Wall clock time and date at job start Wed Apr 1 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47130 * 90.00103 * 3 2 1 5 5 H 1.48504 * 109.47164 * 209.99996 * 3 2 1 6 6 H 1.48501 * 109.47478 * 330.00000 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 169.28971 * 7 2 1 9 9 N 1.36939 * 119.99928 * 349.29497 * 7 2 1 10 10 C 1.47158 * 120.97874 * 328.89649 * 9 7 2 11 11 C 1.53292 * 108.38079 * 230.51178 * 10 9 7 12 12 O 1.42963 * 109.22772 * 307.69716 * 11 10 9 13 13 C 1.42961 * 114.16299 * 62.58238 * 12 11 10 14 14 C 1.47147 * 120.98318 * 148.61237 * 9 7 2 15 15 H 1.08998 * 109.68560 * 249.21100 * 14 9 7 16 16 C 1.53004 * 109.68199 * 9.76777 * 14 9 7 17 17 N 1.46500 * 109.46866 * 299.31398 * 16 14 9 18 18 C 1.34780 * 119.99587 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99503 * 180.02562 * 18 17 16 21 21 C 1.50695 * 109.46696 * 180.02562 * 20 18 17 22 22 C 1.30996 * 120.00303 * 124.99968 * 21 20 18 23 23 C 1.50699 * 120.00560 * 179.97438 * 22 21 20 24 24 C 1.50698 * 109.46908 * 124.99957 * 23 22 21 25 25 C 1.38236 * 120.00358 * 269.73263 * 24 23 22 26 26 C 1.38238 * 119.99881 * 179.81523 * 25 24 23 27 27 C 1.38225 * 120.00382 * 0.38888 * 26 25 24 28 28 C 1.38236 * 119.99865 * 359.86372 * 27 26 25 29 29 C 1.38237 * 120.00252 * 359.95107 * 28 27 26 30 30 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.68021 * 350.23502 * 10 9 7 32 32 H 1.09002 * 109.67613 * 110.75399 * 10 9 7 33 33 H 1.08999 * 109.51695 * 67.62522 * 11 10 9 34 34 H 1.09005 * 109.50964 * 187.72373 * 11 10 9 35 35 H 1.08995 * 109.51475 * 57.34527 * 13 12 11 36 36 H 1.09001 * 109.51404 * 177.45180 * 13 12 11 37 37 H 1.09002 * 109.47110 * 59.31513 * 16 14 9 38 38 H 1.08998 * 109.46774 * 179.31698 * 16 14 9 39 39 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 40 40 H 1.08996 * 109.46608 * 300.00236 * 20 18 17 41 41 H 1.08997 * 109.47038 * 60.00173 * 20 18 17 42 42 H 1.08007 * 120.00210 * 304.99779 * 21 20 18 43 43 H 1.08002 * 119.99913 * 0.02562 * 22 21 20 44 44 H 1.08997 * 109.47831 * 245.00177 * 23 22 21 45 45 H 1.09008 * 109.46781 * 5.00688 * 23 22 21 46 46 H 1.08003 * 119.99797 * 359.97438 * 25 24 23 47 47 H 1.08001 * 119.99427 * 180.23373 * 26 25 24 48 48 H 1.07995 * 120.00754 * 179.83542 * 27 26 25 49 49 H 1.07999 * 120.00298 * 179.97438 * 28 27 26 50 50 H 1.07994 * 120.00468 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0761 -1.2102 -0.1743 9 7 1.3434 -2.3778 0.2192 10 6 0.1520 -2.4231 1.0818 11 6 0.3374 -3.5509 2.1034 12 8 0.6695 -4.7593 1.4155 13 6 1.9020 -4.7019 0.6933 14 6 1.7934 -3.6320 -0.4051 15 1 1.0712 -3.9470 -1.1582 16 6 3.1609 -3.4209 -1.0580 17 7 3.0538 -2.3899 -2.0933 18 6 4.1414 -2.0349 -2.8058 19 8 5.2085 -2.5693 -2.5903 20 6 4.0313 -0.9739 -3.8704 21 6 5.3781 -0.7661 -4.5136 22 6 5.5074 -0.8746 -5.8126 23 6 6.8542 -0.6662 -6.4559 24 6 7.2072 -1.8743 -7.2848 25 6 7.9050 -2.9231 -6.7157 26 6 8.2254 -4.0329 -7.4751 27 6 7.8552 -4.0903 -8.8056 28 6 7.1619 -3.0392 -9.3761 29 6 6.8381 -1.9311 -8.6158 30 1 -0.4850 0.8401 -0.0004 31 1 0.0388 -1.4718 1.6017 32 1 -0.7327 -2.6178 0.4757 33 1 1.1420 -3.2906 2.7911 34 1 -0.5878 -3.6916 2.6622 35 1 2.7123 -4.4458 1.3758 36 1 2.1025 -5.6716 0.2377 37 1 3.8794 -3.1036 -0.3022 38 1 3.4963 -4.3549 -1.5088 39 1 2.2004 -1.9622 -2.2654 40 1 3.3130 -1.2910 -4.6264 41 1 3.6956 -0.0401 -3.4194 42 1 6.2369 -0.5276 -3.9035 43 1 4.6487 -1.1126 -6.4228 44 1 6.8189 0.2156 -7.0956 45 1 7.6084 -0.5237 -5.6819 46 1 8.1976 -2.8767 -5.6771 47 1 8.7673 -4.8540 -7.0295 48 1 8.1078 -4.9561 -9.3997 49 1 6.8729 -3.0838 -10.4158 50 1 6.2969 -1.1097 -9.0616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272870016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:54 Heat of formation + Delta-G solvation = -21.358496 kcal Electronic energy + Delta-G solvation = -29646.702300 eV Core-core repulsion = 25639.666736 eV Total energy + Delta-G solvation = -4007.035564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.47945 -39.27347 -38.31988 -35.73791 -35.17722 -33.55800 -32.44185 -31.52166 -31.00690 -30.46520 -28.89437 -27.22434 -25.92916 -24.47919 -23.47526 -22.69866 -21.80258 -21.30678 -19.95196 -19.67786 -19.31077 -17.10611 -16.89533 -16.12490 -15.94468 -15.80019 -15.35622 -15.31476 -14.97217 -14.82075 -14.55609 -14.20630 -13.88713 -13.86366 -13.57515 -13.52917 -13.21631 -13.17310 -12.86006 -12.70866 -12.57979 -12.02529 -11.94217 -11.61470 -11.49982 -11.26120 -11.11834 -11.05967 -11.02256 -10.92837 -10.75864 -10.43680 -10.27143 -10.07843 -9.69058 -9.49858 -9.06354 -9.03913 -8.91991 -8.73797 -8.69959 -8.25557 -6.76217 -5.93883 -3.44096 1.21531 1.27821 2.29261 3.20495 3.25235 3.33735 3.34831 3.66573 3.89661 4.31097 4.51987 4.67607 4.74107 4.85754 4.93242 4.99950 5.10678 5.14443 5.23225 5.29326 5.36952 5.39796 5.53983 5.59076 5.60659 5.69432 5.72765 5.77569 5.84049 5.89200 5.94800 5.96693 6.01429 6.09905 6.14152 6.22573 6.31327 6.32763 6.38594 6.50240 6.51092 6.72147 6.74809 6.84860 6.91773 7.05005 7.12853 7.46415 7.67193 7.84867 8.22572 8.27131 8.85350 9.02396 9.62625 10.22146 11.12376 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002447 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.075709 B =11441.766320 C =12979.159100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.137 3.863 17 N -0.696 5.696 18 C 0.512 3.488 19 O -0.562 6.562 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.166 4.166 23 C -0.049 4.049 24 C -0.073 4.073 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.129 4.129 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.255 0.745 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -4.089 -12.613 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.348 5.348 18 C 0.298 3.702 19 O -0.443 6.443 20 C -0.155 4.155 21 C -0.133 4.133 22 C -0.184 4.184 23 C -0.086 4.086 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.147 4.147 28 C -0.140 4.140 29 C -0.137 4.137 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.253 0.747 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.036 -4.478 -12.449 16.606 hybrid contribution -0.019 1.381 0.044 1.382 sum 10.017 -3.097 -12.405 16.242 Atomic orbital electron populations 1.69980 1.05187 1.25680 1.53547 1.25161 0.95317 0.98227 1.00415 0.86385 0.79187 0.83752 0.78083 1.21334 1.20180 1.21546 1.19256 0.91359 0.83268 1.44529 0.90819 1.44109 1.31920 1.03067 1.52606 1.21419 0.88850 0.96817 0.91096 1.23348 0.99118 0.86550 0.95276 1.87799 1.40203 1.36116 1.67015 1.22944 0.86616 0.98695 0.94058 1.21517 0.93768 0.89285 0.93655 0.94113 1.21127 0.97403 0.90121 0.90122 1.46028 1.12631 1.40226 1.35867 1.20366 0.84079 0.83383 0.82375 1.90629 1.28211 1.56047 1.69365 1.20759 0.97119 0.99700 0.97960 1.22464 0.97294 0.98482 0.95031 1.22570 0.97199 1.03102 0.95494 1.19662 0.95444 0.95035 0.98451 1.19851 0.97311 0.96144 0.93985 1.21139 0.98371 0.93430 0.99957 1.21163 1.00132 0.98076 0.94300 1.21124 0.99406 0.98720 0.95409 1.21117 0.99042 0.94074 0.99749 1.21056 1.00421 0.98512 0.93739 0.93432 0.88948 0.95276 0.94136 0.90252 0.93491 0.89968 0.91631 0.92480 0.74713 0.88893 0.87765 0.86811 0.87373 0.90319 0.90520 0.85886 0.86159 0.86358 0.86283 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.79 11.13 55.49 0.62 -23.17 16 2 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 3 Si 0.90 20.22 29.57 -169.99 -5.03 15.19 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.17 7.06 -15.06 -0.11 -6.27 16 8 H 0.07 1.82 5.82 -52.49 -0.31 1.52 16 9 N -0.59 -13.40 3.03 -164.05 -0.50 -13.90 16 10 C 0.14 3.23 5.37 -3.53 -0.02 3.21 16 11 C 0.03 0.67 6.98 37.31 0.26 0.93 16 12 O -0.39 -7.61 10.74 -35.23 -0.38 -7.99 16 13 C 0.06 0.99 6.31 37.53 0.24 1.22 16 14 C 0.12 2.42 3.23 -67.20 -0.22 2.20 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.52 4.46 -4.04 -0.02 2.50 16 17 N -0.70 -12.85 3.78 -60.29 -0.23 -13.08 16 18 C 0.51 9.30 7.82 -10.98 -0.09 9.22 16 19 O -0.56 -11.76 16.03 5.56 0.09 -11.67 16 20 C -0.12 -1.70 6.14 -29.03 -0.18 -1.87 16 21 C -0.11 -1.57 8.36 -36.03 -0.30 -1.87 16 22 C -0.17 -1.97 9.10 -36.03 -0.33 -2.30 16 23 C -0.05 -0.51 5.79 -29.04 -0.17 -0.67 16 24 C -0.07 -0.80 5.12 -104.62 -0.54 -1.34 16 25 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 26 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 27 C -0.13 -1.22 10.05 -39.59 -0.40 -1.61 16 28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 29 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.09 2.28 6.32 -51.93 -0.33 1.96 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.32 7.56 -51.93 -0.39 0.92 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.42 7.94 7.32 -40.82 -0.30 7.64 16 40 H 0.09 1.17 7.79 -51.93 -0.40 0.77 16 41 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.11 1.63 7.84 -52.48 -0.41 1.22 16 43 H 0.11 1.22 7.84 -52.49 -0.41 0.81 16 44 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.08 0.78 7.74 -51.92 -0.40 0.38 16 46 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -29.21 405.99 -10.82 -40.03 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.01 Total: 11.37 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.51 Total: -2.91 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.11 Total: -50.14 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.29 Total: -19.66 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.21 -10.82 -40.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.674 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds