Wall clock time and date at job start Wed Apr 1 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47004 * 265.96807 * 3 2 1 5 5 H 1.48506 * 109.47441 * 25.96705 * 3 2 1 6 6 H 1.48499 * 109.47299 * 145.96708 * 3 2 1 7 7 C 1.38812 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99911 * 345.98428 * 7 2 1 9 9 N 1.36934 * 119.99974 * 165.98873 * 7 2 1 10 10 C 1.47435 * 125.64676 * 325.99424 * 9 7 2 11 11 C 1.54901 * 104.83284 * 204.16761 * 10 9 7 12 12 C 1.55162 * 101.58064 * 322.99085 * 11 10 9 13 13 O 1.42898 * 110.87316 * 277.06800 * 12 11 10 14 14 C 1.53009 * 110.71671 * 153.86498 * 12 11 10 15 15 N 1.46493 * 109.46736 * 190.02138 * 14 12 11 16 16 C 1.34780 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99654 * 4.61402 * 16 15 14 18 18 C 1.50702 * 120.00251 * 184.61914 * 16 15 14 19 19 C 1.50691 * 112.84805 * 296.31312 * 18 16 15 20 20 C 1.38233 * 120.00200 * 114.83134 * 19 18 16 21 21 C 1.38235 * 120.00402 * 180.02562 * 20 19 18 22 22 C 1.38235 * 119.99809 * 0.02562 * 21 20 19 23 23 C 1.38242 * 120.00047 * 359.97383 * 22 21 20 24 24 C 1.38230 * 119.99718 * 0.04515 * 23 22 21 25 25 C 1.53781 * 113.61371 * 67.51069 * 18 16 15 26 26 C 1.53957 * 87.02262 * 89.23098 * 25 18 16 27 27 C 1.53783 * 113.61008 * 165.11657 * 18 16 15 28 28 C 1.47020 * 125.65095 * 146.04260 * 9 7 2 29 29 H 0.97003 * 119.99971 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.36746 * 323.00923 * 10 9 7 31 31 H 1.09000 * 110.36047 * 85.32822 * 10 9 7 32 32 H 1.08998 * 111.00778 * 204.91828 * 11 10 9 33 33 H 1.08991 * 111.00827 * 81.06679 * 11 10 9 34 34 H 0.96699 * 114.00028 * 177.45773 * 13 12 11 35 35 H 1.09001 * 109.46725 * 70.02713 * 14 12 11 36 36 H 1.08990 * 109.47172 * 310.02414 * 14 12 11 37 37 H 0.97001 * 120.00776 * 0.02562 * 15 14 12 38 38 H 1.08002 * 119.99781 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00337 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00293 * 179.70075 * 22 21 20 41 41 H 1.07998 * 120.00101 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99671 * 179.97438 * 24 23 22 43 43 H 1.08998 * 113.61057 * 203.74624 * 25 18 16 44 44 H 1.08995 * 113.61674 * 334.65021 * 25 18 16 45 45 H 1.09004 * 113.53073 * 270.81162 * 26 25 18 46 46 H 1.08996 * 113.74815 * 139.94098 * 26 25 18 47 47 H 1.08994 * 113.61779 * 25.34825 * 27 18 16 48 48 H 1.09007 * 113.61056 * 156.16943 * 27 18 16 49 49 H 1.08991 * 109.88211 * 59.48205 * 28 9 7 50 50 H 1.08999 * 109.87687 * 298.31716 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5829 1.9972 -1.3966 5 1 1.4076 2.6759 0.6130 6 1 3.5025 1.4664 0.7836 7 6 2.0103 -1.2021 0.0005 8 1 1.4944 -2.1234 0.2275 9 7 3.3491 -1.2199 -0.2866 10 6 4.0358 -0.3267 -1.2375 11 6 5.3057 -1.1039 -1.6652 12 6 5.7043 -1.8034 -0.3389 13 8 6.4547 -0.9202 0.4970 14 6 6.4947 -3.0834 -0.6183 15 7 6.6498 -3.8426 0.6249 16 6 7.3175 -5.0134 0.6207 17 8 7.8614 -5.3976 -0.3929 18 6 7.3881 -5.8451 1.8755 19 6 8.1222 -5.1537 2.9952 20 6 7.4474 -4.7977 4.1479 21 6 8.1205 -4.1630 5.1750 22 6 9.4685 -3.8837 5.0490 23 6 10.1434 -4.2396 3.8963 24 6 9.4701 -4.8740 2.8692 25 6 6.0334 -6.4365 2.2996 26 6 6.3767 -7.6491 1.4153 27 6 7.8562 -7.2895 1.6314 28 6 4.3395 -2.1335 0.3016 29 1 -0.4850 0.8401 -0.0004 30 1 3.4008 -0.1325 -2.1018 31 1 4.3099 0.6085 -0.7492 32 1 6.0880 -0.4215 -1.9974 33 1 5.0737 -1.8360 -2.4387 34 1 6.6940 -1.2984 1.3542 35 1 7.4780 -2.8246 -1.0111 36 1 5.9592 -3.6888 -1.3494 37 1 6.2721 -3.5028 1.4512 38 1 6.3939 -5.0148 4.2458 39 1 7.5932 -3.8845 6.0754 40 1 9.9934 -3.3834 5.8494 41 1 11.1965 -4.0211 3.7977 42 1 9.9973 -5.1518 1.9684 43 1 5.9739 -6.6737 3.3618 44 1 5.1766 -5.8642 1.9440 45 1 6.0476 -7.5410 0.3817 46 1 6.0915 -8.6059 1.8525 47 1 8.4687 -7.4049 0.7373 48 1 8.2972 -7.7599 2.5103 49 1 4.0673 -3.1659 0.0829 50 1 4.3896 -1.9815 1.3798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271167463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:29 Heat of formation + Delta-G solvation = -10.579153 kcal Electronic energy + Delta-G solvation = -31186.328724 eV Core-core repulsion = 27179.760587 eV Total energy + Delta-G solvation = -4006.568137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.28844 -39.40008 -38.67904 -37.30924 -35.36037 -34.30659 -32.28858 -31.55458 -31.19205 -30.12330 -28.69069 -26.81911 -26.11867 -25.52483 -23.50506 -22.65091 -22.06851 -21.52972 -20.90405 -20.02888 -19.35150 -17.75233 -17.08464 -16.99705 -16.35952 -15.99570 -15.86249 -15.33384 -15.08853 -15.02555 -14.78377 -14.41169 -14.25122 -13.97485 -13.67604 -13.60850 -13.44240 -13.08286 -12.98963 -12.68638 -12.56507 -12.19153 -12.12348 -11.88500 -11.84440 -11.67200 -11.37422 -11.20982 -11.17517 -10.93441 -10.79846 -10.69731 -10.53259 -10.34041 -10.06182 -9.94918 -9.72163 -9.55817 -9.17748 -9.17264 -8.91220 -8.66883 -6.89719 -6.01016 -3.46411 1.04358 1.14450 2.47600 2.98146 3.34483 3.46000 3.50103 3.53674 4.13793 4.26905 4.32026 4.37262 4.49107 4.51373 4.55922 4.64927 4.75667 4.80433 4.89133 4.98285 5.09042 5.11765 5.16126 5.28524 5.33329 5.37259 5.42357 5.49673 5.62470 5.67991 5.69589 5.75503 5.78144 5.81756 5.84640 5.85615 6.07052 6.09867 6.16757 6.22663 6.26785 6.27519 6.32033 6.37925 6.40506 6.62612 6.72155 6.73222 7.34393 7.76169 7.82859 8.08104 8.28651 8.78591 9.62290 10.16690 11.14786 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003132 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.077732 B = 8937.351460 C = 9349.415861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.890 3.110 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.115 3.885 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.544 6.544 14 C 0.105 3.895 15 N -0.721 5.721 16 C 0.546 3.454 17 O -0.535 6.535 18 C -0.070 4.070 19 C -0.068 4.068 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.127 4.127 26 C -0.141 4.141 27 C -0.110 4.110 28 C 0.113 3.887 29 H 0.265 0.735 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.369 0.631 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.040 0.960 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.313 -12.454 8.198 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.167 4.167 3 Si 0.720 3.280 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.102 0.898 9 N -0.331 5.331 10 C -0.010 4.010 11 C -0.153 4.153 12 C 0.062 3.938 13 O -0.349 6.349 14 C -0.019 4.019 15 N -0.372 5.372 16 C 0.331 3.669 17 O -0.412 6.412 18 C -0.073 4.073 19 C -0.068 4.068 20 C -0.131 4.131 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.164 4.164 26 C -0.178 4.178 27 C -0.148 4.148 28 C -0.013 4.013 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.216 0.784 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.235 0.765 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.057 0.943 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.348 -12.230 6.945 23.920 hybrid contribution 0.281 0.906 0.983 1.366 sum 19.629 -11.324 7.929 24.008 Atomic orbital electron populations 1.69773 1.05735 1.26837 1.52782 1.25389 0.95232 0.97892 0.98226 0.86778 0.79300 0.83774 0.78108 1.21103 1.22949 1.19435 1.18547 0.80399 0.94088 1.44693 0.89755 1.44568 1.04045 1.39554 1.44921 1.21993 0.91783 0.93746 0.93461 1.22734 0.98704 0.99959 0.93900 1.22518 0.90289 0.87872 0.93104 1.86590 1.74790 1.42988 1.30551 1.22061 1.01148 0.92134 0.86569 1.45895 1.56816 1.22246 1.12287 1.19691 0.77659 0.80803 0.88710 1.90689 1.45367 1.71046 1.34067 1.20938 0.98930 0.95231 0.92242 1.19377 0.93823 0.99234 0.94386 1.21136 1.00228 0.98659 0.93105 1.21171 0.94634 0.98719 0.98932 1.21196 0.94812 0.99967 0.97878 1.21141 0.99988 0.98712 0.93711 1.21026 0.93970 0.98552 0.99035 1.23101 0.94899 0.97347 1.01066 1.22870 0.96132 0.98273 1.00555 1.22847 0.97531 0.91523 1.02904 1.22046 0.88004 0.95162 0.96087 0.92539 0.92396 0.95144 0.90431 0.89634 0.78440 0.90568 0.90161 0.76460 0.85415 0.85820 0.86110 0.86054 0.86114 0.88551 0.90310 0.89777 0.90754 0.89719 0.89325 0.94254 0.94894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.85 13.97 55.49 0.78 -27.07 16 2 C 0.03 0.95 5.47 -17.43 -0.10 0.86 16 3 Si 0.89 22.90 24.52 -169.99 -4.17 18.73 16 4 H -0.28 -7.09 7.10 56.52 0.40 -6.69 16 5 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 7 C -0.25 -7.03 10.55 -15.06 -0.16 -7.19 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.60 -14.42 3.00 -170.08 -0.51 -14.93 16 10 C 0.11 2.50 4.90 -2.53 -0.01 2.49 16 11 C -0.11 -1.92 6.26 -24.58 -0.15 -2.08 16 12 C 0.10 1.63 0.93 -88.78 -0.08 1.55 16 13 O -0.54 -8.60 13.10 -35.23 -0.46 -9.06 16 14 C 0.10 1.42 4.80 -4.04 -0.02 1.40 16 15 N -0.72 -8.66 5.12 -60.30 -0.31 -8.97 16 16 C 0.55 6.92 6.30 -10.98 -0.07 6.85 16 17 O -0.54 -8.48 15.93 5.56 0.09 -8.39 16 18 C -0.07 -0.70 0.93 -156.00 -0.14 -0.84 16 19 C -0.07 -0.64 4.87 -104.63 -0.51 -1.15 16 20 C -0.11 -0.97 9.06 -39.58 -0.36 -1.33 16 21 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.11 -1.04 9.46 -39.58 -0.37 -1.41 16 25 C -0.13 -1.10 6.34 -25.83 -0.16 -1.26 16 26 C -0.14 -1.26 7.81 -25.83 -0.20 -1.46 16 27 C -0.11 -1.03 6.98 -25.92 -0.18 -1.21 16 28 C 0.11 2.13 5.76 -3.07 -0.02 2.11 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 31 H 0.03 0.72 5.14 -51.93 -0.27 0.45 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.31 7.96 -51.93 -0.41 0.89 16 34 H 0.37 4.52 8.44 45.56 0.38 4.91 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 37 H 0.40 4.32 7.48 -40.82 -0.31 4.01 16 38 H 0.13 0.93 6.38 -52.49 -0.33 0.60 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.10 0.69 6.75 -51.93 -0.35 0.34 16 44 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.91 7.34 -51.93 -0.38 0.53 16 48 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 49 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 50 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 LS Contribution 395.67 15.07 5.96 5.96 Total: -1.00 -33.92 395.67 -9.48 -43.41 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.12 Total: 7.12 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.74 Total: -6.79 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.04 Total: -50.97 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.37 Total: -17.46 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.17 Total: 18.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.92 -9.48 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271167463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.828 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds