Wall clock time and date at job start Wed Apr 1 2020 03:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47373 * 300.00361 * 3 2 1 6 6 H 1.48497 * 109.47034 * 60.00634 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99883 * 190.72553 * 7 2 1 9 9 N 1.36935 * 120.00120 * 10.72463 * 7 2 1 10 10 C 1.47154 * 120.98076 * 31.17748 * 9 7 2 11 11 C 1.53306 * 108.38046 * 129.48656 * 10 9 7 12 12 O 1.42965 * 109.22056 * 52.30718 * 11 10 9 13 13 C 1.42968 * 114.16219 * 297.41390 * 12 11 10 14 14 C 1.47146 * 120.98322 * 211.20713 * 9 7 2 15 15 H 1.08997 * 109.68965 * 110.74769 * 14 9 7 16 16 C 1.53006 * 109.68042 * 350.23218 * 14 9 7 17 17 N 1.46501 * 109.46648 * 60.62617 * 16 14 9 18 18 C 1.34781 * 119.99628 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00169 * 359.73293 * 18 17 16 20 20 C 1.50700 * 119.99848 * 179.72239 * 18 17 16 21 21 C 1.50702 * 109.46775 * 180.02562 * 20 18 17 22 22 C 1.31003 * 119.99470 * 125.00372 * 21 20 18 23 23 C 1.50700 * 119.99752 * 179.97438 * 22 21 20 24 24 C 1.50703 * 109.47154 * 125.00050 * 23 22 21 25 25 C 1.38242 * 120.00000 * 269.72857 * 24 23 22 26 26 C 1.38233 * 119.99657 * 179.78540 * 25 24 23 27 27 C 1.38234 * 120.00302 * 0.44247 * 26 25 24 28 28 C 1.38239 * 119.99844 * 359.81300 * 27 26 25 29 29 C 1.38231 * 119.99812 * 89.99937 * 24 23 22 30 30 H 0.97001 * 120.00671 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.68509 * 249.20948 * 10 9 7 32 32 H 1.09000 * 109.68586 * 9.76781 * 10 9 7 33 33 H 1.08998 * 109.50803 * 172.22395 * 11 10 9 34 34 H 1.08996 * 109.51369 * 292.38328 * 11 10 9 35 35 H 1.08994 * 109.51710 * 302.66205 * 13 12 11 36 36 H 1.09004 * 109.50916 * 182.50486 * 13 12 11 37 37 H 1.08997 * 109.47036 * 300.62573 * 16 14 9 38 38 H 1.08994 * 109.46972 * 180.62551 * 16 14 9 39 39 H 0.96990 * 120.00459 * 359.72472 * 17 16 14 40 40 H 1.08998 * 109.47210 * 300.00335 * 20 18 17 41 41 H 1.08998 * 109.46647 * 60.00956 * 20 18 17 42 42 H 1.07995 * 120.00295 * 305.00111 * 21 20 18 43 43 H 1.07995 * 120.00235 * 359.97438 * 22 21 20 44 44 H 1.09002 * 109.47663 * 245.00176 * 23 22 21 45 45 H 1.09009 * 109.47294 * 5.00163 * 23 22 21 46 46 H 1.07998 * 119.99557 * 359.97438 * 25 24 23 47 47 H 1.08007 * 119.99562 * 180.27343 * 26 25 24 48 48 H 1.07993 * 120.00124 * 179.83237 * 27 26 25 49 49 H 1.07996 * 120.00124 * 180.02562 * 28 27 26 50 50 H 1.07994 * 120.00008 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0761 -1.2104 0.1735 9 7 1.3435 -2.3776 -0.2217 10 6 0.1534 -2.4223 -1.0860 11 6 0.3401 -3.5498 -2.1079 12 8 0.6709 -4.7586 -1.4198 13 6 1.9024 -4.7016 -0.6959 14 6 1.7957 -3.6332 0.3982 15 1 1.0758 -3.9502 1.1528 16 6 3.1647 -3.4230 1.0484 17 7 3.0597 -2.3937 2.0856 18 6 4.1486 -2.0405 2.7970 19 8 5.2143 -2.5782 2.5819 20 6 4.0421 -0.9773 3.8597 21 6 5.3902 -0.7712 4.5010 22 6 5.9224 0.4253 4.5369 23 6 7.2702 0.6315 5.1786 24 6 8.1987 1.2958 4.1949 25 6 8.9805 0.5258 3.3540 26 6 9.8288 1.1353 2.4486 27 6 9.9022 2.5144 2.3903 28 6 9.1244 3.2843 3.2348 29 6 8.2727 2.6749 4.1373 30 1 -0.4851 0.8400 0.0004 31 1 -0.7323 -2.6178 -0.4814 32 1 0.0410 -1.4708 -1.6057 33 1 -0.5847 -3.6908 -2.6673 34 1 1.1458 -3.2894 -2.7942 35 1 2.7137 -4.4453 -1.3771 36 1 2.1016 -5.6713 -0.2396 37 1 3.8813 -3.1044 0.2915 38 1 3.5012 -4.3577 1.4968 39 1 2.2075 -1.9639 2.2579 40 1 3.7089 -0.0434 3.4071 41 1 3.3234 -1.2910 4.6167 42 1 5.9175 -1.6099 4.9309 43 1 5.3953 1.2639 4.1065 44 1 7.1605 1.2646 6.0591 45 1 7.6835 -0.3331 5.4739 46 1 8.9261 -0.5517 3.4024 47 1 10.4364 0.5337 1.7885 48 1 10.5670 2.9905 1.6848 49 1 9.1814 4.3617 3.1891 50 1 7.6649 3.2763 4.7969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272870020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:00 Heat of formation + Delta-G solvation = -36.447846 kcal Electronic energy + Delta-G solvation = -29960.712686 eV Core-core repulsion = 25953.022798 eV Total energy + Delta-G solvation = -4007.689888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.86176 -40.18990 -39.86495 -37.05621 -36.46028 -35.26218 -33.54193 -33.08820 -32.13385 -31.77684 -29.96160 -28.96935 -27.20843 -25.69232 -25.22486 -23.47955 -23.35271 -22.22066 -21.46320 -21.15106 -20.43256 -18.77332 -17.74936 -17.62645 -17.58650 -17.24933 -16.54793 -16.36806 -16.23200 -16.06706 -16.01621 -15.71986 -15.43464 -15.14672 -14.85865 -14.66706 -14.52700 -14.30014 -14.11750 -14.06389 -13.63529 -13.43955 -13.13166 -12.95676 -12.79928 -12.74697 -12.70062 -12.46774 -12.20906 -12.13474 -12.00821 -11.95713 -11.86474 -11.81836 -11.31232 -10.97770 -10.64155 -10.57054 -9.97106 -9.83415 -9.80962 -9.59437 -8.62417 -7.87736 -5.38632 0.41731 0.48734 1.26544 1.37452 1.45232 1.51686 1.77601 2.41079 2.51779 2.87263 3.03396 3.28509 3.44331 3.82477 3.90909 3.98140 4.01361 4.04653 4.15888 4.20721 4.25370 4.28996 4.35155 4.44749 4.47180 4.53391 4.59895 4.63159 4.64146 4.65730 4.67117 4.73832 4.78705 4.85566 4.94333 5.00498 5.11513 5.15243 5.16302 5.30414 5.55413 5.58839 5.60859 5.64644 5.65988 5.69838 5.74951 5.87801 6.12974 6.29046 6.37043 6.74658 7.10539 7.38402 7.75987 8.32359 9.16764 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.002783 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.723536 B =10059.504107 C =10921.853936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.029 4.029 3 Si 0.941 3.059 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.039 0.961 16 C 0.143 3.857 17 N -0.699 5.699 18 C 0.508 3.492 19 O -0.591 6.591 20 C -0.110 4.110 21 C -0.133 4.133 22 C -0.154 4.154 23 C -0.044 4.044 24 C -0.089 4.089 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.136 4.136 28 C -0.129 4.129 29 C -0.129 4.129 30 H 0.250 0.750 31 H 0.008 0.992 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.118 0.882 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.133 0.867 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 0.937 8.201 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.056 0.944 16 C 0.018 3.982 17 N -0.349 5.349 18 C 0.296 3.704 19 O -0.474 6.474 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.172 4.172 23 C -0.081 4.081 24 C -0.089 4.089 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.154 4.154 28 C -0.146 4.146 29 C -0.146 4.146 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.136 0.864 47 H 0.151 0.849 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.468 0.521 8.041 14.845 hybrid contribution -0.197 1.505 -0.355 1.559 sum 12.271 2.027 7.686 14.620 Atomic orbital electron populations 1.70093 1.06045 1.25549 1.55391 1.25562 0.95695 1.00078 1.01240 0.85619 0.78297 0.81847 0.77209 1.20628 1.22268 1.20955 1.19288 0.91014 0.84010 1.42692 0.91544 1.44298 1.31789 1.03701 1.53335 1.21245 0.88149 0.96929 0.91330 1.23222 1.00481 0.85295 0.94201 1.87807 1.41028 1.35727 1.67014 1.22994 0.86065 0.99717 0.93374 1.21551 0.93891 0.88266 0.94275 0.94369 1.21070 0.96256 0.91057 0.89810 1.46088 1.12640 1.40292 1.35900 1.20974 0.83232 0.83461 0.82719 1.90611 1.29217 1.57191 1.70333 1.20769 0.98803 0.98252 0.97090 1.22395 0.95656 0.97499 0.99629 1.22786 0.96456 0.97254 1.00713 1.19675 0.90555 1.01559 0.96316 1.20022 0.96916 0.94193 0.97803 1.21281 0.97122 1.00163 0.96576 1.21426 0.99218 0.95681 0.98730 1.21463 1.00192 0.93897 0.99802 1.21487 0.96330 1.01036 0.95781 1.21351 0.99401 0.94037 0.99846 0.94020 0.97407 0.91620 0.87741 0.93943 0.93439 0.86441 0.93680 0.90329 0.75084 0.88830 0.85672 0.86671 0.87728 0.88184 0.90161 0.86382 0.84946 0.84235 0.84004 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 11.13 21.65 0.24 -49.55 16 2 C -0.03 -1.48 5.06 84.86 0.43 -1.05 16 3 Si 0.94 42.58 29.57 68.60 2.03 44.61 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.24 -11.75 7.05 84.03 0.59 -11.16 16 8 H 0.07 3.35 5.81 -2.91 -0.02 3.34 16 9 N -0.61 -27.45 3.03 -673.70 -2.04 -29.49 16 10 C 0.15 6.73 5.38 86.36 0.46 7.19 16 11 C 0.05 1.69 6.99 72.08 0.50 2.20 16 12 O -0.40 -14.52 10.74 -148.98 -1.60 -16.12 16 13 C 0.06 1.88 6.29 72.08 0.45 2.33 16 14 C 0.13 4.75 3.21 44.97 0.14 4.90 16 15 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 16 C 0.14 5.13 4.45 86.38 0.38 5.51 16 17 N -0.70 -25.43 3.78 -463.05 -1.75 -27.18 16 18 C 0.51 18.18 7.82 87.66 0.69 18.86 16 19 O -0.59 -24.54 16.03 -3.04 -0.05 -24.59 16 20 C -0.11 -3.10 6.14 29.10 0.18 -2.92 16 21 C -0.13 -3.54 8.36 25.64 0.21 -3.32 16 22 C -0.15 -3.78 9.10 25.64 0.23 -3.55 16 23 C -0.04 -0.90 5.79 29.10 0.17 -0.74 16 24 C -0.09 -2.08 5.12 -19.86 -0.10 -2.18 16 25 C -0.13 -3.32 9.70 22.27 0.22 -3.10 16 26 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 27 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 28 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 29 C -0.13 -2.69 9.70 22.27 0.22 -2.48 16 30 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 3.31 6.33 -2.39 -0.02 3.30 16 33 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.04 1.81 7.57 -2.39 -0.02 1.79 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.41 15.63 7.30 -92.72 -0.68 14.96 16 40 H 0.09 2.73 7.79 -2.39 -0.02 2.71 16 41 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.12 3.00 7.84 -2.91 -0.02 2.98 16 43 H 0.10 2.65 7.84 -2.91 -0.02 2.63 16 44 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 45 H 0.08 1.57 7.74 -2.38 -0.02 1.55 16 46 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 47 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 48 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 49 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 50 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -63.22 405.94 2.53 -60.69 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.25 Total: 38.74 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.45 Total: 2.88 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.55 Total: -106.22 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.65 Total: -40.70 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.22 2.53 -60.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.238 kcal (2) G-P(sol) polarization free energy of solvation -63.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds