Wall clock time and date at job start Wed Apr 1 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00501 * 2 1 4 4 H 1.48503 * 109.47037 * 239.99916 * 3 2 1 5 5 H 1.48497 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47656 * 119.99556 * 3 2 1 7 7 C 1.38814 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00126 * 191.96800 * 7 2 1 9 9 N 1.36937 * 119.99880 * 11.97723 * 7 2 1 10 10 C 1.47146 * 120.98369 * 30.06582 * 9 7 2 11 11 C 1.53299 * 108.38302 * 129.49343 * 10 9 7 12 12 O 1.42952 * 109.22453 * 52.30294 * 11 10 9 13 13 C 1.42966 * 114.16803 * 297.41832 * 12 11 10 14 14 C 1.47151 * 120.97887 * 210.09600 * 9 7 2 15 15 H 1.09005 * 109.68190 * 110.75101 * 14 9 7 16 16 C 1.52998 * 109.68498 * 350.23066 * 14 9 7 17 17 N 1.46507 * 109.46961 * 61.01226 * 16 14 9 18 18 C 1.34778 * 119.99946 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99794 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.99667 * 180.27408 * 18 17 16 21 21 C 1.50706 * 109.46728 * 179.73012 * 20 18 17 22 22 C 1.30997 * 119.99873 * 126.92659 * 21 20 18 23 23 C 1.50699 * 120.00301 * 8.40311 * 22 21 20 24 24 C 1.50698 * 109.47124 * 125.91907 * 23 22 21 25 25 C 1.38231 * 120.00556 * 269.72727 * 24 23 22 26 26 C 1.38234 * 120.00398 * 179.78845 * 25 24 23 27 27 C 1.38235 * 119.99760 * 0.44384 * 26 25 24 28 28 C 1.38235 * 120.00055 * 359.81062 * 27 26 25 29 29 C 1.38231 * 119.99891 * 359.97438 * 28 27 26 30 30 H 0.97008 * 119.99566 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.68585 * 249.21316 * 10 9 7 32 32 H 1.09003 * 109.68390 * 9.76982 * 10 9 7 33 33 H 1.09001 * 109.50930 * 172.22735 * 11 10 9 34 34 H 1.09001 * 109.50836 * 292.37575 * 11 10 9 35 35 H 1.08998 * 109.51199 * 302.66041 * 13 12 11 36 36 H 1.09000 * 109.51668 * 182.50288 * 13 12 11 37 37 H 1.09003 * 109.47281 * 301.01701 * 16 14 9 38 38 H 1.09000 * 109.47420 * 181.01327 * 16 14 9 39 39 H 0.96999 * 119.99917 * 0.02562 * 17 16 14 40 40 H 1.08991 * 109.47725 * 299.72760 * 20 18 17 41 41 H 1.08996 * 109.47022 * 59.73540 * 20 18 17 42 42 H 1.08000 * 120.00090 * 306.92277 * 21 20 18 43 43 H 1.08001 * 119.99566 * 188.40109 * 22 21 20 44 44 H 1.08997 * 109.47350 * 245.92326 * 23 22 21 45 45 H 1.09007 * 109.46677 * 5.92517 * 23 22 21 46 46 H 1.08002 * 119.99884 * 0.02562 * 25 24 23 47 47 H 1.07999 * 120.00272 * 180.27436 * 26 25 24 48 48 H 1.07999 * 119.99962 * 179.83085 * 27 26 25 49 49 H 1.07998 * 120.00060 * 180.02562 * 28 27 26 50 50 H 1.08005 * 120.00299 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0725 -1.2123 0.1945 9 7 1.3478 -2.3753 -0.2450 10 6 0.1598 -2.4071 -1.1127 11 6 0.3523 -3.5139 -2.1557 12 8 0.6855 -4.7346 -1.4906 13 6 1.9152 -4.6879 -0.7629 14 6 1.8027 -3.6412 0.3515 15 1 1.0820 -3.9751 1.0981 16 6 3.1694 -3.4394 1.0088 17 7 3.0569 -2.4374 2.0718 18 6 4.1427 -2.0959 2.7935 19 8 5.2130 -2.6176 2.5627 20 6 4.0256 -1.0698 3.8909 21 6 5.3707 -0.8754 4.5423 22 6 5.8767 0.3278 4.6536 23 6 5.0403 1.5322 4.3060 24 6 5.0289 2.4887 5.4705 25 6 4.0504 2.3843 6.4413 26 6 4.0425 3.2590 7.5116 27 6 5.0078 4.2440 7.6064 28 6 5.9832 4.3518 6.6329 29 6 5.9937 3.4743 5.5649 30 1 -0.4850 0.8402 -0.0004 31 1 -0.7266 -2.6170 -0.5141 32 1 0.0455 -1.4460 -1.6141 33 1 -0.5707 -3.6469 -2.7200 34 1 1.1587 -3.2375 -2.8351 35 1 2.7272 -4.4158 -1.4372 36 1 2.1166 -5.6656 -0.3250 37 1 3.8852 -3.0972 0.2613 38 1 3.5112 -4.3832 1.4338 39 1 2.2009 -2.0205 2.2566 40 1 3.6861 -0.1238 3.4693 41 1 3.3079 -1.4143 4.6353 42 1 5.9173 -1.7279 4.9175 43 1 6.8935 0.4565 4.9944 44 1 5.4630 2.0283 3.4324 45 1 4.0208 1.2153 4.0862 46 1 3.2942 1.6169 6.3655 47 1 3.2806 3.1746 8.2724 48 1 5.0000 4.9291 8.4413 49 1 6.7376 5.1210 6.7072 50 1 6.7560 3.5582 4.8044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272870022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:05 Heat of formation + Delta-G solvation = -12.852279 kcal Electronic energy + Delta-G solvation = -30141.805932 eV Core-core repulsion = 26135.139225 eV Total energy + Delta-G solvation = -4006.666707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.56295 -39.23505 -38.34789 -35.94652 -35.22109 -33.57540 -32.09438 -31.52662 -30.97803 -30.47334 -28.52591 -27.20574 -26.15979 -24.88929 -23.47707 -22.65935 -21.79209 -21.53559 -20.11504 -19.67233 -18.29082 -17.26198 -16.81134 -16.35669 -15.98587 -15.70871 -15.54419 -15.24139 -14.90734 -14.82555 -14.58047 -14.19768 -13.99357 -13.88350 -13.58791 -13.51572 -13.27003 -13.12146 -12.87211 -12.67688 -12.51106 -12.14176 -11.90896 -11.71873 -11.47551 -11.18196 -11.07651 -11.05014 -10.89659 -10.77283 -10.66622 -10.44285 -10.29947 -10.05916 -9.69468 -9.45219 -9.04207 -9.01770 -8.84008 -8.74380 -8.69090 -8.27149 -6.77673 -5.93774 -3.42403 1.25378 1.30514 2.28896 3.19080 3.25070 3.33272 3.35295 3.70163 3.88221 4.31240 4.51453 4.72218 4.78668 4.89438 4.94255 5.03773 5.11366 5.19234 5.23698 5.26005 5.38277 5.43697 5.54820 5.58141 5.60247 5.71241 5.75897 5.81818 5.85250 5.95329 5.98944 6.00876 6.07170 6.11969 6.13802 6.21959 6.31018 6.36460 6.40454 6.50154 6.55741 6.70594 6.74770 6.88995 6.94866 7.04761 7.11273 7.46004 7.66835 7.84464 8.21146 8.26137 8.83884 9.02351 9.63154 10.21938 11.12682 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014146 B = 0.002803 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.894892 B = 9985.444446 C =11233.660988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.009 3.991 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.143 3.857 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.136 3.864 17 N -0.696 5.696 18 C 0.513 3.487 19 O -0.563 6.563 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.158 4.158 23 C -0.068 4.068 24 C -0.067 4.067 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.130 4.130 28 C -0.120 4.120 29 C -0.119 4.119 30 H 0.256 0.744 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.415 0.585 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.324 2.630 10.483 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.348 5.348 18 C 0.299 3.701 19 O -0.443 6.443 20 C -0.165 4.165 21 C -0.139 4.139 22 C -0.176 4.176 23 C -0.105 4.105 24 C -0.067 4.067 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.148 4.148 28 C -0.139 4.139 29 C -0.137 4.137 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.817 2.252 10.300 12.555 hybrid contribution 0.135 1.483 0.006 1.489 sum 6.951 3.735 10.306 12.980 Atomic orbital electron populations 1.69975 1.05163 1.25771 1.53443 1.25103 0.95264 0.98133 1.00515 0.86489 0.78989 0.83525 0.78525 1.21004 1.21552 1.20506 1.19218 0.91621 0.83449 1.44232 0.90834 1.44088 1.32189 1.02350 1.53025 1.21424 0.88868 0.97134 0.90781 1.23351 0.99113 0.86249 0.95594 1.87799 1.40451 1.35310 1.67583 1.22869 0.86699 0.98795 0.93960 1.21427 0.93756 0.89236 0.93789 0.94140 1.21144 0.97422 0.90663 0.89604 1.46020 1.12454 1.42036 1.34268 1.20331 0.84082 0.82801 0.82884 1.90634 1.27921 1.55557 1.70145 1.20909 0.97757 1.00499 0.97315 1.22379 0.96015 0.97332 0.98156 1.22534 0.99040 0.93283 1.02711 1.19925 1.01312 0.93733 0.95483 1.19842 0.94977 0.95740 0.96146 1.21109 0.98624 0.99322 0.94178 1.21144 0.98791 0.95601 0.98157 1.21113 0.95665 0.98851 0.99174 1.21117 0.98817 0.99213 0.94704 1.21091 0.98709 0.95420 0.98492 0.93396 0.95281 0.88894 0.90242 0.94129 0.93510 0.89925 0.91597 0.92429 0.74740 0.87627 0.88441 0.86653 0.87068 0.90168 0.89369 0.85923 0.86167 0.86386 0.86291 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.65 11.12 55.49 0.62 -23.03 16 2 C 0.01 0.23 5.04 -17.43 -0.09 0.15 16 3 Si 0.90 20.22 29.57 -169.99 -5.03 15.20 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.26 -6.17 7.13 -15.06 -0.11 -6.28 16 8 H 0.07 1.81 5.76 -52.49 -0.30 1.51 16 9 N -0.59 -13.31 3.04 -164.30 -0.50 -13.81 16 10 C 0.14 3.21 5.39 -3.53 -0.02 3.19 16 11 C 0.03 0.66 6.98 37.31 0.26 0.92 16 12 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 13 C 0.06 0.98 6.29 37.31 0.23 1.21 16 14 C 0.13 2.40 3.20 -67.42 -0.22 2.18 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.48 4.44 -4.04 -0.02 2.46 16 17 N -0.70 -12.64 3.77 -60.29 -0.23 -12.87 16 18 C 0.51 9.18 7.82 -10.99 -0.09 9.10 16 19 O -0.56 -11.67 16.03 5.55 0.09 -11.58 16 20 C -0.13 -1.81 5.79 -29.03 -0.17 -1.98 16 21 C -0.12 -1.66 8.75 -36.02 -0.32 -1.98 16 22 C -0.16 -2.02 9.49 -36.03 -0.34 -2.36 16 23 C -0.07 -0.87 5.45 -29.04 -0.16 -1.03 16 24 C -0.07 -0.82 5.12 -104.62 -0.54 -1.35 16 25 C -0.11 -1.32 9.70 -39.59 -0.38 -1.70 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 27 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 29 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.29 6.28 -51.93 -0.33 1.96 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.32 7.55 -51.93 -0.39 0.92 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.41 7.79 7.35 -40.82 -0.30 7.49 16 40 H 0.11 1.57 5.31 -51.93 -0.28 1.29 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.12 1.58 8.05 -52.49 -0.42 1.16 16 43 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 45 H 0.09 1.18 5.23 -51.92 -0.27 0.91 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 48 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 50 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -28.94 401.43 -10.66 -39.60 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.76 Total: 12.49 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.52 Total: -4.08 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.11 Total: -49.71 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.29 Total: -19.54 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.94 -10.66 -39.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272870022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.747 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds