Wall clock time and date at job start Wed Apr 1 2020 03:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47373 * 300.00361 * 3 2 1 6 6 H 1.48497 * 109.47034 * 60.00634 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99883 * 190.72553 * 7 2 1 9 9 N 1.36935 * 120.00120 * 10.72463 * 7 2 1 10 10 C 1.47154 * 120.98076 * 31.17748 * 9 7 2 11 11 C 1.53306 * 108.38046 * 129.48656 * 10 9 7 12 12 O 1.42965 * 109.22056 * 52.30718 * 11 10 9 13 13 C 1.42968 * 114.16219 * 297.41390 * 12 11 10 14 14 C 1.47146 * 120.98322 * 211.20713 * 9 7 2 15 15 H 1.08997 * 109.68965 * 110.74769 * 14 9 7 16 16 C 1.53006 * 109.68042 * 350.23218 * 14 9 7 17 17 N 1.46501 * 109.46648 * 60.62617 * 16 14 9 18 18 C 1.34781 * 119.99628 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00169 * 359.73293 * 18 17 16 20 20 C 1.50700 * 119.99848 * 179.72239 * 18 17 16 21 21 C 1.50702 * 109.46775 * 180.02562 * 20 18 17 22 22 C 1.31003 * 119.99470 * 125.00372 * 21 20 18 23 23 C 1.50700 * 119.99752 * 179.97438 * 22 21 20 24 24 C 1.50703 * 109.47154 * 125.00050 * 23 22 21 25 25 C 1.38242 * 120.00000 * 269.72857 * 24 23 22 26 26 C 1.38233 * 119.99657 * 179.78540 * 25 24 23 27 27 C 1.38234 * 120.00302 * 0.44247 * 26 25 24 28 28 C 1.38239 * 119.99844 * 359.81300 * 27 26 25 29 29 C 1.38231 * 119.99812 * 89.99937 * 24 23 22 30 30 H 0.97001 * 120.00671 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.68509 * 249.20948 * 10 9 7 32 32 H 1.09000 * 109.68586 * 9.76781 * 10 9 7 33 33 H 1.08998 * 109.50803 * 172.22395 * 11 10 9 34 34 H 1.08996 * 109.51369 * 292.38328 * 11 10 9 35 35 H 1.08994 * 109.51710 * 302.66205 * 13 12 11 36 36 H 1.09004 * 109.50916 * 182.50486 * 13 12 11 37 37 H 1.08997 * 109.47036 * 300.62573 * 16 14 9 38 38 H 1.08994 * 109.46972 * 180.62551 * 16 14 9 39 39 H 0.96990 * 120.00459 * 359.72472 * 17 16 14 40 40 H 1.08998 * 109.47210 * 300.00335 * 20 18 17 41 41 H 1.08998 * 109.46647 * 60.00956 * 20 18 17 42 42 H 1.07995 * 120.00295 * 305.00111 * 21 20 18 43 43 H 1.07995 * 120.00235 * 359.97438 * 22 21 20 44 44 H 1.09002 * 109.47663 * 245.00176 * 23 22 21 45 45 H 1.09009 * 109.47294 * 5.00163 * 23 22 21 46 46 H 1.07998 * 119.99557 * 359.97438 * 25 24 23 47 47 H 1.08007 * 119.99562 * 180.27343 * 26 25 24 48 48 H 1.07993 * 120.00124 * 179.83237 * 27 26 25 49 49 H 1.07996 * 120.00124 * 180.02562 * 28 27 26 50 50 H 1.07994 * 120.00008 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0761 -1.2104 0.1735 9 7 1.3435 -2.3776 -0.2217 10 6 0.1534 -2.4223 -1.0860 11 6 0.3401 -3.5498 -2.1079 12 8 0.6709 -4.7586 -1.4198 13 6 1.9024 -4.7016 -0.6959 14 6 1.7957 -3.6332 0.3982 15 1 1.0758 -3.9502 1.1528 16 6 3.1647 -3.4230 1.0484 17 7 3.0597 -2.3937 2.0856 18 6 4.1486 -2.0405 2.7970 19 8 5.2143 -2.5782 2.5819 20 6 4.0421 -0.9773 3.8597 21 6 5.3902 -0.7712 4.5010 22 6 5.9224 0.4253 4.5369 23 6 7.2702 0.6315 5.1786 24 6 8.1987 1.2958 4.1949 25 6 8.9805 0.5258 3.3540 26 6 9.8288 1.1353 2.4486 27 6 9.9022 2.5144 2.3903 28 6 9.1244 3.2843 3.2348 29 6 8.2727 2.6749 4.1373 30 1 -0.4851 0.8400 0.0004 31 1 -0.7323 -2.6178 -0.4814 32 1 0.0410 -1.4708 -1.6057 33 1 -0.5847 -3.6908 -2.6673 34 1 1.1458 -3.2894 -2.7942 35 1 2.7137 -4.4453 -1.3771 36 1 2.1016 -5.6713 -0.2396 37 1 3.8813 -3.1044 0.2915 38 1 3.5012 -4.3577 1.4968 39 1 2.2075 -1.9639 2.2579 40 1 3.7089 -0.0434 3.4071 41 1 3.3234 -1.2910 4.6167 42 1 5.9175 -1.6099 4.9309 43 1 5.3953 1.2639 4.1065 44 1 7.1605 1.2646 6.0591 45 1 7.6835 -0.3331 5.4739 46 1 8.9261 -0.5517 3.4024 47 1 10.4364 0.5337 1.7885 48 1 10.5670 2.9905 1.6848 49 1 9.1814 4.3617 3.1891 50 1 7.6649 3.2763 4.7969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272870020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:01 Heat of formation + Delta-G solvation = -21.197998 kcal Electronic energy + Delta-G solvation = -29960.051402 eV Core-core repulsion = 25953.022798 eV Total energy + Delta-G solvation = -4007.028605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.44119 -39.24867 -38.32852 -35.71444 -35.16818 -33.55740 -32.40678 -31.52481 -30.93749 -30.47187 -28.86934 -27.22799 -25.91375 -24.45890 -23.47509 -22.63335 -21.79670 -21.26279 -19.94760 -19.65998 -19.29830 -17.09603 -16.84558 -16.11938 -15.97810 -15.75650 -15.32573 -15.25189 -15.01014 -14.77791 -14.55920 -14.13359 -13.93161 -13.80951 -13.57058 -13.46400 -13.25029 -13.14301 -12.87365 -12.64703 -12.52624 -12.02679 -11.88852 -11.65018 -11.46619 -11.23105 -11.07753 -11.04854 -10.98196 -10.92633 -10.74384 -10.42655 -10.26188 -10.07740 -9.68698 -9.49341 -9.06019 -8.97303 -8.88483 -8.70530 -8.68223 -8.25770 -6.75950 -5.93928 -3.43710 1.28308 1.35129 2.31110 3.20862 3.24064 3.34328 3.38159 3.73394 3.89168 4.31572 4.51836 4.73029 4.80240 4.91897 4.97422 5.05593 5.11971 5.16821 5.23669 5.32261 5.39432 5.45511 5.58996 5.60844 5.64479 5.67861 5.71045 5.79989 5.85572 5.91171 5.99389 6.01070 6.01650 6.10027 6.14167 6.22797 6.31308 6.39656 6.45628 6.50632 6.55874 6.73648 6.76810 6.88173 6.97625 7.05072 7.12859 7.46367 7.68151 7.84717 8.22668 8.27229 8.85398 9.02764 9.62965 10.22243 11.12478 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.002783 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.723536 B =10059.504107 C =10921.853936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.254 4.254 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.696 5.696 18 C 0.511 3.489 19 O -0.562 6.562 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.162 4.162 23 C -0.048 4.048 24 C -0.075 4.075 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.122 4.122 29 C -0.119 4.119 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.159 0.939 7.702 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.348 5.348 18 C 0.297 3.703 19 O -0.442 6.442 20 C -0.155 4.155 21 C -0.137 4.137 22 C -0.180 4.180 23 C -0.085 4.085 24 C -0.075 4.075 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.140 4.140 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.661 0.542 7.536 13.895 hybrid contribution 0.001 1.527 -0.190 1.539 sum 11.662 2.068 7.346 13.938 Atomic orbital electron populations 1.69983 1.05161 1.25559 1.53627 1.25132 0.95277 0.98143 1.00421 0.86372 0.79705 0.84163 0.77631 1.20020 1.21423 1.21397 1.19290 0.91375 0.83269 1.44398 0.90808 1.44099 1.31961 1.02953 1.52701 1.21418 0.88880 0.96807 0.91058 1.23355 0.99128 0.86551 0.95285 1.87802 1.40275 1.36106 1.66938 1.22869 0.86663 0.98708 0.94080 1.21430 0.93764 0.89268 0.93743 0.94127 1.21133 0.97392 0.90159 0.90118 1.46040 1.12630 1.40243 1.35872 1.20380 0.84018 0.83317 0.82537 1.90630 1.28288 1.55952 1.69364 1.20753 0.97356 0.99815 0.97569 1.22419 0.95729 0.97022 0.98517 1.22646 0.95907 0.97781 1.01704 1.19656 0.91936 1.00876 0.95994 1.19836 0.96569 0.93588 0.97476 1.21120 0.96072 1.00084 0.95587 1.21162 0.99061 0.94866 0.98570 1.21130 0.99937 0.94078 0.99437 1.21121 0.96862 0.99707 0.96272 1.21051 0.99093 0.94137 0.99412 0.93492 0.95256 0.88977 0.90237 0.94133 0.93524 0.89923 0.91674 0.92433 0.74694 0.88491 0.88260 0.86839 0.87295 0.90315 0.90548 0.85912 0.86143 0.86333 0.86261 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.88 11.13 55.49 0.62 -23.26 16 2 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 3 Si 0.89 20.56 29.57 -169.99 -5.03 15.53 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.20 7.05 -15.06 -0.11 -6.31 16 8 H 0.07 1.86 5.81 -52.49 -0.30 1.55 16 9 N -0.59 -13.46 3.03 -164.29 -0.50 -13.96 16 10 C 0.14 3.24 5.38 -3.53 -0.02 3.22 16 11 C 0.03 0.67 6.99 37.32 0.26 0.93 16 12 O -0.39 -7.61 10.74 -35.23 -0.38 -7.99 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 C 0.13 2.42 3.21 -67.42 -0.22 2.20 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.51 4.45 -4.04 -0.02 2.50 16 17 N -0.70 -12.84 3.78 -60.29 -0.23 -13.07 16 18 C 0.51 9.27 7.82 -10.98 -0.09 9.19 16 19 O -0.56 -11.74 16.03 5.56 0.09 -11.65 16 20 C -0.12 -1.68 6.14 -29.03 -0.18 -1.86 16 21 C -0.12 -1.62 8.36 -36.03 -0.30 -1.92 16 22 C -0.16 -2.08 9.10 -36.03 -0.33 -2.41 16 23 C -0.05 -0.52 5.79 -29.03 -0.17 -0.69 16 24 C -0.07 -0.90 5.12 -104.62 -0.54 -1.44 16 25 C -0.11 -1.38 9.70 -39.58 -0.38 -1.77 16 26 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 27 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 28 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 29 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 30 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.32 7.57 -51.93 -0.39 0.93 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.42 7.94 7.30 -40.82 -0.30 7.64 16 40 H 0.10 1.45 7.79 -51.93 -0.40 1.04 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.11 1.52 7.84 -52.49 -0.41 1.11 16 43 H 0.11 1.44 7.84 -52.49 -0.41 1.03 16 44 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 45 H 0.08 0.78 7.74 -51.92 -0.40 0.38 16 46 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -29.64 405.94 -10.82 -40.46 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -8.01 Total: 11.80 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.51 Total: -3.98 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.11 Total: -50.30 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.29 Total: -19.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.64 -10.82 -40.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.263 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds