Wall clock time and date at job start Wed Apr 1 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47004 * 265.96807 * 3 2 1 5 5 H 1.48506 * 109.47441 * 25.96705 * 3 2 1 6 6 H 1.48499 * 109.47299 * 145.96708 * 3 2 1 7 7 C 1.38812 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99911 * 345.98428 * 7 2 1 9 9 N 1.36934 * 119.99974 * 165.98873 * 7 2 1 10 10 C 1.47435 * 125.64676 * 325.99424 * 9 7 2 11 11 C 1.54901 * 104.83284 * 204.16761 * 10 9 7 12 12 C 1.55162 * 101.58064 * 322.99085 * 11 10 9 13 13 O 1.42898 * 110.87316 * 277.06800 * 12 11 10 14 14 C 1.53009 * 110.71671 * 153.86498 * 12 11 10 15 15 N 1.46493 * 109.46736 * 190.02138 * 14 12 11 16 16 C 1.34780 * 120.00137 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99654 * 4.61402 * 16 15 14 18 18 C 1.50702 * 120.00251 * 184.61914 * 16 15 14 19 19 C 1.50691 * 112.84805 * 296.31312 * 18 16 15 20 20 C 1.38233 * 120.00200 * 114.83134 * 19 18 16 21 21 C 1.38235 * 120.00402 * 180.02562 * 20 19 18 22 22 C 1.38235 * 119.99809 * 0.02562 * 21 20 19 23 23 C 1.38242 * 120.00047 * 359.97383 * 22 21 20 24 24 C 1.38230 * 119.99718 * 0.04515 * 23 22 21 25 25 C 1.53781 * 113.61371 * 67.51069 * 18 16 15 26 26 C 1.53957 * 87.02262 * 89.23098 * 25 18 16 27 27 C 1.53783 * 113.61008 * 165.11657 * 18 16 15 28 28 C 1.47020 * 125.65095 * 146.04260 * 9 7 2 29 29 H 0.97003 * 119.99971 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.36746 * 323.00923 * 10 9 7 31 31 H 1.09000 * 110.36047 * 85.32822 * 10 9 7 32 32 H 1.08998 * 111.00778 * 204.91828 * 11 10 9 33 33 H 1.08991 * 111.00827 * 81.06679 * 11 10 9 34 34 H 0.96699 * 114.00028 * 177.45773 * 13 12 11 35 35 H 1.09001 * 109.46725 * 70.02713 * 14 12 11 36 36 H 1.08990 * 109.47172 * 310.02414 * 14 12 11 37 37 H 0.97001 * 120.00776 * 0.02562 * 15 14 12 38 38 H 1.08002 * 119.99781 * 359.97438 * 20 19 18 39 39 H 1.08001 * 120.00337 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00293 * 179.70075 * 22 21 20 41 41 H 1.07998 * 120.00101 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99671 * 179.97438 * 24 23 22 43 43 H 1.08998 * 113.61057 * 203.74624 * 25 18 16 44 44 H 1.08995 * 113.61674 * 334.65021 * 25 18 16 45 45 H 1.09004 * 113.53073 * 270.81162 * 26 25 18 46 46 H 1.08996 * 113.74815 * 139.94098 * 26 25 18 47 47 H 1.08994 * 113.61779 * 25.34825 * 27 18 16 48 48 H 1.09007 * 113.61056 * 156.16943 * 27 18 16 49 49 H 1.08991 * 109.88211 * 59.48205 * 28 9 7 50 50 H 1.08999 * 109.87687 * 298.31716 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5829 1.9972 -1.3966 5 1 1.4076 2.6759 0.6130 6 1 3.5025 1.4664 0.7836 7 6 2.0103 -1.2021 0.0005 8 1 1.4944 -2.1234 0.2275 9 7 3.3491 -1.2199 -0.2866 10 6 4.0358 -0.3267 -1.2375 11 6 5.3057 -1.1039 -1.6652 12 6 5.7043 -1.8034 -0.3389 13 8 6.4547 -0.9202 0.4970 14 6 6.4947 -3.0834 -0.6183 15 7 6.6498 -3.8426 0.6249 16 6 7.3175 -5.0134 0.6207 17 8 7.8614 -5.3976 -0.3929 18 6 7.3881 -5.8451 1.8755 19 6 8.1222 -5.1537 2.9952 20 6 7.4474 -4.7977 4.1479 21 6 8.1205 -4.1630 5.1750 22 6 9.4685 -3.8837 5.0490 23 6 10.1434 -4.2396 3.8963 24 6 9.4701 -4.8740 2.8692 25 6 6.0334 -6.4365 2.2996 26 6 6.3767 -7.6491 1.4153 27 6 7.8562 -7.2895 1.6314 28 6 4.3395 -2.1335 0.3016 29 1 -0.4850 0.8401 -0.0004 30 1 3.4008 -0.1325 -2.1018 31 1 4.3099 0.6085 -0.7492 32 1 6.0880 -0.4215 -1.9974 33 1 5.0737 -1.8360 -2.4387 34 1 6.6940 -1.2984 1.3542 35 1 7.4780 -2.8246 -1.0111 36 1 5.9592 -3.6888 -1.3494 37 1 6.2721 -3.5028 1.4512 38 1 6.3939 -5.0148 4.2458 39 1 7.5932 -3.8845 6.0754 40 1 9.9934 -3.3834 5.8494 41 1 11.1965 -4.0211 3.7977 42 1 9.9973 -5.1518 1.9684 43 1 5.9739 -6.6737 3.3618 44 1 5.1766 -5.8642 1.9440 45 1 6.0476 -7.5410 0.3817 46 1 6.0915 -8.6059 1.8525 47 1 8.4687 -7.4049 0.7373 48 1 8.2972 -7.7599 2.5103 49 1 4.0673 -3.1659 0.0829 50 1 4.3896 -1.9815 1.3798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271167463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:28 Heat of formation + Delta-G solvation = -34.025695 kcal Electronic energy + Delta-G solvation = -31187.345442 eV Core-core repulsion = 27179.760587 eV Total energy + Delta-G solvation = -4007.584855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.14546 -40.60851 -39.60776 -38.18846 -36.91885 -35.42635 -34.28847 -32.27857 -31.82547 -31.72538 -30.11091 -28.12390 -26.92489 -26.65252 -25.00055 -23.38403 -22.96950 -22.66472 -22.18471 -21.39424 -20.33776 -18.97162 -18.52584 -18.01021 -17.49090 -17.27411 -16.96533 -16.68564 -16.01860 -15.96503 -15.79316 -15.75107 -15.40639 -15.31679 -14.99632 -14.62740 -14.29981 -14.27647 -14.09041 -13.87671 -13.73305 -13.45787 -13.36134 -13.24476 -12.93999 -12.90976 -12.75200 -12.49089 -12.25864 -12.09058 -12.01470 -11.95354 -11.86287 -11.55441 -11.40246 -11.26249 -11.08126 -10.92529 -10.82656 -10.23181 -9.81152 -9.60076 -8.88355 -8.24144 -5.65607 0.39363 0.50890 1.29519 1.36804 1.48450 1.49358 2.00260 2.37609 2.84712 2.97708 3.12342 3.16010 3.40531 3.54443 3.58486 3.64769 3.70878 3.71521 3.77634 3.85446 4.15002 4.17228 4.31933 4.33733 4.34457 4.40807 4.59516 4.65533 4.69486 4.71616 4.75833 4.77526 4.81099 4.84172 4.92591 4.99418 5.01655 5.05569 5.06414 5.12941 5.13883 5.17109 5.28201 5.39240 5.60002 5.65384 5.66153 5.76781 6.09090 6.10667 6.36810 6.66716 6.73625 7.09147 7.46603 8.09737 8.95848 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003132 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.077732 B = 8937.351460 C = 9349.415861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.021 4.021 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.305 1.305 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.053 0.947 9 N -0.622 5.622 10 C 0.107 3.893 11 C -0.107 4.107 12 C 0.122 3.878 13 O -0.554 6.554 14 C 0.117 3.883 15 N -0.715 5.715 16 C 0.545 3.455 17 O -0.570 6.570 18 C -0.068 4.068 19 C -0.074 4.074 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.141 4.141 27 C -0.108 4.108 28 C 0.110 3.890 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.385 0.615 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.044 0.956 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.415 -12.436 9.485 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.217 4.217 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.370 4.370 8 H 0.071 0.929 9 N -0.350 5.350 10 C -0.018 4.018 11 C -0.146 4.146 12 C 0.080 3.920 13 O -0.361 6.361 14 C -0.007 4.007 15 N -0.366 5.366 16 C 0.332 3.668 17 O -0.449 6.449 18 C -0.071 4.071 19 C -0.075 4.075 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.157 4.157 26 C -0.179 4.179 27 C -0.146 4.146 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.234 0.766 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.084 0.916 48 H 0.123 0.877 49 H 0.062 0.938 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.487 -12.222 8.253 26.061 hybrid contribution -0.334 0.812 0.611 1.070 sum 21.153 -11.410 8.864 25.617 Atomic orbital electron populations 1.69892 1.07245 1.27526 1.55245 1.25980 0.95805 1.00972 0.98952 0.85800 0.77791 0.79909 0.78502 1.19935 1.23271 1.19286 1.18466 0.82545 0.92927 1.43077 0.92904 1.44673 1.03510 1.40507 1.46278 1.22049 0.93565 0.93734 0.92435 1.22734 0.96738 1.00280 0.94818 1.22239 0.88869 0.88602 0.92255 1.86562 1.74429 1.43437 1.31666 1.21828 1.00767 0.91014 0.87093 1.45821 1.56600 1.22071 1.12138 1.20167 0.76724 0.80732 0.89183 1.90672 1.46839 1.71822 1.35613 1.20867 1.00009 0.95009 0.91196 1.19331 0.93743 0.99861 0.94544 1.21304 1.00856 0.98486 0.92821 1.21461 0.94846 0.98171 0.99411 1.21487 0.95030 0.99550 0.98097 1.21354 1.00793 0.98412 0.93639 1.21070 0.94330 0.99498 0.99225 1.23136 0.93719 0.96665 1.02174 1.22850 0.95824 0.99466 0.99729 1.22855 0.97527 0.91442 1.02740 1.22202 0.88653 0.94180 0.96432 0.92597 0.93754 0.96239 0.88203 0.87983 0.76579 0.90152 0.90534 0.75556 0.84202 0.84040 0.84194 0.84742 0.87155 0.86416 0.91003 0.91699 0.88929 0.91603 0.87711 0.93822 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.80 13.97 21.65 0.30 -59.49 16 2 C -0.02 -1.23 5.47 84.86 0.46 -0.77 16 3 Si 0.95 47.64 24.52 68.60 1.68 49.32 16 4 H -0.27 -13.04 7.10 99.48 0.71 -12.34 16 5 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 6 H -0.27 -13.18 6.64 99.48 0.66 -12.52 16 7 C -0.24 -13.78 10.55 84.03 0.89 -12.90 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 9 N -0.62 -29.34 3.00 -692.02 -2.08 -31.42 16 10 C 0.11 4.49 4.90 86.85 0.43 4.91 16 11 C -0.11 -3.34 6.26 31.98 0.20 -3.14 16 12 C 0.12 3.55 0.93 -9.60 -0.01 3.54 16 13 O -0.55 -15.84 13.10 -148.98 -1.95 -17.79 16 14 C 0.12 2.94 4.80 86.38 0.42 3.35 16 15 N -0.71 -16.01 5.12 -463.06 -2.37 -18.38 16 16 C 0.54 13.33 6.30 87.66 0.55 13.88 16 17 O -0.57 -17.97 15.93 -3.04 -0.05 -18.02 16 18 C -0.07 -1.26 0.93 -53.15 -0.05 -1.31 16 19 C -0.07 -1.28 4.87 -19.87 -0.10 -1.37 16 20 C -0.12 -1.70 9.06 22.27 0.20 -1.50 16 21 C -0.12 -1.62 10.05 22.27 0.22 -1.39 16 22 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.12 -2.23 9.46 22.27 0.21 -2.01 16 25 C -0.12 -1.86 6.34 31.18 0.20 -1.66 16 26 C -0.14 -2.37 7.81 31.18 0.24 -2.13 16 27 C -0.11 -1.92 6.98 31.12 0.22 -1.70 16 28 C 0.11 3.99 5.76 86.73 0.50 4.49 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.04 1.96 7.86 -2.39 -0.02 1.94 16 31 H 0.02 0.89 5.14 -2.39 -0.01 0.87 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.10 2.85 7.96 -2.39 -0.02 2.83 16 34 H 0.39 8.24 8.44 -74.06 -0.62 7.62 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.41 7.95 7.48 -92.71 -0.69 7.26 16 38 H 0.14 1.63 6.38 -2.91 -0.02 1.61 16 39 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.11 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.12 1.34 6.75 -2.39 -0.02 1.33 16 44 H 0.07 1.23 8.09 -2.39 -0.02 1.22 16 45 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.43 7.34 -2.39 -0.02 1.41 16 48 H 0.10 1.51 8.09 -2.38 -0.02 1.49 16 49 H 0.04 1.56 7.82 -2.39 -0.02 1.54 16 50 H 0.04 1.35 8.07 -2.39 -0.02 1.33 16 Total: -1.00 -73.99 395.67 0.16 -73.83 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.41 Total: 24.76 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.03 Total: -2.80 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.15 Total: -109.30 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.00 Total: -35.81 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.68 Total: 49.32 kcal Total: -73.99 0.16 -73.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271167463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.806 kcal (2) G-P(sol) polarization free energy of solvation -73.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds