Wall clock time and date at job start Wed Apr 1 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47130 * 90.00103 * 3 2 1 5 5 H 1.48504 * 109.47164 * 209.99996 * 3 2 1 6 6 H 1.48501 * 109.47478 * 330.00000 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 169.28971 * 7 2 1 9 9 N 1.36939 * 119.99928 * 349.29497 * 7 2 1 10 10 C 1.47158 * 120.97874 * 328.89649 * 9 7 2 11 11 C 1.53292 * 108.38079 * 230.51178 * 10 9 7 12 12 O 1.42963 * 109.22772 * 307.69716 * 11 10 9 13 13 C 1.42961 * 114.16299 * 62.58238 * 12 11 10 14 14 C 1.47147 * 120.98318 * 148.61237 * 9 7 2 15 15 H 1.08998 * 109.68560 * 249.21100 * 14 9 7 16 16 C 1.53004 * 109.68199 * 9.76777 * 14 9 7 17 17 N 1.46500 * 109.46866 * 299.31398 * 16 14 9 18 18 C 1.34780 * 119.99587 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99503 * 180.02562 * 18 17 16 21 21 C 1.50695 * 109.46696 * 180.02562 * 20 18 17 22 22 C 1.30996 * 120.00303 * 124.99968 * 21 20 18 23 23 C 1.50699 * 120.00560 * 179.97438 * 22 21 20 24 24 C 1.50698 * 109.46908 * 124.99957 * 23 22 21 25 25 C 1.38236 * 120.00358 * 269.73263 * 24 23 22 26 26 C 1.38238 * 119.99881 * 179.81523 * 25 24 23 27 27 C 1.38225 * 120.00382 * 0.38888 * 26 25 24 28 28 C 1.38236 * 119.99865 * 359.86372 * 27 26 25 29 29 C 1.38237 * 120.00252 * 359.95107 * 28 27 26 30 30 H 0.97007 * 119.99835 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.68021 * 350.23502 * 10 9 7 32 32 H 1.09002 * 109.67613 * 110.75399 * 10 9 7 33 33 H 1.08999 * 109.51695 * 67.62522 * 11 10 9 34 34 H 1.09005 * 109.50964 * 187.72373 * 11 10 9 35 35 H 1.08995 * 109.51475 * 57.34527 * 13 12 11 36 36 H 1.09001 * 109.51404 * 177.45180 * 13 12 11 37 37 H 1.09002 * 109.47110 * 59.31513 * 16 14 9 38 38 H 1.08998 * 109.46774 * 179.31698 * 16 14 9 39 39 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 40 40 H 1.08996 * 109.46608 * 300.00236 * 20 18 17 41 41 H 1.08997 * 109.47038 * 60.00173 * 20 18 17 42 42 H 1.08007 * 120.00210 * 304.99779 * 21 20 18 43 43 H 1.08002 * 119.99913 * 0.02562 * 22 21 20 44 44 H 1.08997 * 109.47831 * 245.00177 * 23 22 21 45 45 H 1.09008 * 109.46781 * 5.00688 * 23 22 21 46 46 H 1.08003 * 119.99797 * 359.97438 * 25 24 23 47 47 H 1.08001 * 119.99427 * 180.23373 * 26 25 24 48 48 H 1.07995 * 120.00754 * 179.83542 * 27 26 25 49 49 H 1.07999 * 120.00298 * 179.97438 * 28 27 26 50 50 H 1.07994 * 120.00468 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0761 -1.2102 -0.1743 9 7 1.3434 -2.3778 0.2192 10 6 0.1520 -2.4231 1.0818 11 6 0.3374 -3.5509 2.1034 12 8 0.6695 -4.7593 1.4155 13 6 1.9020 -4.7019 0.6933 14 6 1.7934 -3.6320 -0.4051 15 1 1.0712 -3.9470 -1.1582 16 6 3.1609 -3.4209 -1.0580 17 7 3.0538 -2.3899 -2.0933 18 6 4.1414 -2.0349 -2.8058 19 8 5.2085 -2.5693 -2.5903 20 6 4.0313 -0.9739 -3.8704 21 6 5.3781 -0.7661 -4.5136 22 6 5.5074 -0.8746 -5.8126 23 6 6.8542 -0.6662 -6.4559 24 6 7.2072 -1.8743 -7.2848 25 6 7.9050 -2.9231 -6.7157 26 6 8.2254 -4.0329 -7.4751 27 6 7.8552 -4.0903 -8.8056 28 6 7.1619 -3.0392 -9.3761 29 6 6.8381 -1.9311 -8.6158 30 1 -0.4850 0.8401 -0.0004 31 1 0.0388 -1.4718 1.6017 32 1 -0.7327 -2.6178 0.4757 33 1 1.1420 -3.2906 2.7911 34 1 -0.5878 -3.6916 2.6622 35 1 2.7123 -4.4458 1.3758 36 1 2.1025 -5.6716 0.2377 37 1 3.8794 -3.1036 -0.3022 38 1 3.4963 -4.3549 -1.5088 39 1 2.2004 -1.9622 -2.2654 40 1 3.3130 -1.2910 -4.6264 41 1 3.6956 -0.0401 -3.4194 42 1 6.2369 -0.5276 -3.9035 43 1 4.6487 -1.1126 -6.4228 44 1 6.8189 0.2156 -7.0956 45 1 7.6084 -0.5237 -5.6819 46 1 8.1976 -2.8767 -5.6771 47 1 8.7673 -4.8540 -7.0295 48 1 8.1078 -4.9561 -9.3997 49 1 6.8729 -3.0838 -10.4158 50 1 6.2969 -1.1097 -9.0616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272870016.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:52 Heat of formation + Delta-G solvation = -36.269506 kcal Electronic energy + Delta-G solvation = -29647.348890 eV Core-core repulsion = 25639.666736 eV Total energy + Delta-G solvation = -4007.682154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.85596 -40.16562 -39.85470 -37.05353 -36.45459 -35.25493 -33.52993 -33.07451 -32.11703 -31.74290 -29.94417 -28.95341 -27.20330 -25.68743 -25.21482 -23.44180 -23.34525 -22.19469 -21.46207 -21.15143 -20.42215 -18.76361 -17.69878 -17.65210 -17.55919 -17.25403 -16.52993 -16.35390 -16.21951 -16.03257 -15.99567 -15.72744 -15.44330 -15.18232 -14.83715 -14.57979 -14.43371 -14.30440 -14.21412 -14.01851 -13.64924 -13.39224 -13.13286 -12.90418 -12.78956 -12.73967 -12.67343 -12.48298 -12.19749 -12.10602 -12.00644 -11.92954 -11.85488 -11.79120 -11.31209 -10.97665 -10.62365 -10.56366 -9.97432 -9.81049 -9.79531 -9.56739 -8.61625 -7.85789 -5.37549 0.44927 0.52085 1.27765 1.42538 1.48617 1.53693 1.76771 2.43273 2.52654 2.90531 3.03543 3.30200 3.44711 3.82133 3.92721 4.00579 4.03543 4.05067 4.18930 4.19611 4.25581 4.32314 4.34981 4.43445 4.47332 4.53581 4.61048 4.64277 4.66287 4.66801 4.67655 4.74232 4.80127 4.87824 4.95252 5.00599 5.11548 5.17650 5.19578 5.30501 5.58887 5.59285 5.64527 5.65138 5.68651 5.70882 5.75079 5.88900 6.15928 6.29415 6.38040 6.74587 7.11532 7.38375 7.77036 8.33673 9.18426 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002447 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.075709 B =11441.766320 C =12979.159100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.033 4.033 3 Si 0.946 3.054 4 H -0.295 1.295 5 H -0.271 1.271 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.143 3.857 17 N -0.698 5.698 18 C 0.508 3.492 19 O -0.592 6.592 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.049 4.049 24 C -0.087 4.087 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.134 4.134 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.250 0.750 31 H 0.066 0.934 32 H 0.007 0.993 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.412 0.588 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.132 0.868 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -4.918 -14.266 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.229 4.229 3 Si 0.776 3.224 4 H -0.222 1.222 5 H -0.196 1.196 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.349 5.349 18 C 0.296 3.704 19 O -0.474 6.474 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.085 4.085 24 C -0.087 4.087 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.144 4.144 29 C -0.143 4.143 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.249 0.751 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.137 0.863 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.132 0.868 47 H 0.150 0.850 48 H 0.158 0.842 49 H 0.161 0.839 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.582 -5.324 -14.105 18.419 hybrid contribution -0.137 1.555 0.488 1.636 sum 10.444 -3.769 -13.616 17.570 Atomic orbital electron populations 1.70102 1.06189 1.25656 1.55343 1.25638 0.95774 1.00365 1.01157 0.85597 0.78406 0.81110 0.77331 1.22223 1.19571 1.21823 1.19294 0.91104 0.83953 1.42835 0.91330 1.44309 1.31739 1.03815 1.53225 1.21245 0.88124 0.96942 0.91361 1.23217 1.00477 0.85285 0.94198 1.87802 1.40959 1.35764 1.67095 1.23064 0.86046 0.99661 0.93366 1.21629 0.93862 0.88342 0.94159 0.94497 1.21059 0.96313 0.90936 0.89851 1.46078 1.12630 1.40267 1.35906 1.20987 0.83288 0.83540 0.82596 1.90608 1.29181 1.57280 1.70349 1.20745 0.98344 0.98295 0.97369 1.22342 0.96578 1.01409 0.95675 1.22777 0.98244 1.00153 0.94871 1.19693 0.94400 0.95821 0.98623 1.19950 0.97912 0.96116 0.94728 1.21254 0.99563 0.94485 0.99930 1.21401 1.00411 0.98156 0.94958 1.21457 0.98885 0.99615 0.95199 1.21482 0.98329 0.93619 1.00935 1.21334 1.00304 0.99387 0.93317 0.94055 0.91567 0.97501 0.93907 0.87775 0.93324 0.86580 0.93428 0.90603 0.75090 0.86655 0.87831 0.88081 0.86259 0.88238 0.90955 0.86847 0.85047 0.84170 0.83863 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.89 11.13 21.65 0.24 -49.65 16 2 C -0.03 -1.66 5.06 84.86 0.43 -1.23 16 3 Si 0.95 41.98 29.57 68.60 2.03 44.01 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.24 -11.76 7.06 84.03 0.59 -11.16 16 8 H 0.07 3.40 5.82 -2.91 -0.02 3.39 16 9 N -0.60 -27.39 3.03 -672.94 -2.04 -29.43 16 10 C 0.15 6.73 5.37 86.35 0.46 7.19 16 11 C 0.05 1.70 6.98 72.08 0.50 2.21 16 12 O -0.40 -14.59 10.74 -148.98 -1.60 -16.19 16 13 C 0.06 1.90 6.31 72.23 0.46 2.35 16 14 C 0.13 4.77 3.23 45.11 0.15 4.92 16 15 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 16 C 0.14 5.16 4.46 86.38 0.38 5.55 16 17 N -0.70 -25.55 3.78 -463.04 -1.75 -27.30 16 18 C 0.51 18.35 7.82 87.66 0.69 19.03 16 19 O -0.59 -24.84 16.03 -3.02 -0.05 -24.89 16 20 C -0.11 -3.09 6.14 29.10 0.18 -2.91 16 21 C -0.14 -3.83 8.36 25.65 0.21 -3.61 16 22 C -0.14 -3.19 9.10 25.65 0.23 -2.96 16 23 C -0.05 -0.94 5.79 29.10 0.17 -0.77 16 24 C -0.09 -1.81 5.12 -19.86 -0.10 -1.91 16 25 C -0.13 -3.03 9.70 22.27 0.22 -2.81 16 26 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 27 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 28 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 29 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 30 H 0.25 13.26 8.31 -92.70 -0.77 12.49 16 31 H 0.07 3.34 6.32 -2.39 -0.02 3.33 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 38 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.41 15.69 7.32 -92.71 -0.68 15.01 16 40 H 0.12 2.73 7.79 -2.39 -0.02 2.71 16 41 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.10 2.96 7.84 -2.91 -0.02 2.94 16 43 H 0.12 2.41 7.84 -2.91 -0.02 2.39 16 44 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 45 H 0.07 1.46 7.74 -2.38 -0.02 1.44 16 46 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 47 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 48 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 49 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 50 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -62.78 405.99 2.54 -60.24 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.25 Total: 37.56 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.46 Total: 5.66 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -3.55 Total: -106.38 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.65 Total: -41.08 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -62.78 2.54 -60.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870016.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.974 kcal (2) G-P(sol) polarization free energy of solvation -62.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds