron populations 1.70910 1.07856 1.29206 1.49566 1.27064 0.96254 1.04405 0.99463 0.82931 0.74060 0.72182 0.77380 1.19840 1.21826 1.20849 1.19937 1.03756 0.91011 1.33686 0.91869 1.44781 1.37866 1.03551 1.48663 1.21360 0.89911 0.95876 0.90285 1.22759 1.02714 0.93160 0.96363 1.22179 0.86561 0.90849 0.91869 1.86599 1.33565 1.59286 1.56742 1.21701 0.96285 0.90982 0.91486 1.45876 1.49457 1.30990 1.11009 1.21068 0.77808 0.80708 0.89992 1.90724 1.61651 1.72642 1.20477 1.20747 1.00855 0.95410 0.96601 1.19457 0.94131 0.94533 0.99268 1.21239 0.93857 0.99742 0.99751 1.21352 1.00759 0.93822 0.98210 1.21252 0.94972 0.97945 1.00878 1.19319 0.93885 0.94909 0.97973 1.21084 0.99071 0.88699 1.06499 1.23169 1.01332 1.02349 0.94287 1.23084 1.03303 0.96928 0.96398 1.20968 0.99953 0.93425 0.99014 1.22115 0.96667 0.85250 0.97090 0.93684 0.95881 0.98030 0.88701 0.88760 0.76401 0.91248 0.90341 0.75091 0.85015 0.85523 0.85462 0.84355 0.84665 0.86957 0.88116 0.87442 0.87214 0.88644 0.85527 0.95235 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.11 12.87 21.65 0.28 -57.83 16 2 C -0.07 -4.34 4.95 84.86 0.42 -3.92 16 3 Si 1.11 51.35 30.03 68.60 2.06 53.41 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.36 -20.25 9.97 84.03 0.84 -19.41 16 8 H 0.06 3.55 8.02 -2.91 -0.02 3.53 16 9 N -0.62 -31.54 3.33 -691.95 -2.30 -33.84 16 10 C 0.15 7.27 5.33 86.85 0.46 7.73 16 11 C -0.11 -3.93 6.26 31.99 0.20 -3.73 16 12 C 0.13 3.94 0.93 -9.60 -0.01 3.93 16 13 O -0.55 -16.44 13.10 -148.98 -1.95 -18.39 16 14 C 0.12 3.11 4.74 86.38 0.41 3.52 16 15 N -0.72 -14.64 5.13 -463.06 -2.37 -17.01 16 16 C 0.52 11.62 7.82 87.66 0.69 12.30 16 17 O -0.58 -18.41 16.03 -3.03 -0.05 -18.46 16 18 C -0.10 -1.45 5.83 29.10 0.17 -1.28 16 19 C -0.07 -1.43 4.37 -19.87 -0.09 -1.52 16 20 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 21 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 22 C -0.13 -2.34 9.30 22.27 0.21 -2.14 16 23 C -0.06 -1.13 5.61 -19.87 -0.11 -1.24 16 24 C -0.14 -1.99 6.04 -11.54 -0.07 -2.06 16 25 C -0.17 -1.99 9.86 30.62 0.30 -1.69 16 26 C -0.16 -1.76 10.17 30.61 0.31 -1.45 16 27 C -0.12 -2.26 9.39 22.27 0.21 -2.05 16 28 C 0.11 4.39 6.04 86.73 0.52 4.91 16 29 H 0.25 16.18 6.45 -92.71 -0.60 15.58 16 30 H 0.02 1.22 7.82 -2.39 -0.02 1.20 16 31 H 0.00 0.10 7.03 -2.39 -0.02 0.08 16 32 H 0.09 3.08 8.04 -2.38 -0.02 3.06 16 33 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.39 7.81 8.05 -74.06 -0.60 7.21 16 35 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 36 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.41 6.24 7.37 -92.71 -0.68 5.55 16 38 H 0.13 1.22 8.09 -2.39 -0.02 1.20 16 39 H 0.13 1.35 8.08 -2.38 -0.02 1.34 16 40 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.14 1.83 6.02 -2.91 -0.02 1.82 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.10 1.08 6.18 -2.39 -0.01 1.07 16 45 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 49 H 0.03 1.11 8.07 -2.39 -0.02 1.10 16 50 H 0.04 1.46 7.82 -2.38 -0.02 1.44 16 Total: -1.00 -78.83 406.37 0.41 -78.42 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.15 Total: 26.11 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.90 Total: -12.40 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.40 Total: -108.68 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -2.00 Total: -36.85 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.06 Total: 53.41 kcal Total: -78.83 0.41 -78.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271166511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.323 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds